Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 H 1.09003 * 109.47476 * 305.65771 * 3 2 1 5 5 C 1.50693 * 109.47064 * 185.65493 * 3 2 1 6 6 H 1.08001 * 120.00548 * 239.99612 * 5 3 2 7 7 C 1.37877 * 119.99854 * 60.00416 * 5 3 2 8 8 N 1.31508 * 120.00530 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47248 * 89.99264 * 9 7 5 11 11 H 1.48500 * 109.47123 * 209.99572 * 9 7 5 12 12 H 1.48505 * 109.46826 * 329.99671 * 9 7 5 13 13 N 1.46902 * 109.47021 * 65.65628 * 3 2 1 14 14 C 1.46903 * 110.99870 * 209.05844 * 13 3 2 15 15 H 1.08998 * 109.47140 * 32.33320 * 14 13 3 16 16 C 1.52995 * 109.47268 * 272.33258 * 14 13 3 17 17 C 1.53001 * 109.46941 * 152.33057 * 14 13 3 18 18 H 1.08999 * 109.69415 * 305.56098 * 17 14 13 19 19 C 1.53405 * 109.69878 * 66.16088 * 17 14 13 20 20 O 1.42822 * 108.40316 * 184.35898 * 19 17 14 21 21 C 1.35843 * 117.87456 * 310.84130 * 20 19 17 22 22 C 1.39149 * 118.50961 * 197.05687 * 21 20 19 23 23 C 1.37975 * 120.21267 * 180.52261 * 22 21 20 24 24 C 1.38290 * 119.95857 * 0.25107 * 23 22 21 25 25 C 1.38102 * 119.98227 * 359.35453 * 24 23 22 26 26 C 1.38377 * 121.79660 * 17.37520 * 21 20 19 27 27 C 1.50762 * 121.40134 * 359.19239 * 26 21 20 28 28 H 1.08998 * 109.46979 * 54.17998 * 1 2 3 29 29 H 1.08996 * 109.47552 * 174.18310 * 1 2 3 30 30 H 1.09003 * 109.46894 * 294.18379 * 1 2 3 31 31 H 1.09003 * 109.46806 * 240.00258 * 2 1 3 32 32 H 1.08998 * 109.47175 * 120.00287 * 2 1 3 33 33 H 0.96998 * 120.00682 * 179.97438 * 8 7 5 34 34 H 1.00901 * 110.99867 * 333.00884 * 13 3 2 35 35 H 1.08998 * 109.47167 * 180.02562 * 16 14 13 36 36 H 1.09011 * 109.46774 * 299.99968 * 16 14 13 37 37 H 1.08997 * 109.47585 * 59.99757 * 16 14 13 38 38 H 1.09000 * 109.67516 * 304.08601 * 19 17 14 39 39 H 1.08994 * 109.67780 * 64.59261 * 19 17 14 40 40 H 1.07994 * 119.89469 * 0.49557 * 22 21 20 41 41 H 1.07994 * 120.01462 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00625 * 179.64416 * 24 23 22 43 43 H 1.08003 * 119.83999 * 180.28510 * 25 24 23 44 44 H 1.09006 * 109.44046 * 138.15255 * 27 26 21 45 45 H 1.09005 * 109.44010 * 258.03022 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9848 -0.8350 5 6 3.5405 1.4447 -0.1400 6 1 4.1542 1.8864 0.6312 7 6 4.1299 0.8831 -1.2528 8 7 3.3827 0.3450 -2.1917 9 14 5.9899 0.8852 -1.4260 10 1 6.5453 -0.3491 -0.8153 11 1 6.3529 0.9321 -2.8652 12 1 6.5500 2.0745 -0.7352 13 7 1.6650 2.0944 1.2619 14 6 1.4905 3.5411 1.0754 15 1 1.1141 3.7352 0.0711 16 6 2.8362 4.2452 1.2605 17 6 0.4915 4.0712 2.1058 18 1 -0.4371 3.5040 2.0427 19 6 1.0836 3.9404 3.5150 20 8 0.0926 4.3465 4.4599 21 6 -0.5448 5.5266 4.2443 22 6 -1.2323 6.1130 5.3024 23 6 -1.9010 7.3060 5.1197 24 6 -1.8930 7.9194 3.8803 25 6 -1.2048 7.3444 2.8301 26 6 -0.5306 6.1476 3.0078 27 6 0.2109 5.5520 1.8381 28 1 -0.3633 0.6014 -0.8333 29 1 -0.3634 -1.0223 -0.1041 30 1 -0.3633 0.4210 0.9375 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7973 -0.0498 -2.9747 34 1 0.8329 1.6771 1.6511 35 1 2.7066 5.3186 1.1226 36 1 3.2126 4.0510 2.2650 37 1 3.5480 3.8675 0.5265 38 1 1.3644 2.9036 3.7002 39 1 1.9614 4.5801 3.6051 40 1 -1.2430 5.6327 6.2696 41 1 -2.4339 7.7582 5.9430 42 1 -2.4209 8.8504 3.7350 43 1 -1.1963 7.8278 1.8644 44 1 -0.3949 5.6493 0.9370 45 1 1.1540 6.0806 1.6992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893606834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = -27.054677 kcal Electronic energy + Delta-G solvation = -23537.015328 eV Core-core repulsion = 20325.830762 eV Total energy + Delta-G solvation = -3211.184566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72896 -37.89311 -36.92144 -34.83913 -32.51589 -31.61031 -30.28977 -29.78970 -27.85883 -26.56836 -25.66694 -23.97368 -22.77159 -22.53135 -20.89597 -19.56819 -18.80581 -17.72440 -16.46219 -16.37487 -15.96569 -15.05351 -14.82018 -14.58640 -14.50810 -13.92089 -13.86454 -13.66398 -13.18964 -13.14764 -12.94662 -12.64189 -12.26634 -12.18794 -11.72171 -11.59385 -11.43587 -11.20242 -11.10879 -10.91958 -10.85473 -10.65574 -10.51437 -10.36233 -10.11731 -9.86130 -9.66503 -9.44973 -9.04866 -8.81857 -8.33941 -8.12114 -7.29548 -5.97161 -4.00426 1.26623 1.40154 3.31552 3.38473 3.41450 3.41877 3.72824 4.43028 4.60899 4.71223 4.78900 4.94684 5.00663 5.19846 5.26337 5.30117 5.36319 5.46241 5.50495 5.66314 5.72104 5.78981 5.92552 6.00886 6.09173 6.09776 6.13875 6.15918 6.27643 6.32730 6.39365 6.43766 6.46038 6.50175 6.68199 6.76174 6.82636 7.04292 7.08639 7.18898 7.47202 7.53978 7.76794 7.92124 8.29328 8.39405 8.72697 9.06960 9.64019 11.08221 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.003698 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.777013 B = 7569.305971 C = 7943.894775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.104 3.896 15 H 0.042 0.958 16 C -0.144 4.144 17 C -0.126 4.126 18 H 0.077 0.923 19 C 0.070 3.930 20 O -0.320 6.320 21 C 0.136 3.864 22 C -0.154 4.154 23 C -0.093 4.093 24 C -0.159 4.159 25 C -0.087 4.087 26 C -0.154 4.154 27 C -0.077 4.077 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.318 0.682 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 11.671 10.225 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.527 4.527 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.007 4.007 15 H 0.060 0.940 16 C -0.202 4.202 17 C -0.145 4.145 18 H 0.095 0.905 19 C -0.004 4.004 20 O -0.234 6.234 21 C 0.091 3.909 22 C -0.173 4.173 23 C -0.111 4.111 24 C -0.177 4.177 25 C -0.105 4.105 26 C -0.155 4.155 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.086 0.914 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.097 0.903 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.511 11.483 10.405 17.680 hybrid contribution 0.165 0.007 -0.957 0.971 sum -8.346 11.490 9.448 17.057 Atomic orbital electron populations 1.21881 0.99655 0.99720 0.99463 1.21813 0.91167 1.00587 1.03102 1.19243 0.95565 0.89844 0.84074 0.97863 1.21250 0.91232 1.36143 1.04117 0.91747 1.24969 0.97918 0.95768 0.95997 1.69864 1.34615 1.39599 1.09604 0.86589 0.86018 0.78389 0.76921 1.20839 1.21529 1.19992 1.60825 1.38327 1.00729 1.31586 1.21313 0.93816 0.90324 0.95207 0.94031 1.21986 0.98033 0.97287 1.02900 1.22068 0.99944 0.96058 0.96449 0.90507 1.23193 0.88391 1.02213 0.86586 1.85997 1.52125 1.34243 1.50996 1.18789 0.93596 0.85997 0.92561 1.20603 1.01954 0.96736 0.98004 1.20876 0.98333 0.94594 0.97326 1.20967 1.02269 1.01031 0.93435 1.20917 0.96154 0.94328 0.99068 1.19957 1.03478 0.97558 0.94539 1.20632 1.00221 0.95096 0.95432 0.93946 0.94404 0.94710 0.88237 0.94073 0.93143 0.86428 0.94256 0.92885 0.90137 0.86234 0.91450 0.85478 0.85781 0.86194 0.86000 0.90271 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.66 37.16 0.36 -2.48 16 2 C -0.13 -2.93 5.33 -26.73 -0.14 -3.07 16 3 C 0.22 5.19 2.03 -68.87 -0.14 5.05 16 4 H 0.00 0.10 7.32 -51.93 -0.38 -0.28 16 5 C -0.49 -12.82 7.45 -34.44 -0.26 -13.07 16 6 H 0.06 1.71 6.98 -52.49 -0.37 1.34 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -24.98 11.29 55.43 0.63 -24.36 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.36 5.63 -100.96 -0.57 -13.93 16 14 C 0.10 1.78 2.42 -67.71 -0.16 1.62 16 15 H 0.04 0.79 7.33 -51.93 -0.38 0.40 16 16 C -0.14 -2.46 8.40 37.15 0.31 -2.15 16 17 C -0.13 -1.82 2.10 -90.37 -0.19 -2.01 16 18 H 0.08 1.15 8.02 -51.93 -0.42 0.74 16 19 C 0.07 1.00 5.56 37.37 0.21 1.21 16 20 O -0.32 -4.75 10.27 -19.25 -0.20 -4.95 16 21 C 0.14 1.90 6.47 -39.19 -0.25 1.64 16 22 C -0.15 -1.86 9.94 -39.34 -0.39 -2.25 16 23 C -0.09 -0.96 10.04 -39.66 -0.40 -1.35 16 24 C -0.16 -1.62 10.04 -39.61 -0.40 -2.02 16 25 C -0.09 -0.98 9.67 -39.53 -0.38 -1.36 16 26 C -0.15 -2.02 5.75 -104.44 -0.60 -2.62 16 27 C -0.08 -0.99 5.13 -27.81 -0.14 -1.13 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.59 6.67 -51.93 -0.35 0.24 16 31 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.32 5.80 6.09 -39.29 -0.24 5.57 16 35 H 0.04 0.57 6.35 -51.93 -0.33 0.24 16 36 H 0.05 0.87 6.46 -51.92 -0.34 0.53 16 37 H 0.08 1.63 6.20 -51.93 -0.32 1.31 16 38 H 0.12 1.74 7.72 -51.93 -0.40 1.34 16 39 H 0.07 0.94 6.66 -51.93 -0.35 0.59 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.07 6.12 -51.93 -0.32 0.75 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -27.67 344.30 -9.65 -37.32 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.01 Total: 7.32 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.67 Total: -22.64 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.06 Total: -38.29 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.67 -9.65 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.270 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds