Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47056 * 2 1 4 4 H 1.08997 * 109.47416 * 175.12956 * 3 2 1 5 5 C 1.50702 * 109.47150 * 55.12812 * 3 2 1 6 6 H 1.08002 * 119.99839 * 240.00085 * 5 3 2 7 7 C 1.37871 * 119.99688 * 60.00076 * 5 3 2 8 8 N 1.31512 * 120.00555 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99809 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47289 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47389 * 119.99693 * 9 7 5 12 12 H 1.48501 * 109.47564 * 239.99991 * 9 7 5 13 13 N 1.46907 * 109.47196 * 295.13120 * 3 2 1 14 14 C 1.46902 * 110.99659 * 273.44860 * 13 3 2 15 15 H 1.08996 * 109.47104 * 34.79302 * 14 13 3 16 16 C 1.52996 * 109.47073 * 274.79344 * 14 13 3 17 17 C 1.53003 * 109.46936 * 154.79636 * 14 13 3 18 18 H 1.08996 * 109.69101 * 59.99918 * 17 14 13 19 19 C 1.53410 * 109.69295 * 299.44223 * 17 14 13 20 20 O 1.42816 * 108.37443 * 175.63727 * 19 17 14 21 21 C 1.35846 * 117.88200 * 49.16641 * 20 19 17 22 22 C 1.39143 * 118.49647 * 162.99042 * 21 20 19 23 23 C 1.37969 * 120.21361 * 179.58740 * 22 21 20 24 24 C 1.38284 * 119.95838 * 359.97438 * 23 22 21 25 25 C 1.38108 * 119.98524 * 0.07401 * 24 23 22 26 26 C 1.38369 * 121.80283 * 342.71871 * 21 20 19 27 27 C 1.50769 * 121.40808 * 0.54903 * 26 21 20 28 28 H 1.08993 * 109.47601 * 56.67611 * 1 2 3 29 29 H 1.09003 * 109.46949 * 176.67616 * 1 2 3 30 30 H 1.09002 * 109.46464 * 296.67356 * 1 2 3 31 31 H 1.08993 * 109.47276 * 120.00336 * 2 1 3 32 32 H 1.08997 * 109.46776 * 240.00077 * 2 1 3 33 33 H 0.96994 * 120.00319 * 180.02562 * 8 7 5 34 34 H 1.00901 * 111.00133 * 37.40193 * 13 3 2 35 35 H 1.09004 * 109.47249 * 300.00229 * 16 14 13 36 36 H 1.09005 * 109.47296 * 59.99858 * 16 14 13 37 37 H 1.08992 * 109.47390 * 180.02562 * 16 14 13 38 38 H 1.08996 * 109.68449 * 295.31146 * 19 17 14 39 39 H 1.08998 * 109.67881 * 55.87701 * 19 17 14 40 40 H 1.08004 * 119.89504 * 359.57408 * 22 21 20 41 41 H 1.07998 * 120.02185 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.00928 * 180.10169 * 24 23 22 43 43 H 1.07996 * 119.84132 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.43920 * 222.11444 * 27 26 21 45 45 H 1.08999 * 109.39341 * 102.22326 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1265 1.4438 0.0872 5 6 1.4416 2.1868 1.1657 6 1 0.8316 3.0611 0.9923 7 6 1.6728 1.7518 2.4534 8 7 2.4161 0.6875 2.6645 9 14 0.9317 2.6749 3.8983 10 1 0.1428 3.8287 3.3966 11 1 0.0432 1.7643 4.6643 12 1 2.0190 3.1652 4.7829 13 7 1.6487 2.1002 -1.2539 14 6 2.6401 1.8533 -2.3095 15 1 3.0524 0.8511 -2.1934 16 6 3.7660 2.8836 -2.2027 17 6 1.9676 1.9728 -3.6787 18 1 1.5539 2.9741 -3.7985 19 6 0.8465 0.9324 -3.7965 20 8 0.1730 1.1351 -5.0395 21 6 0.9306 1.2492 -6.1613 22 6 0.3141 1.0867 -7.3981 23 6 1.0482 1.2036 -8.5605 24 6 2.4009 1.4835 -8.4977 25 6 3.0163 1.6443 -7.2719 26 6 2.2851 1.5257 -6.1015 27 6 2.9933 1.7029 -4.7824 28 1 -0.3634 0.5645 -0.8586 29 1 -0.3633 -1.0260 -0.0596 30 1 -0.3632 0.4613 0.9183 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.5784 0.3813 3.5704 34 1 0.7289 1.8049 -1.5454 35 1 3.3536 3.8860 -2.3188 36 1 4.2451 2.7986 -1.2273 37 1 4.5014 2.7008 -2.9862 38 1 1.2721 -0.0707 -3.7697 39 1 0.1433 1.0556 -2.9729 40 1 -0.7424 0.8683 -7.4484 41 1 0.5664 1.0773 -9.5188 42 1 2.9760 1.5767 -9.4071 43 1 4.0729 1.8633 -7.2256 44 1 3.6824 2.5446 -4.8508 45 1 3.5504 0.7964 -4.5460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893606836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = -26.341821 kcal Electronic energy + Delta-G solvation = -23624.850671 eV Core-core repulsion = 20413.697017 eV Total energy + Delta-G solvation = -3211.153655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77768 -37.99013 -37.03016 -34.89625 -32.62246 -31.27910 -30.39250 -29.74263 -28.38016 -26.40797 -25.25152 -23.89860 -23.23638 -22.54539 -20.95200 -19.59609 -19.07477 -17.76932 -16.74671 -16.04953 -15.96771 -15.13478 -14.96428 -14.74454 -14.54746 -13.91326 -13.79502 -13.48166 -13.30436 -13.14886 -12.72249 -12.58685 -12.56521 -12.25926 -11.86599 -11.59105 -11.44897 -11.23519 -11.11874 -11.00693 -10.85349 -10.64277 -10.55037 -10.43164 -10.10535 -9.92493 -9.74131 -9.56886 -8.96151 -8.86533 -8.35306 -8.17838 -7.26220 -5.98539 -3.99806 1.23300 1.36380 3.30823 3.31841 3.39380 3.44399 3.68722 4.42053 4.58545 4.66307 4.69731 4.86654 4.97051 5.16021 5.18566 5.25663 5.33489 5.38659 5.42739 5.56272 5.68134 5.75167 5.79653 5.89058 5.97430 6.03841 6.22637 6.23841 6.29121 6.31112 6.35191 6.40684 6.44442 6.51777 6.55258 6.71490 6.79381 6.84634 7.24277 7.26356 7.45440 7.47055 7.67939 7.89190 8.27292 8.51209 8.60410 9.06547 9.64248 11.08555 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033302 B = 0.003576 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.581857 B = 7828.440629 C = 8201.944226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.093 3.907 15 H 0.038 0.962 16 C -0.135 4.135 17 C -0.125 4.125 18 H 0.090 0.910 19 C 0.062 3.938 20 O -0.314 6.314 21 C 0.135 3.865 22 C -0.153 4.153 23 C -0.093 4.093 24 C -0.158 4.158 25 C -0.086 4.086 26 C -0.155 4.155 27 C -0.072 4.072 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.324 0.676 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -0.400 -18.791 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.017 4.017 15 H 0.056 0.944 16 C -0.193 4.193 17 C -0.144 4.144 18 H 0.109 0.891 19 C -0.013 4.013 20 O -0.228 6.228 21 C 0.089 3.911 22 C -0.171 4.171 23 C -0.111 4.111 24 C -0.176 4.176 25 C -0.104 4.104 26 C -0.156 4.156 27 C -0.109 4.109 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.103 0.897 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.427 0.119 -18.419 18.424 hybrid contribution -0.306 -0.588 0.773 1.018 sum 0.121 -0.470 -17.646 17.653 Atomic orbital electron populations 1.21584 0.97709 0.97935 1.01322 1.22127 0.94932 1.01253 1.00281 1.19239 0.96001 0.88401 0.85564 0.94761 1.21111 1.30399 1.11442 0.89612 0.91980 1.24907 0.95564 0.95175 0.98747 1.69881 1.39038 1.24025 1.20716 0.86537 0.78935 0.79906 0.82616 1.19755 1.21275 1.21237 1.60974 1.03404 1.63437 1.03666 1.21365 0.94037 0.97434 0.88911 0.94439 1.21782 0.96956 0.99302 1.01273 1.22012 0.95981 1.00431 0.95939 0.89143 1.23194 0.96016 0.98491 0.83569 1.86002 1.35449 1.87125 1.14225 1.18795 0.89736 0.95677 0.86863 1.20605 1.00816 1.05768 0.89948 1.20882 0.94099 0.98653 0.97429 1.20978 0.95080 1.04003 0.97538 1.20912 0.99532 0.98505 0.91451 1.19961 0.93365 1.05763 0.96506 1.20579 0.97495 1.02770 0.90101 0.95274 0.95782 0.91534 0.88796 0.97216 0.93202 0.85483 0.92434 0.92072 0.93686 0.91899 0.86977 0.85411 0.85709 0.86133 0.85940 0.89669 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.39 37.16 0.35 -2.29 16 2 C -0.15 -3.30 5.50 -26.73 -0.15 -3.44 16 3 C 0.22 5.10 2.13 -68.86 -0.15 4.95 16 4 H 0.03 0.90 7.13 -51.93 -0.37 0.53 16 5 C -0.49 -12.86 7.42 -34.44 -0.26 -13.11 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.51 5.27 -17.82 -0.09 1.42 16 8 N -0.90 -24.87 11.37 55.43 0.63 -24.24 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.68 -13.57 6.05 -100.95 -0.61 -14.18 16 14 C 0.09 1.55 2.00 -67.71 -0.14 1.41 16 15 H 0.04 0.66 7.21 -51.93 -0.37 0.29 16 16 C -0.14 -2.15 9.08 37.16 0.34 -1.82 16 17 C -0.12 -1.77 2.12 -90.37 -0.19 -1.97 16 18 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.06 0.90 6.17 37.37 0.23 1.13 16 20 O -0.31 -4.69 10.27 -19.26 -0.20 -4.89 16 21 C 0.13 1.86 6.47 -39.20 -0.25 1.61 16 22 C -0.15 -1.82 9.94 -39.34 -0.39 -2.21 16 23 C -0.09 -0.93 10.04 -39.66 -0.40 -1.33 16 24 C -0.16 -1.56 10.04 -39.61 -0.40 -1.96 16 25 C -0.09 -0.94 9.67 -39.53 -0.38 -1.32 16 26 C -0.16 -1.98 5.75 -104.44 -0.60 -2.58 16 27 C -0.07 -0.89 4.48 -27.81 -0.12 -1.02 16 28 H 0.03 0.54 5.83 -51.93 -0.30 0.23 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.51 7.19 -51.93 -0.37 1.14 16 31 H 0.09 2.41 6.22 -51.93 -0.32 2.08 16 32 H 0.01 0.19 7.50 -51.93 -0.39 -0.20 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.32 6.15 4.00 -39.29 -0.16 6.00 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.10 7.46 -51.93 -0.39 0.72 16 37 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.65 5.65 -51.93 -0.29 1.36 16 40 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.08 0.96 7.14 -51.93 -0.37 0.59 16 45 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -27.87 345.12 -9.64 -37.51 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.04 Total: 7.01 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.60 Total: -22.52 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.02 Total: -38.42 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.20 Total: -4.89 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.87 -9.64 -37.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.167 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds