Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47201 * 306.23421 * 3 2 1 5 5 C 1.50698 * 109.47297 * 186.23352 * 3 2 1 6 6 H 1.08002 * 120.00371 * 244.86719 * 5 3 2 7 7 C 1.37880 * 119.99853 * 64.86246 * 5 3 2 8 8 N 1.31513 * 120.00109 * 194.58967 * 7 5 3 9 9 Si 1.86805 * 119.99809 * 14.59398 * 7 5 3 10 10 H 1.48496 * 109.47157 * 92.41198 * 9 7 5 11 11 H 1.48503 * 109.46933 * 212.41103 * 9 7 5 12 12 H 1.48502 * 109.47027 * 332.40884 * 9 7 5 13 13 N 1.46909 * 109.47514 * 66.23353 * 3 2 1 14 14 C 1.46897 * 111.00054 * 205.39273 * 13 3 2 15 15 H 1.08996 * 109.47433 * 327.57650 * 14 13 3 16 16 C 1.53002 * 109.46915 * 87.58117 * 14 13 3 17 17 C 1.52998 * 109.46851 * 207.57623 * 14 13 3 18 18 H 1.08997 * 109.69774 * 59.44647 * 17 14 13 19 19 C 1.53408 * 109.69864 * 298.84537 * 17 14 13 20 20 O 1.42825 * 108.37430 * 175.58737 * 19 17 14 21 21 C 1.35847 * 117.85893 * 49.21063 * 20 19 17 22 22 C 1.39141 * 118.49815 * 163.02389 * 21 20 19 23 23 C 1.37970 * 120.21499 * 179.59303 * 22 21 20 24 24 C 1.38291 * 119.95778 * 359.97438 * 23 22 21 25 25 C 1.38105 * 119.98071 * 0.06155 * 24 23 22 26 26 C 1.38373 * 121.80223 * 342.73264 * 21 20 19 27 27 C 1.50766 * 121.40219 * 0.52406 * 26 21 20 28 28 H 1.08997 * 109.46837 * 301.75995 * 1 2 3 29 29 H 1.08998 * 109.46617 * 61.75960 * 1 2 3 30 30 H 1.09000 * 109.47011 * 181.75992 * 1 2 3 31 31 H 1.08994 * 109.47161 * 239.99678 * 2 1 3 32 32 H 1.09001 * 109.46607 * 119.99871 * 2 1 3 33 33 H 0.96999 * 119.99678 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99561 * 329.35136 * 13 3 2 35 35 H 1.09005 * 109.46890 * 305.58345 * 16 14 13 36 36 H 1.08990 * 109.47483 * 65.58227 * 16 14 13 37 37 H 1.09001 * 109.46714 * 185.59156 * 16 14 13 38 38 H 1.09006 * 109.68665 * 295.31145 * 19 17 14 39 39 H 1.08997 * 109.68121 * 55.86725 * 19 17 14 40 40 H 1.07999 * 119.89137 * 359.59983 * 22 21 20 41 41 H 1.07999 * 120.02049 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.01114 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.83949 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.43707 * 222.10423 * 27 26 21 45 45 H 1.09004 * 109.40199 * 102.21573 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5885 1.9875 -0.8289 5 6 3.5391 1.4453 -0.1543 6 1 4.1638 1.8126 0.6466 7 6 4.1133 0.9788 -1.3178 8 7 5.4001 0.7100 -1.3543 9 14 3.0632 0.7287 -2.8424 10 1 3.0959 1.9590 -3.6733 11 1 3.5956 -0.4135 -3.6281 12 1 1.6636 0.4416 -2.4378 13 7 1.6771 2.0903 1.2676 14 6 1.5859 3.5476 1.1068 15 1 2.3058 3.8762 0.3574 16 6 0.1729 3.9234 0.6560 17 6 1.8931 4.2281 2.4422 18 1 2.8954 3.9549 2.7718 19 6 0.8650 3.7913 3.4937 20 8 1.2371 4.3594 4.7502 21 6 1.5231 5.6869 4.7870 22 6 1.5345 6.3297 6.0210 23 6 1.8287 7.6753 6.1002 24 6 2.1140 8.3887 4.9504 25 6 2.1028 7.7540 3.7239 26 6 1.8059 6.4040 3.6378 27 6 1.7993 5.7475 2.2806 28 1 -0.3633 0.5409 0.8738 29 1 -0.3632 0.4863 -0.9054 30 1 -0.3633 -1.0272 0.0316 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.8041 0.3822 -2.1730 34 1 0.8160 1.7121 1.6333 35 1 -0.0832 3.3620 -0.2426 36 1 -0.5368 3.6848 1.4481 37 1 0.1321 4.9913 0.4411 38 1 -0.1253 4.1467 3.2089 39 1 0.8575 2.7041 3.5702 40 1 1.3124 5.7734 6.9196 41 1 1.8371 8.1709 7.0597 42 1 2.3448 9.4419 5.0115 43 1 2.3256 8.3135 2.8273 44 1 2.6511 6.1038 1.7012 45 1 0.8755 6.0006 1.7604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893606833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -21.373377 kcal Electronic energy + Delta-G solvation = -23603.114324 eV Core-core repulsion = 20392.176117 eV Total energy + Delta-G solvation = -3210.938207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69657 -37.98876 -37.04150 -34.97913 -32.55597 -31.87771 -30.25825 -29.92372 -28.25289 -26.75278 -25.59210 -24.25302 -22.65631 -22.46761 -21.08972 -19.79403 -18.77026 -17.68251 -16.78092 -16.45980 -16.04008 -15.03762 -14.86207 -14.71344 -14.39549 -14.18217 -13.84778 -13.61848 -13.36704 -13.26695 -12.99126 -12.82990 -12.65334 -12.23478 -12.04219 -11.79266 -11.74981 -11.44338 -11.28026 -11.01891 -10.90447 -10.72357 -10.48550 -10.39789 -10.22042 -10.02656 -9.86009 -9.49950 -9.19412 -8.77222 -8.49043 -8.07929 -7.40568 -6.07157 -3.99976 1.31438 1.44768 3.25009 3.34939 3.36876 3.44131 3.76655 4.41367 4.59670 4.76221 4.85697 4.95513 5.06146 5.12579 5.20848 5.28004 5.32906 5.46990 5.51697 5.53996 5.57465 5.66059 5.77805 5.80191 5.84553 5.87388 5.99086 5.99826 6.10043 6.19407 6.24056 6.32035 6.47266 6.48187 6.50894 6.53602 6.55615 6.67526 6.76140 6.81303 6.93539 7.22005 7.56779 7.76584 7.94427 8.22878 8.74241 9.09764 9.59226 11.06236 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.003964 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.272937 B = 7062.410104 C = 7484.763375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.129 4.129 3 C 0.195 3.805 4 H -0.003 1.003 5 C -0.501 4.501 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.670 5.670 14 C 0.098 3.902 15 H 0.091 0.909 16 C -0.188 4.188 17 C -0.108 4.108 18 H 0.093 0.907 19 C 0.068 3.932 20 O -0.317 6.317 21 C 0.136 3.864 22 C -0.154 4.154 23 C -0.094 4.094 24 C -0.159 4.159 25 C -0.086 4.086 26 C -0.152 4.152 27 C -0.080 4.080 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.262 0.738 34 H 0.318 0.682 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 11.425 9.464 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.168 4.168 3 C 0.087 3.913 4 H 0.015 0.985 5 C -0.539 4.539 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.178 1.178 13 N -0.301 5.301 14 C -0.013 4.013 15 H 0.109 0.891 16 C -0.247 4.247 17 C -0.128 4.128 18 H 0.111 0.889 19 C -0.007 4.007 20 O -0.230 6.230 21 C 0.091 3.909 22 C -0.173 4.173 23 C -0.112 4.112 24 C -0.177 4.177 25 C -0.105 4.105 26 C -0.153 4.153 27 C -0.117 4.117 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.101 0.899 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.607 11.195 9.718 18.228 hybrid contribution -1.219 -0.030 -1.753 2.135 sum -11.826 11.164 7.965 18.109 Atomic orbital electron populations 1.21923 0.98660 1.00339 1.00366 1.22123 0.92376 1.00206 1.02082 1.19526 0.96650 0.89455 0.85673 0.98541 1.20991 0.89231 1.41607 1.02103 0.90275 1.24916 0.94681 0.94839 0.98560 1.69970 1.11335 1.44409 1.27468 0.87302 0.82221 0.77846 0.84148 1.20907 1.21452 1.17823 1.60588 1.36678 1.01768 1.31026 1.21353 0.95230 0.89610 0.95098 0.89078 1.22689 0.98861 1.01704 1.01435 1.21796 1.01009 0.93552 0.96404 0.88851 1.23162 0.96822 0.99347 0.81360 1.85996 1.82745 1.19747 1.34530 1.18782 0.95325 0.83382 0.93455 1.20589 1.06049 0.94640 0.96019 1.20867 0.98526 0.93300 0.98470 1.20965 1.04174 0.99963 0.92597 1.20922 0.98296 0.93344 0.97895 1.19949 1.05360 0.94920 0.95103 1.20681 1.03168 0.94839 0.93025 0.93536 0.93822 0.93758 0.92127 0.91832 0.92815 0.86389 0.92516 0.92885 0.92399 0.92368 0.86816 0.85512 0.85803 0.86214 0.85990 0.89894 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.78 37.16 0.36 -2.19 16 2 C -0.13 -2.66 4.75 -26.73 -0.13 -2.79 16 3 C 0.20 4.30 1.36 -68.86 -0.09 4.21 16 4 H 0.00 -0.07 5.96 -51.93 -0.31 -0.38 16 5 C -0.50 -13.62 8.97 -34.44 -0.31 -13.93 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.02 5.33 -17.82 -0.10 1.92 16 8 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 9 Si 0.86 20.67 25.77 -169.99 -4.38 16.29 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.25 -5.69 5.47 56.52 0.31 -5.38 16 13 N -0.67 -12.48 5.55 -100.95 -0.56 -13.04 16 14 C 0.10 1.60 2.23 -67.71 -0.15 1.45 16 15 H 0.09 1.74 7.63 -51.93 -0.40 1.34 16 16 C -0.19 -2.55 8.45 37.16 0.31 -2.23 16 17 C -0.11 -1.62 2.44 -90.37 -0.22 -1.84 16 18 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 19 C 0.07 0.93 5.64 37.37 0.21 1.14 16 20 O -0.32 -4.79 10.27 -19.26 -0.20 -4.99 16 21 C 0.14 1.95 6.47 -39.20 -0.25 1.69 16 22 C -0.15 -1.92 9.94 -39.34 -0.39 -2.31 16 23 C -0.09 -1.00 10.04 -39.66 -0.40 -1.39 16 24 C -0.16 -1.69 10.04 -39.61 -0.40 -2.08 16 25 C -0.09 -1.01 9.67 -39.53 -0.38 -1.40 16 26 C -0.15 -2.05 5.75 -104.44 -0.60 -2.65 16 27 C -0.08 -1.05 5.09 -27.81 -0.14 -1.19 16 28 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.34 4.94 -51.93 -0.26 1.08 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.32 5.21 5.57 -39.29 -0.22 4.99 16 35 H 0.06 0.83 7.59 -51.93 -0.39 0.43 16 36 H 0.05 0.64 6.24 -51.93 -0.32 0.31 16 37 H 0.06 0.70 6.50 -51.93 -0.34 0.36 16 38 H 0.06 0.72 6.59 -51.93 -0.34 0.38 16 39 H 0.11 1.56 7.15 -51.93 -0.37 1.19 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 0.94 6.01 -51.93 -0.31 0.63 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -29.93 341.10 -8.95 -38.87 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.05 Total: 7.52 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.67 Total: -23.58 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.21 Total: -39.25 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.20 Total: -4.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.38 Total: 16.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.93 -8.95 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.501 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds