Wall clock time and date at job start Tue Mar 31 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47254 * 2 1 4 4 N 1.46901 * 109.47367 * 239.99355 * 2 1 3 5 5 C 1.46901 * 110.99469 * 52.48963 * 4 2 1 6 6 C 1.50705 * 109.47125 * 77.22079 * 5 4 2 7 7 H 1.07996 * 120.00003 * 4.13333 * 6 5 4 8 8 C 1.37868 * 119.99852 * 184.13977 * 6 5 4 9 9 N 1.31513 * 120.00437 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99868 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47055 * 60.00007 * 10 8 6 12 12 H 1.48507 * 109.47003 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47402 * 299.99765 * 10 8 6 14 14 C 1.46891 * 111.00135 * 288.53487 * 4 2 1 15 15 C 1.50693 * 109.47441 * 287.02183 * 14 4 2 16 16 C 1.38287 * 120.01270 * 95.16566 * 15 14 4 17 17 C 1.37966 * 119.96303 * 180.02562 * 16 15 14 18 18 C 1.39146 * 120.21287 * 359.91991 * 17 16 15 19 19 C 1.38375 * 119.69583 * 359.96965 * 18 17 16 20 20 C 1.38106 * 120.00770 * 274.89343 * 15 14 4 21 21 C 1.50765 * 121.40200 * 180.27090 * 19 18 17 22 22 C 1.53073 * 109.68133 * 342.17985 * 21 19 18 23 23 C 1.53398 * 108.29671 * 48.21004 * 22 21 19 24 24 O 1.35842 * 118.49520 * 179.77721 * 18 17 16 25 25 H 1.08998 * 109.46977 * 53.59636 * 1 2 3 26 26 H 1.09005 * 109.47206 * 173.59989 * 1 2 3 27 27 H 1.09000 * 109.47401 * 293.59610 * 1 2 3 28 28 H 1.09004 * 109.46829 * 119.99421 * 2 1 3 29 29 H 1.08997 * 109.47189 * 68.44437 * 3 2 1 30 30 H 1.08992 * 109.47233 * 188.44808 * 3 2 1 31 31 H 1.08995 * 109.46626 * 308.44700 * 3 2 1 32 32 H 1.08996 * 109.46829 * 197.21518 * 5 4 2 33 33 H 1.08993 * 109.47342 * 317.21561 * 5 4 2 34 34 H 0.96999 * 120.00557 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47480 * 47.02618 * 14 4 2 36 36 H 1.09002 * 109.47071 * 167.02003 * 14 4 2 37 37 H 1.08003 * 120.01827 * 0.08988 * 16 15 14 38 38 H 1.08004 * 119.89336 * 179.97438 * 17 16 15 39 39 H 1.07999 * 119.84233 * 0.02562 * 20 15 14 40 40 H 1.09001 * 109.43451 * 222.11168 * 21 19 18 41 41 H 1.09003 * 109.43509 * 102.24412 * 21 19 18 42 42 H 1.09002 * 109.69782 * 288.50885 * 22 21 19 43 43 H 1.08999 * 109.73086 * 167.93326 * 22 21 19 44 44 H 1.09000 * 109.68717 * 175.56093 * 23 22 21 45 45 H 1.09005 * 109.71609 * 55.02672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 1.4078 -0.1379 -2.4142 6 6 2.0724 1.1700 -2.7592 7 1 2.9132 1.5183 -2.1778 8 6 1.6069 1.9218 -3.8169 9 7 0.5832 1.4975 -4.5252 10 14 2.4302 3.5433 -4.2441 11 1 3.8572 3.3014 -4.5764 12 1 1.7466 4.1527 -5.4132 13 1 2.3417 4.4645 -3.0828 14 6 1.7842 -2.1395 -1.1048 15 6 2.7439 -2.7407 -0.1106 16 6 2.3524 -2.9285 1.2023 17 6 3.2320 -3.4786 2.1117 18 6 4.5128 -3.8472 1.7121 19 6 4.9011 -3.6603 0.3972 20 6 4.0129 -3.1096 -0.5118 21 6 6.2772 -4.0513 -0.0788 22 6 7.2106 -4.2171 1.1230 23 6 6.5008 -5.0879 2.1676 24 8 5.3519 -4.3813 2.6374 25 1 -0.3633 0.6099 -0.8271 26 1 -0.3634 -1.0213 -0.1146 27 1 -0.3634 0.4114 0.9417 28 1 1.8933 -0.5138 0.8901 29 1 1.8052 1.9109 0.9558 30 1 3.1194 1.4462 -0.1510 31 1 1.5587 1.9980 -0.8048 32 1 1.5365 -0.8393 -3.2385 33 1 0.3447 0.0291 -2.2418 34 1 0.2559 2.0263 -5.2696 35 1 0.7606 -2.3204 -0.7768 36 1 1.9389 -2.5974 -2.0818 37 1 1.3581 -2.6456 1.5153 38 1 2.9251 -3.6243 3.1370 39 1 4.3150 -2.9657 -1.5386 40 1 6.6675 -3.2750 -0.7369 41 1 6.2181 -4.9929 -0.6248 42 1 7.4357 -3.2401 1.5509 43 1 8.1345 -4.7015 0.8073 44 1 7.1758 -5.2861 3.0002 45 1 6.1924 -6.0294 1.7131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891694207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:34 Heat of formation + Delta-G solvation = -32.474802 kcal Electronic energy + Delta-G solvation = -23512.105974 eV Core-core repulsion = 20300.686374 eV Total energy + Delta-G solvation = -3211.419601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58627 -39.79381 -38.09848 -35.19123 -34.67912 -33.23502 -31.55941 -31.11252 -29.19403 -27.83613 -26.83788 -25.73756 -24.24059 -23.77241 -23.15259 -20.62253 -20.00262 -18.65276 -18.41365 -17.58300 -16.90640 -16.70734 -16.48922 -15.75169 -15.56781 -15.31369 -15.06051 -14.88216 -14.59603 -14.38757 -14.17497 -14.00719 -13.94726 -13.29298 -13.13372 -13.04490 -12.78565 -12.71205 -12.65575 -12.44092 -12.23189 -12.17513 -11.95433 -11.85867 -11.73885 -11.61598 -11.27972 -11.16106 -10.99274 -10.47919 -9.65605 -8.99905 -8.80069 -8.09812 -6.14041 0.42297 0.49659 1.42750 1.44364 1.51845 2.42229 2.45024 2.77050 3.21413 3.51798 3.71311 3.79738 3.87292 4.02517 4.05919 4.16304 4.27007 4.34782 4.41504 4.46741 4.51857 4.59480 4.66115 4.68046 4.76005 4.78244 4.89553 4.95926 5.00671 5.05724 5.09992 5.15156 5.16530 5.21588 5.28641 5.34170 5.35945 5.53622 5.61594 5.74756 5.80088 5.81134 5.88843 6.20602 6.52569 6.56270 6.75251 6.98695 7.50635 8.99636 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.003993 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.486223 B = 7011.389815 C = 7598.509313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 C -0.134 4.134 4 N -0.532 5.532 5 C 0.199 3.801 6 C -0.498 4.498 7 H 0.067 0.933 8 C 0.001 3.999 9 N -0.938 5.938 10 Si 0.954 3.046 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.094 3.906 15 C -0.102 4.102 16 C -0.085 4.085 17 C -0.154 4.154 18 C 0.113 3.887 19 C -0.165 4.165 20 C -0.077 4.077 21 C -0.081 4.081 22 C -0.154 4.154 23 C 0.053 3.947 24 O -0.332 6.332 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.056 0.944 32 H -0.009 1.009 33 H -0.008 1.008 34 H 0.260 0.740 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -12.923 14.010 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 C -0.192 4.192 4 N -0.256 5.256 5 C 0.073 3.927 6 C -0.537 4.537 7 H 0.085 0.915 8 C -0.196 4.196 9 N -0.580 5.580 10 Si 0.780 3.220 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.033 4.033 15 C -0.103 4.103 16 C -0.104 4.104 17 C -0.172 4.172 18 C 0.068 3.932 19 C -0.166 4.166 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.191 4.191 23 C -0.021 4.021 24 O -0.247 6.247 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.015 -12.792 14.023 21.461 hybrid contribution -0.793 0.819 -1.079 1.570 sum 9.222 -11.972 12.944 19.898 Atomic orbital electron populations 1.22342 0.98011 1.01133 1.01814 1.21544 0.92406 0.95383 0.92752 1.21947 1.00500 0.95917 1.00811 1.62288 1.58961 1.01335 1.03001 1.19563 0.92921 0.93915 0.86333 1.21545 1.14743 1.04570 1.12798 0.91478 1.25748 0.95885 1.01532 0.96428 1.70071 1.26960 1.40155 1.20778 0.85663 0.78636 0.80036 0.77679 1.19777 1.21330 1.19313 1.20967 0.95801 0.89171 0.97411 1.19689 0.95473 1.00304 0.94832 1.20934 0.99850 0.97703 0.91909 1.20706 0.91170 1.04217 1.01157 1.18784 0.90201 0.96071 0.88117 1.20020 0.98201 1.05281 0.93123 1.20844 0.92682 0.96700 0.99332 1.20545 0.90044 1.02682 0.98473 1.22220 0.99746 1.01373 0.95790 1.23252 0.85225 0.93836 0.99770 1.85950 1.36403 1.68534 1.33793 0.94261 0.92923 0.90873 0.90156 0.92362 0.93949 0.92490 0.99053 0.99037 0.93128 0.94029 0.91964 0.84611 0.83980 0.86459 0.90192 0.89371 0.91513 0.87067 0.85181 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.25 8.37 71.98 0.60 -5.64 16 2 C 0.09 3.31 2.81 44.92 0.13 3.44 16 3 C -0.13 -5.31 7.80 71.98 0.56 -4.75 16 4 N -0.53 -22.71 4.39 -880.08 -3.86 -26.58 16 5 C 0.20 10.34 4.52 85.56 0.39 10.73 16 6 C -0.50 -27.59 6.69 25.60 0.17 -27.42 16 7 H 0.07 3.68 6.01 -2.91 -0.02 3.66 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.94 -56.31 13.29 21.44 0.28 -56.02 16 10 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.09 3.44 5.02 85.56 0.43 3.87 16 15 C -0.10 -3.27 4.97 -19.89 -0.10 -3.37 16 16 C -0.09 -2.38 8.26 22.22 0.18 -2.20 16 17 C -0.15 -4.04 9.94 22.42 0.22 -3.81 16 18 C 0.11 3.04 6.47 22.52 0.15 3.19 16 19 C -0.17 -4.45 5.75 -19.75 -0.11 -4.56 16 20 C -0.08 -2.38 9.34 22.30 0.21 -2.17 16 21 C -0.08 -1.61 5.86 29.89 0.18 -1.44 16 22 C -0.15 -2.35 6.19 30.75 0.19 -2.16 16 23 C 0.05 0.82 7.03 72.12 0.51 1.33 16 24 O -0.33 -7.85 10.27 -91.77 -0.94 -8.80 16 25 H 0.04 1.67 6.32 -2.39 -0.02 1.66 16 26 H 0.05 1.77 6.36 -2.38 -0.02 1.75 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 2.75 6.08 -2.38 -0.01 2.74 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.73 7.56 -2.39 -0.02 1.71 16 31 H 0.06 2.62 5.81 -2.39 -0.01 2.60 16 32 H -0.01 -0.49 7.60 -2.39 -0.02 -0.51 16 33 H -0.01 -0.44 5.43 -2.39 -0.01 -0.46 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.04 1.45 6.14 -2.38 -0.01 1.43 16 36 H 0.06 2.38 7.62 -2.39 -0.02 2.36 16 37 H 0.14 3.34 7.98 -2.91 -0.02 3.32 16 38 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -64.78 345.76 2.63 -62.14 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.97 Total: 17.12 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 4.16 Total: -34.45 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.58 Total: -82.60 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.94 Total: -8.80 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.78 2.63 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891694207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.668 kcal (2) G-P(sol) polarization free energy of solvation -64.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds