Wall clock time and date at job start Tue Mar 31 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47201 * 306.23421 * 3 2 1 5 5 C 1.50698 * 109.47297 * 186.23352 * 3 2 1 6 6 H 1.08002 * 120.00371 * 244.86719 * 5 3 2 7 7 C 1.37880 * 119.99853 * 64.86246 * 5 3 2 8 8 N 1.31513 * 120.00109 * 194.58967 * 7 5 3 9 9 Si 1.86805 * 119.99809 * 14.59398 * 7 5 3 10 10 H 1.48496 * 109.47157 * 92.41198 * 9 7 5 11 11 H 1.48503 * 109.46933 * 212.41103 * 9 7 5 12 12 H 1.48502 * 109.47027 * 332.40884 * 9 7 5 13 13 N 1.46909 * 109.47514 * 66.23353 * 3 2 1 14 14 C 1.46897 * 111.00054 * 205.39273 * 13 3 2 15 15 H 1.08996 * 109.47433 * 327.57650 * 14 13 3 16 16 C 1.53002 * 109.46915 * 87.58117 * 14 13 3 17 17 C 1.52998 * 109.46851 * 207.57623 * 14 13 3 18 18 H 1.08997 * 109.69774 * 59.44647 * 17 14 13 19 19 C 1.53408 * 109.69864 * 298.84537 * 17 14 13 20 20 O 1.42825 * 108.37430 * 175.58737 * 19 17 14 21 21 C 1.35847 * 117.85893 * 49.21063 * 20 19 17 22 22 C 1.39141 * 118.49815 * 163.02389 * 21 20 19 23 23 C 1.37970 * 120.21499 * 179.59303 * 22 21 20 24 24 C 1.38291 * 119.95778 * 359.97438 * 23 22 21 25 25 C 1.38105 * 119.98071 * 0.06155 * 24 23 22 26 26 C 1.38373 * 121.80223 * 342.73264 * 21 20 19 27 27 C 1.50766 * 121.40219 * 0.52406 * 26 21 20 28 28 H 1.08997 * 109.46837 * 301.75995 * 1 2 3 29 29 H 1.08998 * 109.46617 * 61.75960 * 1 2 3 30 30 H 1.09000 * 109.47011 * 181.75992 * 1 2 3 31 31 H 1.08994 * 109.47161 * 239.99678 * 2 1 3 32 32 H 1.09001 * 109.46607 * 119.99871 * 2 1 3 33 33 H 0.96999 * 119.99678 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99561 * 329.35136 * 13 3 2 35 35 H 1.09005 * 109.46890 * 305.58345 * 16 14 13 36 36 H 1.08990 * 109.47483 * 65.58227 * 16 14 13 37 37 H 1.09001 * 109.46714 * 185.59156 * 16 14 13 38 38 H 1.09006 * 109.68665 * 295.31145 * 19 17 14 39 39 H 1.08997 * 109.68121 * 55.86725 * 19 17 14 40 40 H 1.07999 * 119.89137 * 359.59983 * 22 21 20 41 41 H 1.07999 * 120.02049 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.01114 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.83949 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.43707 * 222.10423 * 27 26 21 45 45 H 1.09004 * 109.40199 * 102.21573 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5885 1.9875 -0.8289 5 6 3.5391 1.4453 -0.1543 6 1 4.1638 1.8126 0.6466 7 6 4.1133 0.9788 -1.3178 8 7 5.4001 0.7100 -1.3543 9 14 3.0632 0.7287 -2.8424 10 1 3.0959 1.9590 -3.6733 11 1 3.5956 -0.4135 -3.6281 12 1 1.6636 0.4416 -2.4378 13 7 1.6771 2.0903 1.2676 14 6 1.5859 3.5476 1.1068 15 1 2.3058 3.8762 0.3574 16 6 0.1729 3.9234 0.6560 17 6 1.8931 4.2281 2.4422 18 1 2.8954 3.9549 2.7718 19 6 0.8650 3.7913 3.4937 20 8 1.2371 4.3594 4.7502 21 6 1.5231 5.6869 4.7870 22 6 1.5345 6.3297 6.0210 23 6 1.8287 7.6753 6.1002 24 6 2.1140 8.3887 4.9504 25 6 2.1028 7.7540 3.7239 26 6 1.8059 6.4040 3.6378 27 6 1.7993 5.7475 2.2806 28 1 -0.3633 0.5409 0.8738 29 1 -0.3632 0.4863 -0.9054 30 1 -0.3633 -1.0272 0.0316 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.8041 0.3822 -2.1730 34 1 0.8160 1.7121 1.6333 35 1 -0.0832 3.3620 -0.2426 36 1 -0.5368 3.6848 1.4481 37 1 0.1321 4.9913 0.4411 38 1 -0.1253 4.1467 3.2089 39 1 0.8575 2.7041 3.5702 40 1 1.3124 5.7734 6.9196 41 1 1.8371 8.1709 7.0597 42 1 2.3448 9.4419 5.0115 43 1 2.3256 8.3135 2.8273 44 1 2.6511 6.1038 1.7012 45 1 0.8755 6.0006 1.7604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893606833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:10 Heat of formation + Delta-G solvation = -39.813889 kcal Electronic energy + Delta-G solvation = -23603.913965 eV Core-core repulsion = 20392.176117 eV Total energy + Delta-G solvation = -3211.737847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74134 -39.25376 -38.19499 -36.39895 -34.27946 -33.39277 -31.23655 -31.10689 -29.57571 -28.44545 -26.67545 -25.45432 -24.24788 -23.47035 -22.20698 -21.54189 -19.93373 -18.83473 -18.70959 -17.52555 -17.18398 -16.62857 -16.17465 -15.95019 -15.72643 -15.46339 -15.04264 -14.79383 -14.70576 -14.47041 -14.34325 -14.12467 -13.91785 -13.65964 -13.44169 -13.17964 -12.73629 -12.69627 -12.57504 -12.47981 -12.23223 -12.12057 -12.02825 -11.84646 -11.56466 -11.48123 -11.29584 -11.11891 -11.00414 -10.62433 -9.68748 -9.05592 -8.96582 -8.26227 -6.23335 0.40766 0.51944 1.32822 1.36207 1.45680 2.36128 2.42343 2.84484 3.06813 3.34406 3.70983 3.77363 3.90123 4.00416 4.16007 4.25551 4.29262 4.34042 4.39773 4.42568 4.46466 4.50147 4.52736 4.60702 4.64195 4.76256 4.82479 4.85257 4.98581 5.05032 5.09395 5.13340 5.14554 5.19421 5.20000 5.34624 5.40582 5.43050 5.55735 5.57883 5.63108 5.82586 5.93566 6.12864 6.54159 6.56740 6.83180 7.02021 7.40336 8.91537 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.003964 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.272937 B = 7062.410104 C = 7484.763375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.203 3.797 4 H -0.001 1.001 5 C -0.503 4.503 6 H 0.025 0.975 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.926 3.074 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.222 1.222 13 N -0.681 5.681 14 C 0.100 3.900 15 H 0.055 0.945 16 C -0.179 4.179 17 C -0.101 4.101 18 H 0.051 0.949 19 C 0.073 3.927 20 O -0.334 6.334 21 C 0.105 3.895 22 C -0.166 4.166 23 C -0.090 4.090 24 C -0.156 4.156 25 C -0.095 4.095 26 C -0.170 4.170 27 C -0.074 4.074 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.262 0.738 34 H 0.335 0.665 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.077 0.923 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 12.884 9.624 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.094 3.906 4 H 0.017 0.983 5 C -0.541 4.541 6 H 0.044 0.956 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.750 3.250 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.145 1.145 13 N -0.313 5.313 14 C -0.010 4.010 15 H 0.073 0.927 16 C -0.237 4.237 17 C -0.120 4.120 18 H 0.070 0.930 19 C -0.002 4.002 20 O -0.248 6.248 21 C 0.060 3.940 22 C -0.185 4.185 23 C -0.108 4.108 24 C -0.174 4.174 25 C -0.113 4.113 26 C -0.171 4.171 27 C -0.111 4.111 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.974 12.668 9.904 21.303 hybrid contribution -0.057 -0.385 -1.635 1.681 sum -14.031 12.283 8.268 20.398 Atomic orbital electron populations 1.21836 0.94684 1.02250 1.01632 1.22004 0.95880 0.98160 1.00828 1.19281 0.93019 0.91096 0.87190 0.98344 1.21278 0.92005 1.40321 1.00509 0.95643 1.25783 0.95873 0.94760 1.02070 1.70135 1.13752 1.46618 1.28437 0.86199 0.81906 0.77565 0.79324 1.20639 1.21637 1.14460 1.60371 1.38143 1.03215 1.29616 1.21277 0.96594 0.88181 0.94951 0.92694 1.22580 0.96544 1.02831 1.01793 1.21606 0.99304 0.95053 0.96045 0.93023 1.23131 0.97117 0.99233 0.80697 1.85953 1.83339 1.20706 1.34844 1.19119 0.97087 0.83136 0.94617 1.20872 1.06215 0.95680 0.95713 1.21271 0.96974 0.92558 1.00016 1.21371 1.02624 1.01382 0.91990 1.21209 0.97948 0.92788 0.99348 1.20057 1.06428 0.95854 0.94715 1.20621 1.03822 0.93144 0.93511 0.91513 0.93253 0.91653 0.93780 0.92909 0.92867 0.84460 0.92993 0.90657 0.90574 0.90174 0.87155 0.84714 0.82725 0.83300 0.84320 0.90482 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.78 71.99 0.70 -3.57 16 2 C -0.13 -5.19 4.75 30.60 0.15 -5.04 16 3 C 0.20 8.97 1.36 44.16 0.06 9.03 16 4 H 0.00 -0.04 5.96 -2.39 -0.01 -0.06 16 5 C -0.50 -28.67 8.97 25.60 0.23 -28.44 16 6 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 7 C 0.01 0.69 5.33 84.66 0.45 1.15 16 8 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 9 Si 0.93 43.17 25.77 68.60 1.77 44.94 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.22 -9.13 5.47 99.48 0.54 -8.59 16 13 N -0.68 -25.50 5.55 -473.31 -2.63 -28.13 16 14 C 0.10 3.30 2.23 44.92 0.10 3.40 16 15 H 0.05 2.19 7.63 -2.39 -0.02 2.17 16 16 C -0.18 -4.40 8.45 71.98 0.61 -3.79 16 17 C -0.10 -3.09 2.44 -10.63 -0.03 -3.12 16 18 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 19 C 0.07 1.97 5.64 72.12 0.41 2.38 16 20 O -0.33 -10.16 10.27 -91.83 -0.94 -11.10 16 21 C 0.11 2.97 6.47 22.52 0.15 3.12 16 22 C -0.17 -3.93 9.94 22.42 0.22 -3.71 16 23 C -0.09 -1.69 10.04 22.22 0.22 -1.46 16 24 C -0.16 -2.86 10.04 22.25 0.22 -2.64 16 25 C -0.09 -2.06 9.67 22.30 0.22 -1.84 16 26 C -0.17 -4.45 5.75 -19.75 -0.11 -4.57 16 27 C -0.07 -1.92 5.09 29.89 0.15 -1.77 16 28 H 0.07 1.67 6.44 -2.39 -0.02 1.66 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.88 4.94 -2.39 -0.01 1.87 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.34 10.47 5.57 -89.69 -0.50 9.97 16 35 H 0.05 1.35 7.59 -2.38 -0.02 1.33 16 36 H 0.07 1.53 6.24 -2.39 -0.01 1.51 16 37 H 0.08 1.61 6.50 -2.39 -0.02 1.59 16 38 H 0.08 1.81 6.59 -2.38 -0.02 1.79 16 39 H 0.11 2.99 7.15 -2.39 -0.02 2.98 16 40 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.10 2.14 6.01 -2.39 -0.01 2.12 16 Total: -1.00 -69.65 341.10 2.56 -67.09 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.32 Total: 27.88 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.75 Total: -40.87 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.33 Total: -87.94 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.94 Total: -11.10 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.77 Total: 44.94 kcal Total: -69.65 2.56 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.275 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds