Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 89.99942 * 9 7 5 11 11 H 1.48494 * 109.46946 * 209.99639 * 9 7 5 12 12 H 1.48502 * 109.47167 * 330.00099 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47183 * 180.02562 * 15 14 13 17 17 C 1.38293 * 120.11528 * 269.72543 * 16 15 14 18 18 C 1.37931 * 120.35216 * 179.97438 * 17 16 15 19 19 C 1.39290 * 120.23663 * 0.54853 * 18 17 16 20 20 C 1.38885 * 118.87518 * 359.41409 * 19 18 17 21 21 C 1.37733 * 120.78976 * 0.41760 * 20 19 18 22 22 C 1.51647 * 107.03301 * 180.68209 * 20 19 18 23 23 C 1.54704 * 101.92560 * 15.46903 * 22 20 19 24 24 H 1.09003 * 110.74497 * 93.01884 * 23 22 20 25 25 C 1.52997 * 110.75053 * 216.18647 * 23 22 20 26 26 O 1.36135 * 129.88205 * 179.09467 * 19 18 17 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 31 31 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 32 32 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 34 34 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 35 35 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 36 36 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 37 37 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 38 38 H 1.08004 * 119.82165 * 0.17232 * 17 16 15 39 39 H 1.07993 * 119.88324 * 180.32160 * 18 17 16 40 40 H 1.07999 * 120.01579 * 179.77217 * 21 20 19 41 41 H 1.08995 * 110.93987 * 133.63115 * 22 20 19 42 42 H 1.09000 * 110.93655 * 257.27804 * 22 20 19 43 43 H 1.09005 * 109.46942 * 60.00451 * 25 23 22 44 44 H 1.09002 * 109.46815 * 179.97438 * 25 23 22 45 45 H 1.08991 * 109.47462 * 300.00001 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 2.5630 1.5413 -5.5830 11 1 1.3104 -0.3724 -6.3887 12 1 0.2266 1.2833 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 1.7087 0.1788 4.8709 17 6 2.5410 1.1648 5.3683 18 6 2.1640 1.9051 6.4694 19 6 0.9454 1.6577 7.0971 20 6 0.1178 0.6654 6.5877 21 6 0.4947 -0.0702 5.4860 22 6 -1.1265 0.6368 7.4541 23 6 -1.0216 1.9831 8.2088 24 1 -1.5681 2.7650 7.6814 25 6 -1.5327 1.8413 9.6439 26 8 0.3912 2.2486 8.1912 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2056 31 1 1.6053 -1.7199 -1.2951 32 1 2.9220 -1.8430 -4.7318 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2057 35 1 0.6529 0.1794 2.4752 36 1 1.6920 -1.6244 3.7301 37 1 3.2127 -0.7037 3.6400 38 1 3.4898 1.3585 4.8901 39 1 2.8175 2.6768 6.8483 40 1 -0.1570 -0.8413 5.1025 41 1 -2.0272 0.6029 6.8411 42 1 -1.0984 -0.2029 8.1485 43 1 -0.9362 1.0958 10.1700 44 1 -1.4490 2.8000 10.1558 45 1 -2.5762 1.5270 9.6287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896829912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -30.478538 kcal Electronic energy + Delta-G solvation = -21965.853524 eV Core-core repulsion = 18754.520488 eV Total energy + Delta-G solvation = -3211.333036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34761 -38.32131 -36.64143 -34.00736 -33.43272 -32.15126 -31.24872 -30.19960 -27.25150 -26.78108 -25.86945 -24.23515 -22.37242 -22.00997 -21.98324 -20.98601 -18.95374 -17.71965 -17.05371 -16.47327 -15.97911 -15.35022 -15.23235 -14.71985 -14.38532 -14.21832 -13.90850 -13.68362 -13.38488 -13.19378 -13.11916 -12.96051 -12.66409 -12.44576 -12.18364 -12.12228 -11.70447 -11.67749 -11.42247 -11.24439 -11.00178 -10.88187 -10.81674 -10.70909 -10.31997 -10.18204 -9.70492 -9.15129 -9.01864 -8.95376 -8.31485 -8.27599 -8.04312 -5.96222 -3.97190 1.16555 1.22087 2.96312 3.34244 3.40401 3.43625 3.52387 4.12493 4.18539 4.47304 4.53929 4.64640 4.68624 4.81068 4.86137 4.98030 5.10278 5.20899 5.28248 5.31925 5.39550 5.47171 5.51353 5.56514 5.64732 5.69800 5.79986 5.82423 5.96102 6.07185 6.13504 6.23281 6.27425 6.46296 6.48989 6.54444 6.57687 6.95220 7.03982 7.12279 7.18925 7.37337 7.66004 7.71820 7.87872 8.04175 8.48141 9.09155 9.66054 11.15246 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.002350 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.471317 B =11912.437833 C =12159.844524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.100 3.900 16 C -0.102 4.102 17 C -0.062 4.062 18 C -0.139 4.139 19 C 0.101 3.899 20 C -0.177 4.177 21 C -0.065 4.065 22 C -0.105 4.105 23 C 0.076 3.924 24 H 0.086 0.914 25 C -0.149 4.149 26 O -0.305 6.305 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.339 0.661 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 3.794 26.091 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.317 5.317 15 C -0.029 4.029 16 C -0.103 4.103 17 C -0.081 4.081 18 C -0.157 4.157 19 C 0.056 3.944 20 C -0.178 4.178 21 C -0.083 4.083 22 C -0.142 4.142 23 C 0.020 3.980 24 H 0.104 0.896 25 C -0.206 4.206 26 O -0.220 6.220 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.946 4.221 26.099 27.098 hybrid contribution -0.962 -0.386 -0.962 1.414 sum -6.908 3.836 25.137 26.350 Atomic orbital electron populations 1.21744 0.96741 1.00384 1.00272 1.21221 0.94835 1.00128 0.94108 0.91612 1.19113 0.96148 0.95356 0.90361 1.21240 1.34582 1.08236 0.90981 0.92570 1.25030 0.95396 0.95096 0.99112 1.69969 1.39183 1.21169 1.23352 0.86624 0.78924 0.79796 0.82832 1.20720 1.21352 1.19933 1.22169 1.00429 0.94426 0.89461 1.60637 1.19762 1.50390 1.00925 1.20818 1.00871 0.93808 0.87369 1.19737 0.94477 0.98589 0.97486 1.20799 0.99665 0.93609 0.93996 1.20264 0.95497 1.02836 0.97136 1.19530 0.94853 0.92451 0.87613 1.20671 0.98184 0.99563 0.99393 1.20196 0.95821 0.98571 0.93751 1.21845 0.96722 0.98026 0.97630 1.23361 0.80253 0.96454 0.97919 0.89625 1.21878 1.01434 1.03337 0.93966 1.86823 1.21966 1.72551 1.40640 0.95000 0.91859 0.94057 0.96639 0.96758 0.93122 0.95805 0.91367 0.84265 0.94739 0.90177 0.84827 0.85527 0.86070 0.89159 0.89265 0.91440 0.91340 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 14 N -0.69 -10.14 6.49 -115.05 -0.75 -10.89 16 15 C 0.10 1.25 5.82 -4.97 -0.03 1.22 16 16 C -0.10 -1.21 5.40 -104.56 -0.56 -1.78 16 17 C -0.06 -0.71 9.68 -39.67 -0.38 -1.10 16 18 C -0.14 -1.58 10.06 -39.30 -0.40 -1.97 16 19 C 0.10 1.20 7.04 -38.95 -0.27 0.92 16 20 C -0.18 -1.95 6.27 -104.10 -0.65 -2.60 16 21 C -0.06 -0.72 9.70 -39.72 -0.39 -1.11 16 22 C -0.11 -0.85 6.64 -26.52 -0.18 -1.02 16 23 C 0.08 0.61 4.25 -25.84 -0.11 0.50 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 25 C -0.15 -0.83 9.59 37.16 0.36 -0.48 16 26 O -0.31 -3.47 10.82 -20.17 -0.22 -3.69 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.92 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.34 4.86 6.98 -39.29 -0.27 4.59 16 36 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 37 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -31.03 364.48 -10.46 -41.49 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.66 Total: 0.22 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -3.05 Total: -23.09 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.01 Total: -37.20 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.22 Total: -3.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.03 -10.46 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.014 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds