Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47056 * 2 1 4 4 H 1.08997 * 109.47416 * 175.12956 * 3 2 1 5 5 C 1.50702 * 109.47150 * 55.12812 * 3 2 1 6 6 H 1.08002 * 119.99839 * 240.00085 * 5 3 2 7 7 C 1.37871 * 119.99688 * 60.00076 * 5 3 2 8 8 N 1.31512 * 120.00555 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99809 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47289 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47389 * 119.99693 * 9 7 5 12 12 H 1.48501 * 109.47564 * 239.99991 * 9 7 5 13 13 N 1.46907 * 109.47196 * 295.13120 * 3 2 1 14 14 C 1.46902 * 110.99659 * 273.44860 * 13 3 2 15 15 H 1.08996 * 109.47104 * 34.79302 * 14 13 3 16 16 C 1.52996 * 109.47073 * 274.79344 * 14 13 3 17 17 C 1.53003 * 109.46936 * 154.79636 * 14 13 3 18 18 H 1.08996 * 109.69101 * 59.99918 * 17 14 13 19 19 C 1.53410 * 109.69295 * 299.44223 * 17 14 13 20 20 O 1.42816 * 108.37443 * 175.63727 * 19 17 14 21 21 C 1.35846 * 117.88200 * 49.16641 * 20 19 17 22 22 C 1.39143 * 118.49647 * 162.99042 * 21 20 19 23 23 C 1.37969 * 120.21361 * 179.58740 * 22 21 20 24 24 C 1.38284 * 119.95838 * 359.97438 * 23 22 21 25 25 C 1.38108 * 119.98524 * 0.07401 * 24 23 22 26 26 C 1.38369 * 121.80283 * 342.71871 * 21 20 19 27 27 C 1.50769 * 121.40808 * 0.54903 * 26 21 20 28 28 H 1.08993 * 109.47601 * 56.67611 * 1 2 3 29 29 H 1.09003 * 109.46949 * 176.67616 * 1 2 3 30 30 H 1.09002 * 109.46464 * 296.67356 * 1 2 3 31 31 H 1.08993 * 109.47276 * 120.00336 * 2 1 3 32 32 H 1.08997 * 109.46776 * 240.00077 * 2 1 3 33 33 H 0.96994 * 120.00319 * 180.02562 * 8 7 5 34 34 H 1.00901 * 111.00133 * 37.40193 * 13 3 2 35 35 H 1.09004 * 109.47249 * 300.00229 * 16 14 13 36 36 H 1.09005 * 109.47296 * 59.99858 * 16 14 13 37 37 H 1.08992 * 109.47390 * 180.02562 * 16 14 13 38 38 H 1.08996 * 109.68449 * 295.31146 * 19 17 14 39 39 H 1.08998 * 109.67881 * 55.87701 * 19 17 14 40 40 H 1.08004 * 119.89504 * 359.57408 * 22 21 20 41 41 H 1.07998 * 120.02185 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.00928 * 180.10169 * 24 23 22 43 43 H 1.07996 * 119.84132 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.43920 * 222.11444 * 27 26 21 45 45 H 1.08999 * 109.39341 * 102.22326 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1265 1.4438 0.0872 5 6 1.4416 2.1868 1.1657 6 1 0.8316 3.0611 0.9923 7 6 1.6728 1.7518 2.4534 8 7 2.4161 0.6875 2.6645 9 14 0.9317 2.6749 3.8983 10 1 0.1428 3.8287 3.3966 11 1 0.0432 1.7643 4.6643 12 1 2.0190 3.1652 4.7829 13 7 1.6487 2.1002 -1.2539 14 6 2.6401 1.8533 -2.3095 15 1 3.0524 0.8511 -2.1934 16 6 3.7660 2.8836 -2.2027 17 6 1.9676 1.9728 -3.6787 18 1 1.5539 2.9741 -3.7985 19 6 0.8465 0.9324 -3.7965 20 8 0.1730 1.1351 -5.0395 21 6 0.9306 1.2492 -6.1613 22 6 0.3141 1.0867 -7.3981 23 6 1.0482 1.2036 -8.5605 24 6 2.4009 1.4835 -8.4977 25 6 3.0163 1.6443 -7.2719 26 6 2.2851 1.5257 -6.1015 27 6 2.9933 1.7029 -4.7824 28 1 -0.3634 0.5645 -0.8586 29 1 -0.3633 -1.0260 -0.0596 30 1 -0.3632 0.4613 0.9183 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.5784 0.3813 3.5704 34 1 0.7289 1.8049 -1.5454 35 1 3.3536 3.8860 -2.3188 36 1 4.2451 2.7986 -1.2273 37 1 4.5014 2.7008 -2.9862 38 1 1.2721 -0.0707 -3.7697 39 1 0.1433 1.0556 -2.9729 40 1 -0.7424 0.8683 -7.4484 41 1 0.5664 1.0773 -9.5188 42 1 2.9760 1.5767 -9.4071 43 1 4.0729 1.8633 -7.2256 44 1 3.6824 2.5446 -4.8508 45 1 3.5504 0.7964 -4.5460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893606836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = -41.042949 kcal Electronic energy + Delta-G solvation = -23625.488160 eV Core-core repulsion = 20413.697017 eV Total energy + Delta-G solvation = -3211.791143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78128 -39.24855 -38.19707 -36.38708 -34.12504 -32.90957 -31.30503 -30.96541 -29.78249 -28.14417 -26.47772 -25.31682 -24.75524 -23.43422 -22.22520 -20.91057 -20.65035 -18.71308 -18.26457 -17.50495 -17.13114 -16.70063 -16.34094 -16.09189 -15.48578 -15.35956 -14.87230 -14.74401 -14.61726 -14.27670 -14.25668 -14.10960 -13.84212 -13.62368 -13.26875 -12.90584 -12.78978 -12.64562 -12.51014 -12.38367 -12.35932 -12.13941 -12.00834 -11.84600 -11.58386 -11.49925 -11.39978 -11.11798 -10.89946 -10.41651 -9.70433 -9.09631 -8.92349 -8.04633 -6.12171 0.39870 0.50055 1.40876 1.44402 1.54972 2.31131 2.46053 2.83595 3.24540 3.42591 3.57159 3.66944 3.84697 3.91585 4.11936 4.20204 4.29928 4.43568 4.44966 4.51018 4.52787 4.57590 4.61268 4.62968 4.71938 4.75536 4.82582 4.91272 5.03076 5.05002 5.08311 5.14652 5.21371 5.38834 5.42415 5.44359 5.45529 5.56578 5.62503 5.68007 5.75730 5.88358 5.91401 6.35176 6.48339 6.70973 6.88058 7.01036 7.55810 9.00803 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033302 B = 0.003576 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.581857 B = 7828.440629 C = 8201.944226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.224 3.776 4 H 0.001 0.999 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.686 5.686 14 C 0.095 3.905 15 H 0.029 0.971 16 C -0.130 4.130 17 C -0.112 4.112 18 H 0.081 0.919 19 C 0.065 3.935 20 O -0.329 6.329 21 C 0.101 3.899 22 C -0.166 4.166 23 C -0.090 4.090 24 C -0.154 4.154 25 C -0.091 4.091 26 C -0.169 4.169 27 C -0.067 4.067 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.258 0.742 34 H 0.330 0.670 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.099 0.901 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -0.139 -21.192 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.116 3.884 4 H 0.019 0.981 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.320 5.320 14 C -0.015 4.015 15 H 0.047 0.953 16 C -0.188 4.188 17 C -0.131 4.131 18 H 0.099 0.901 19 C -0.011 4.011 20 O -0.243 6.243 21 C 0.056 3.944 22 C -0.184 4.184 23 C -0.108 4.108 24 C -0.172 4.172 25 C -0.109 4.109 26 C -0.170 4.170 27 C -0.104 4.104 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.117 0.883 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.506 0.386 -20.839 20.848 hybrid contribution -0.306 -0.665 1.385 1.566 sum 0.200 -0.279 -19.454 19.457 Atomic orbital electron populations 1.21476 0.96085 0.99347 1.00828 1.21964 0.96314 1.00174 0.99430 1.18938 0.93722 0.89136 0.86632 0.98084 1.21331 1.30148 1.11222 0.90902 0.93142 1.25550 0.95995 0.95892 1.00959 1.70004 1.39982 1.25072 1.21036 0.85660 0.78183 0.78856 0.79842 1.19499 1.20865 1.21137 1.60851 1.04512 1.63100 1.03532 1.21390 0.93610 0.97183 0.89284 0.95259 1.21746 0.97238 0.98999 1.00840 1.21826 0.96348 0.99925 0.94963 0.90054 1.23084 0.95798 0.98479 0.83697 1.85968 1.36060 1.87737 1.14573 1.19154 0.90561 0.97740 0.86929 1.20866 1.01475 1.06013 0.90071 1.21273 0.94349 0.97262 0.97931 1.21396 0.95229 1.02230 0.98325 1.21222 1.00584 0.97942 0.91166 1.20066 0.93185 1.06572 0.97186 1.20542 0.96990 1.03492 0.89390 0.93393 0.93704 0.94027 0.91977 0.95594 0.93292 0.84874 0.92531 0.94868 0.90429 0.91873 0.87762 0.84901 0.82801 0.83172 0.83831 0.88278 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.39 71.98 0.68 -4.23 16 2 C -0.14 -6.36 5.50 30.59 0.17 -6.19 16 3 C 0.22 10.88 2.13 44.17 0.09 10.98 16 4 H 0.00 0.07 7.13 -2.39 -0.02 0.05 16 5 C -0.50 -26.83 7.42 25.60 0.19 -26.64 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.77 5.27 84.65 0.45 1.21 16 8 N -0.92 -52.21 11.37 21.44 0.24 -51.96 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.69 -27.68 6.05 -473.31 -2.86 -30.54 16 14 C 0.10 3.17 2.00 44.91 0.09 3.26 16 15 H 0.03 1.04 7.21 -2.39 -0.02 1.02 16 16 C -0.13 -4.11 9.08 71.98 0.65 -3.46 16 17 C -0.11 -3.10 2.12 -10.63 -0.02 -3.13 16 18 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 19 C 0.06 1.84 6.17 72.12 0.44 2.29 16 20 O -0.33 -9.76 10.27 -91.82 -0.94 -10.70 16 21 C 0.10 2.69 6.47 22.52 0.15 2.83 16 22 C -0.17 -3.70 9.94 22.42 0.22 -3.48 16 23 C -0.09 -1.54 10.04 22.22 0.22 -1.32 16 24 C -0.15 -2.48 10.04 22.25 0.22 -2.26 16 25 C -0.09 -1.72 9.67 22.30 0.22 -1.50 16 26 C -0.17 -4.02 5.75 -19.75 -0.11 -4.13 16 27 C -0.07 -1.55 4.48 29.89 0.13 -1.41 16 28 H 0.05 1.75 5.83 -2.39 -0.01 1.74 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.89 7.19 -2.39 -0.02 1.88 16 31 H 0.06 3.26 6.22 -2.39 -0.01 3.25 16 32 H 0.03 1.07 7.50 -2.39 -0.02 1.05 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.27 16 34 H 0.33 12.55 4.00 -89.69 -0.36 12.19 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.21 7.46 -2.38 -0.02 1.19 16 37 H 0.08 1.90 6.75 -2.39 -0.02 1.89 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 3.07 5.65 -2.39 -0.01 3.05 16 40 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.10 1.98 7.14 -2.39 -0.02 1.97 16 45 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 Total: -1.00 -61.09 345.12 2.87 -58.22 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.62 Total: 26.26 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.79 Total: -37.17 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -2.62 Total: -82.51 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.94 Total: -10.70 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -61.09 2.87 -58.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.179 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds