Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 H 1.09003 * 109.47476 * 305.65771 * 3 2 1 5 5 C 1.50693 * 109.47064 * 185.65493 * 3 2 1 6 6 H 1.08001 * 120.00548 * 239.99612 * 5 3 2 7 7 C 1.37877 * 119.99854 * 60.00416 * 5 3 2 8 8 N 1.31508 * 120.00530 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47248 * 89.99264 * 9 7 5 11 11 H 1.48500 * 109.47123 * 209.99572 * 9 7 5 12 12 H 1.48505 * 109.46826 * 329.99671 * 9 7 5 13 13 N 1.46902 * 109.47021 * 65.65628 * 3 2 1 14 14 C 1.46903 * 110.99870 * 209.05844 * 13 3 2 15 15 H 1.08998 * 109.47140 * 32.33320 * 14 13 3 16 16 C 1.52995 * 109.47268 * 272.33258 * 14 13 3 17 17 C 1.53001 * 109.46941 * 152.33057 * 14 13 3 18 18 H 1.08999 * 109.69415 * 305.56098 * 17 14 13 19 19 C 1.53405 * 109.69878 * 66.16088 * 17 14 13 20 20 O 1.42822 * 108.40316 * 184.35898 * 19 17 14 21 21 C 1.35843 * 117.87456 * 310.84130 * 20 19 17 22 22 C 1.39149 * 118.50961 * 197.05687 * 21 20 19 23 23 C 1.37975 * 120.21267 * 180.52261 * 22 21 20 24 24 C 1.38290 * 119.95857 * 0.25107 * 23 22 21 25 25 C 1.38102 * 119.98227 * 359.35453 * 24 23 22 26 26 C 1.38377 * 121.79660 * 17.37520 * 21 20 19 27 27 C 1.50762 * 121.40134 * 359.19239 * 26 21 20 28 28 H 1.08998 * 109.46979 * 54.17998 * 1 2 3 29 29 H 1.08996 * 109.47552 * 174.18310 * 1 2 3 30 30 H 1.09003 * 109.46894 * 294.18379 * 1 2 3 31 31 H 1.09003 * 109.46806 * 240.00258 * 2 1 3 32 32 H 1.08998 * 109.47175 * 120.00287 * 2 1 3 33 33 H 0.96998 * 120.00682 * 179.97438 * 8 7 5 34 34 H 1.00901 * 110.99867 * 333.00884 * 13 3 2 35 35 H 1.08998 * 109.47167 * 180.02562 * 16 14 13 36 36 H 1.09011 * 109.46774 * 299.99968 * 16 14 13 37 37 H 1.08997 * 109.47585 * 59.99757 * 16 14 13 38 38 H 1.09000 * 109.67516 * 304.08601 * 19 17 14 39 39 H 1.08994 * 109.67780 * 64.59261 * 19 17 14 40 40 H 1.07994 * 119.89469 * 0.49557 * 22 21 20 41 41 H 1.07994 * 120.01462 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00625 * 179.64416 * 24 23 22 43 43 H 1.08003 * 119.83999 * 180.28510 * 25 24 23 44 44 H 1.09006 * 109.44046 * 138.15255 * 27 26 21 45 45 H 1.09005 * 109.44010 * 258.03022 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9848 -0.8350 5 6 3.5405 1.4447 -0.1400 6 1 4.1542 1.8864 0.6312 7 6 4.1299 0.8831 -1.2528 8 7 3.3827 0.3450 -2.1917 9 14 5.9899 0.8852 -1.4260 10 1 6.5453 -0.3491 -0.8153 11 1 6.3529 0.9321 -2.8652 12 1 6.5500 2.0745 -0.7352 13 7 1.6650 2.0944 1.2619 14 6 1.4905 3.5411 1.0754 15 1 1.1141 3.7352 0.0711 16 6 2.8362 4.2452 1.2605 17 6 0.4915 4.0712 2.1058 18 1 -0.4371 3.5040 2.0427 19 6 1.0836 3.9404 3.5150 20 8 0.0926 4.3465 4.4599 21 6 -0.5448 5.5266 4.2443 22 6 -1.2323 6.1130 5.3024 23 6 -1.9010 7.3060 5.1197 24 6 -1.8930 7.9194 3.8803 25 6 -1.2048 7.3444 2.8301 26 6 -0.5306 6.1476 3.0078 27 6 0.2109 5.5520 1.8381 28 1 -0.3633 0.6014 -0.8333 29 1 -0.3634 -1.0223 -0.1041 30 1 -0.3633 0.4210 0.9375 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7973 -0.0498 -2.9747 34 1 0.8329 1.6771 1.6511 35 1 2.7066 5.3186 1.1226 36 1 3.2126 4.0510 2.2650 37 1 3.5480 3.8675 0.5265 38 1 1.3644 2.9036 3.7002 39 1 1.9614 4.5801 3.6051 40 1 -1.2430 5.6327 6.2696 41 1 -2.4339 7.7582 5.9430 42 1 -2.4209 8.8504 3.7350 43 1 -1.1963 7.8278 1.8644 44 1 -0.3949 5.6493 0.9370 45 1 1.1540 6.0806 1.6992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893606834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -41.609077 kcal Electronic energy + Delta-G solvation = -23537.646454 eV Core-core repulsion = 20325.830762 eV Total energy + Delta-G solvation = -3211.815693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75291 -39.12907 -38.14384 -36.34206 -34.09675 -33.19374 -31.22502 -31.05640 -29.24980 -28.43353 -26.72495 -25.29051 -24.44219 -23.45975 -22.05662 -21.39606 -20.01482 -18.73763 -18.32796 -17.51411 -17.10329 -16.64130 -16.23774 -15.72348 -15.69912 -15.55614 -15.01441 -14.78051 -14.54148 -14.37011 -14.29389 -13.95152 -13.76706 -13.53326 -13.06678 -12.99017 -12.79770 -12.66791 -12.63179 -12.50672 -12.31452 -12.04286 -11.87896 -11.70172 -11.63162 -11.47386 -11.40589 -10.98434 -10.91648 -10.37842 -9.69197 -9.07580 -8.99685 -8.02554 -6.12163 0.40462 0.51542 1.42203 1.44000 1.52958 2.40640 2.46145 2.84812 3.22216 3.40906 3.68502 3.69887 3.91128 3.96484 4.13074 4.24704 4.33227 4.47614 4.47983 4.51452 4.55835 4.58683 4.62115 4.65558 4.71725 4.82404 4.84911 4.92960 5.06418 5.10720 5.11255 5.18597 5.22296 5.25968 5.38518 5.41619 5.57622 5.59022 5.63137 5.66191 5.79904 5.92335 5.95059 6.40757 6.53414 6.56951 6.99743 7.02127 7.55784 9.00759 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.003698 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.777013 B = 7569.305971 C = 7943.894775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.228 3.772 4 H -0.030 1.030 5 C -0.497 4.497 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.679 5.679 14 C 0.108 3.892 15 H 0.024 0.976 16 C -0.138 4.138 17 C -0.113 4.113 18 H 0.071 0.929 19 C 0.076 3.924 20 O -0.332 6.332 21 C 0.105 3.895 22 C -0.165 4.165 23 C -0.090 4.090 24 C -0.155 4.155 25 C -0.094 4.094 26 C -0.169 4.169 27 C -0.072 4.072 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.257 0.743 34 H 0.327 0.673 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 13.437 11.584 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.120 3.880 4 H -0.013 1.013 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.312 5.312 14 C -0.003 4.003 15 H 0.042 0.958 16 C -0.196 4.196 17 C -0.132 4.132 18 H 0.090 0.910 19 C 0.001 3.999 20 O -0.247 6.247 21 C 0.060 3.940 22 C -0.184 4.184 23 C -0.108 4.108 24 C -0.173 4.173 25 C -0.112 4.112 26 C -0.170 4.170 27 C -0.109 4.109 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.104 0.896 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.515 13.262 11.782 20.130 hybrid contribution 0.405 -0.451 -1.325 1.457 sum -9.111 12.811 10.457 18.880 Atomic orbital electron populations 1.21744 0.96558 1.00979 1.00324 1.21645 0.93968 0.99447 1.01236 1.18986 0.94186 0.90309 0.84543 1.01252 1.21516 0.92686 1.35551 1.03840 0.92453 1.25654 1.01743 0.95745 0.95924 1.69999 1.35999 1.40389 1.09958 0.85683 0.81507 0.78415 0.76749 1.20564 1.21419 1.19457 1.60706 1.39010 1.02087 1.29365 1.21275 0.94792 0.88905 0.95301 0.95831 1.21902 0.96896 0.98744 1.02026 1.21871 0.98573 0.97132 0.95604 0.91021 1.23067 0.88556 1.01911 0.86357 1.85968 1.52435 1.35224 1.51048 1.19123 0.94927 0.86234 0.93708 1.20874 1.02002 0.97525 0.97990 1.21274 0.97422 0.93672 0.98411 1.21372 1.01298 1.01730 0.92910 1.21202 0.95793 0.93775 1.00408 1.20021 1.04353 0.98509 0.94098 1.20580 1.00651 0.93709 0.95995 0.94651 0.92616 0.92542 0.91478 0.94422 0.93344 0.85471 0.91682 0.92267 0.93630 0.86910 0.91252 0.84728 0.82768 0.83312 0.84268 0.89645 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.66 71.98 0.70 -4.48 16 2 C -0.12 -5.77 5.33 30.59 0.16 -5.61 16 3 C 0.23 11.06 2.03 44.17 0.09 11.15 16 4 H -0.03 -1.64 7.32 -2.39 -0.02 -1.66 16 5 C -0.50 -26.71 7.45 25.60 0.19 -26.52 16 6 H 0.06 3.10 6.98 -2.91 -0.02 3.08 16 7 C 0.01 0.38 5.29 84.66 0.45 0.82 16 8 N -0.92 -52.77 11.29 21.45 0.24 -52.53 16 9 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.68 -26.90 5.63 -473.32 -2.67 -29.57 16 14 C 0.11 3.72 2.42 44.91 0.11 3.83 16 15 H 0.02 0.92 7.33 -2.39 -0.02 0.90 16 16 C -0.14 -4.70 8.40 71.98 0.60 -4.10 16 17 C -0.11 -3.19 2.10 -10.63 -0.02 -3.21 16 18 H 0.07 2.11 8.02 -2.39 -0.02 2.09 16 19 C 0.08 2.12 5.56 72.12 0.40 2.52 16 20 O -0.33 -9.69 10.27 -91.78 -0.94 -10.63 16 21 C 0.10 2.80 6.47 22.52 0.15 2.95 16 22 C -0.17 -3.68 9.94 22.43 0.22 -3.46 16 23 C -0.09 -1.56 10.04 22.22 0.22 -1.33 16 24 C -0.16 -2.62 10.04 22.25 0.22 -2.40 16 25 C -0.09 -1.88 9.67 22.30 0.22 -1.66 16 26 C -0.17 -4.16 5.75 -19.75 -0.11 -4.27 16 27 C -0.07 -1.78 5.13 29.89 0.15 -1.63 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.85 6.67 -2.39 -0.02 1.83 16 31 H 0.07 3.58 5.94 -2.39 -0.01 3.57 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.33 11.85 6.09 -89.69 -0.55 11.30 16 35 H 0.06 1.84 6.35 -2.39 -0.02 1.83 16 36 H 0.06 1.92 6.46 -2.38 -0.02 1.90 16 37 H 0.04 1.87 6.20 -2.39 -0.01 1.86 16 38 H 0.11 3.26 7.72 -2.39 -0.02 3.25 16 39 H 0.07 1.89 6.66 -2.39 -0.02 1.87 16 40 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.09 2.09 6.12 -2.38 -0.01 2.07 16 Total: -1.00 -60.77 344.30 2.84 -57.93 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.43 Total: 26.34 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.75 Total: -37.42 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.42 Total: -82.10 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.94 Total: -10.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.77 2.84 -57.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.322 kcal (2) G-P(sol) polarization free energy of solvation -60.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds