Wall clock time and date at job start Tue Mar 31 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47735 * 89.99581 * 9 7 5 11 11 H 1.48498 * 109.46856 * 210.00092 * 9 7 5 12 12 H 1.48506 * 109.46711 * 329.99483 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 C 1.38288 * 120.11880 * 269.72650 * 16 15 14 18 18 C 1.37932 * 120.34857 * 179.53432 * 17 16 15 19 19 C 1.39276 * 120.23985 * 0.55168 * 18 17 16 20 20 C 1.38885 * 118.88193 * 0.09812 * 19 18 17 21 21 C 1.37744 * 120.78172 * 359.43588 * 20 19 18 22 22 C 1.51643 * 107.04675 * 179.02832 * 20 19 18 23 23 C 1.54701 * 101.94460 * 344.86296 * 22 20 19 24 24 H 1.08998 * 110.90671 * 266.83121 * 23 22 20 25 25 C 1.53006 * 110.75321 * 143.54752 * 23 22 20 26 26 O 1.36136 * 129.89919 * 180.65958 * 19 18 17 27 27 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 29 29 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 31 31 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 32 32 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 34 34 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 35 35 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 36 36 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 37 37 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 38 38 H 1.08000 * 119.82246 * 359.78867 * 17 16 15 39 39 H 1.08007 * 119.87500 * 180.26338 * 18 17 16 40 40 H 1.07994 * 120.01395 * 180.36028 * 21 20 19 41 41 H 1.09007 * 110.93044 * 103.02338 * 22 20 19 42 42 H 1.08994 * 110.93507 * 226.69851 * 22 20 19 43 43 H 1.08995 * 109.46933 * 305.18605 * 25 23 22 44 44 H 1.08996 * 109.47086 * 65.18770 * 25 23 22 45 45 H 1.08997 * 109.46828 * 185.18898 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.5648 1.5414 -5.5825 11 1 1.3109 -0.3712 -6.3888 12 1 0.2281 1.2850 -4.9869 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7086 0.1787 4.8709 17 6 2.5408 1.1648 5.3683 18 6 2.1597 1.9111 6.4639 19 6 0.9372 1.6698 7.0860 20 6 0.1160 0.6678 6.5856 21 6 0.4943 -0.0699 5.4856 22 6 -1.1164 0.6209 7.4679 23 6 -0.6589 1.4364 8.7004 24 1 -0.2499 0.7818 9.4699 25 6 -1.8145 2.2695 9.2586 26 8 0.3658 2.2861 8.1570 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7199 -1.2950 32 1 2.9226 -1.8425 -4.7317 33 1 3.1262 -0.7995 1.2056 34 1 1.6052 -1.7198 1.2953 35 1 1.9882 0.9873 2.3966 36 1 1.6919 -1.6245 3.7301 37 1 3.2126 -0.7037 3.6401 38 1 3.4924 1.3543 4.8939 39 1 2.8137 2.6823 6.8434 40 1 -0.1565 -0.8423 5.1033 41 1 -1.9647 1.0987 6.9778 42 1 -1.3567 -0.4049 7.7470 43 1 -2.2287 2.8930 8.4663 44 1 -2.5896 1.6055 9.6410 45 1 -1.4484 2.9036 10.0660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896829913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:52 Heat of formation + Delta-G solvation = -30.711190 kcal Electronic energy + Delta-G solvation = -21955.082315 eV Core-core repulsion = 18743.739190 eV Total energy + Delta-G solvation = -3211.343125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34238 -38.31280 -36.56175 -34.02369 -33.42262 -32.14014 -31.23163 -30.23795 -27.22466 -26.73310 -25.78594 -24.10172 -22.34155 -22.16399 -21.96734 -20.93639 -19.06127 -17.72435 -16.98859 -16.34978 -15.92128 -15.70800 -14.84101 -14.59767 -14.38524 -14.13355 -14.05424 -13.80231 -13.38089 -13.31422 -13.10828 -12.80392 -12.70287 -12.30723 -12.19652 -12.05101 -11.71081 -11.51919 -11.33848 -11.29203 -10.99081 -10.85452 -10.80740 -10.71223 -10.26887 -10.20581 -9.67891 -9.14166 -9.00590 -8.93921 -8.31247 -8.26926 -8.02601 -5.95947 -3.96876 1.14276 1.24644 2.97373 3.34248 3.40494 3.44101 3.51518 4.14517 4.19226 4.47885 4.55359 4.61660 4.70754 4.80128 4.91713 4.96186 5.11088 5.23057 5.28891 5.30303 5.39852 5.48678 5.51865 5.57065 5.65357 5.69081 5.78379 5.89583 5.98300 6.13564 6.18316 6.25147 6.43248 6.46518 6.53134 6.57537 6.71785 7.02330 7.04828 7.21083 7.22248 7.37580 7.65997 7.72073 7.87614 8.04452 8.48655 9.09503 9.66380 11.15575 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.002351 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.054256 B =11904.998970 C =12162.899452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.683 5.683 15 C 0.101 3.899 16 C -0.102 4.102 17 C -0.080 4.080 18 C -0.138 4.138 19 C 0.100 3.900 20 C -0.177 4.177 21 C -0.047 4.047 22 C -0.105 4.105 23 C 0.076 3.924 24 H 0.085 0.915 25 C -0.150 4.150 26 O -0.305 6.305 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.338 0.662 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 3.910 26.668 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.313 5.313 15 C -0.028 4.028 16 C -0.102 4.102 17 C -0.098 4.098 18 C -0.157 4.157 19 C 0.055 3.945 20 C -0.178 4.178 21 C -0.066 4.066 22 C -0.142 4.142 23 C 0.020 3.980 24 H 0.103 0.897 25 C -0.207 4.207 26 O -0.220 6.220 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.607 3.708 26.671 27.505 hybrid contribution 0.701 0.522 -1.011 1.336 sum -4.907 4.231 25.660 26.465 Atomic orbital electron populations 1.21585 0.95739 1.00521 1.00145 1.21195 0.96006 0.98917 0.93988 0.92845 1.19128 0.95900 0.95581 0.90448 1.21243 1.34516 1.08248 0.90984 0.92572 1.25026 0.95399 0.95103 0.99108 1.69965 1.39179 1.21215 1.23347 0.86626 0.78923 0.79798 0.82848 1.20777 1.21322 1.19892 1.22180 0.97215 0.97740 0.89384 1.60602 1.63975 1.05800 1.00973 1.20805 0.97389 0.97119 0.87520 1.19728 0.94868 0.98249 0.97393 1.20799 0.99577 0.94501 0.94951 1.20185 0.93962 1.03121 0.98444 1.19518 0.93296 0.92888 0.88787 1.20734 0.96686 1.00731 0.99622 1.20184 0.95382 0.98220 0.92812 1.21851 0.96558 1.01811 0.93998 1.23368 0.87886 0.91156 0.95559 0.89740 1.21887 0.96324 1.00534 1.01942 1.86837 1.50254 1.41982 1.42918 0.93947 0.92810 0.94200 0.96935 0.96549 0.93126 0.95702 0.91502 0.84411 0.90401 0.94584 0.85310 0.85624 0.85609 0.89057 0.89197 0.91370 0.90299 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.15 0.33 -2.09 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.08 5.07 -3.82 -0.02 1.07 16 14 N -0.68 -9.93 5.94 -115.05 -0.68 -10.62 16 15 C 0.10 1.23 5.82 -4.97 -0.03 1.20 16 16 C -0.10 -1.19 5.40 -104.56 -0.56 -1.75 16 17 C -0.08 -0.87 9.68 -39.67 -0.38 -1.25 16 18 C -0.14 -1.54 10.06 -39.31 -0.40 -1.94 16 19 C 0.10 1.19 7.03 -38.96 -0.27 0.92 16 20 C -0.18 -1.97 6.27 -104.10 -0.65 -2.62 16 21 C -0.05 -0.54 9.70 -39.72 -0.39 -0.93 16 22 C -0.11 -0.86 6.65 -26.52 -0.18 -1.04 16 23 C 0.08 0.61 4.26 -25.83 -0.11 0.50 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.15 -0.86 9.60 37.16 0.36 -0.51 16 26 O -0.31 -3.48 10.81 -20.17 -0.22 -3.70 16 27 H 0.04 0.76 7.75 -51.92 -0.40 0.35 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.34 4.80 8.72 -39.29 -0.34 4.46 16 36 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -31.15 366.69 -10.48 -41.63 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.78 Total: -0.25 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.04 Total: -23.04 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.05 Total: -37.00 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.22 Total: -3.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.15 -10.48 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.920 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds