Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47735 * 89.99581 * 9 7 5 11 11 H 1.48498 * 109.46856 * 210.00092 * 9 7 5 12 12 H 1.48506 * 109.46711 * 329.99483 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 C 1.38288 * 120.11880 * 269.72650 * 16 15 14 18 18 C 1.37932 * 120.34857 * 179.53432 * 17 16 15 19 19 C 1.39276 * 120.23985 * 0.55168 * 18 17 16 20 20 C 1.38885 * 118.88193 * 0.09812 * 19 18 17 21 21 C 1.37744 * 120.78172 * 359.43588 * 20 19 18 22 22 C 1.51643 * 107.04675 * 179.02832 * 20 19 18 23 23 C 1.54701 * 101.94460 * 344.86296 * 22 20 19 24 24 H 1.08998 * 110.90671 * 266.83121 * 23 22 20 25 25 C 1.53006 * 110.75321 * 143.54752 * 23 22 20 26 26 O 1.36136 * 129.89919 * 180.65958 * 19 18 17 27 27 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 29 29 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 31 31 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 32 32 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 34 34 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 35 35 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 36 36 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 37 37 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 38 38 H 1.08000 * 119.82246 * 359.78867 * 17 16 15 39 39 H 1.08007 * 119.87500 * 180.26338 * 18 17 16 40 40 H 1.07994 * 120.01395 * 180.36028 * 21 20 19 41 41 H 1.09007 * 110.93044 * 103.02338 * 22 20 19 42 42 H 1.08994 * 110.93507 * 226.69851 * 22 20 19 43 43 H 1.08995 * 109.46933 * 305.18605 * 25 23 22 44 44 H 1.08996 * 109.47086 * 65.18770 * 25 23 22 45 45 H 1.08997 * 109.46828 * 185.18898 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.5648 1.5414 -5.5825 11 1 1.3109 -0.3712 -6.3888 12 1 0.2281 1.2850 -4.9869 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7086 0.1787 4.8709 17 6 2.5408 1.1648 5.3683 18 6 2.1597 1.9111 6.4639 19 6 0.9372 1.6698 7.0860 20 6 0.1160 0.6678 6.5856 21 6 0.4943 -0.0699 5.4856 22 6 -1.1164 0.6209 7.4679 23 6 -0.6589 1.4364 8.7004 24 1 -0.2499 0.7818 9.4699 25 6 -1.8145 2.2695 9.2586 26 8 0.3658 2.2861 8.1570 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7199 -1.2950 32 1 2.9226 -1.8425 -4.7317 33 1 3.1262 -0.7995 1.2056 34 1 1.6052 -1.7198 1.2953 35 1 1.9882 0.9873 2.3966 36 1 1.6919 -1.6245 3.7301 37 1 3.2126 -0.7037 3.6401 38 1 3.4924 1.3543 4.8939 39 1 2.8137 2.6823 6.8434 40 1 -0.1565 -0.8423 5.1033 41 1 -1.9647 1.0987 6.9778 42 1 -1.3567 -0.4049 7.7470 43 1 -2.2287 2.8930 8.4663 44 1 -2.5896 1.6055 9.6410 45 1 -1.4484 2.9036 10.0660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896829913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = -48.012130 kcal Electronic energy + Delta-G solvation = -21955.832540 eV Core-core repulsion = 18743.739190 eV Total energy + Delta-G solvation = -3212.093350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10197 -39.23643 -37.95884 -35.59744 -34.11120 -33.98045 -31.99495 -31.30309 -28.87646 -27.80477 -26.97996 -25.59412 -23.86874 -23.09437 -22.61944 -21.82793 -20.72200 -18.49159 -18.45631 -17.75426 -16.91728 -16.58409 -16.57392 -15.98084 -15.54773 -15.17152 -15.14179 -14.88637 -14.40875 -14.18307 -14.12883 -14.01882 -13.68815 -13.45291 -13.25238 -13.12623 -13.03427 -12.87873 -12.76440 -12.53258 -12.48804 -12.20413 -12.07147 -11.91018 -11.73497 -11.56811 -11.47120 -11.07622 -10.89730 -10.52356 -9.82620 -9.35165 -8.99043 -8.16603 -6.25402 0.30281 0.39367 1.40606 1.41484 1.52590 2.27187 2.42620 2.65799 3.16700 3.40782 3.48482 3.59657 3.92088 3.95421 4.05070 4.13612 4.21122 4.26452 4.34395 4.41719 4.50222 4.56340 4.66613 4.70310 4.72514 4.76897 4.91893 4.92366 4.96327 4.99224 5.04473 5.18873 5.22522 5.29279 5.30626 5.42813 5.47759 5.52158 5.57362 5.64889 5.69230 5.82911 5.90485 6.07305 6.25019 6.32979 6.49570 6.90566 7.42622 8.95322 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.002351 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.054256 B =11904.998970 C =12162.899452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.681 5.681 15 C 0.105 3.895 16 C -0.111 4.111 17 C -0.081 4.081 18 C -0.148 4.148 19 C 0.084 3.916 20 C -0.186 4.186 21 C -0.057 4.057 22 C -0.103 4.103 23 C 0.070 3.930 24 H 0.096 0.904 25 C -0.146 4.146 26 O -0.324 6.324 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.036 0.964 30 H -0.013 1.013 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.342 0.658 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 4.734 27.707 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.052 4.052 14 N -0.312 5.312 15 C -0.023 4.023 16 C -0.111 4.111 17 C -0.100 4.100 18 C -0.167 4.167 19 C 0.039 3.961 20 C -0.187 4.187 21 C -0.076 4.076 22 C -0.140 4.140 23 C 0.014 3.986 24 H 0.114 0.886 25 C -0.203 4.203 26 O -0.239 6.239 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.005 0.995 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.624 4.543 27.734 28.873 hybrid contribution 1.020 0.259 -1.252 1.635 sum -5.605 4.802 26.482 27.491 Atomic orbital electron populations 1.21476 0.94827 1.00362 1.00322 1.21009 0.96614 0.98409 0.93262 0.92921 1.19022 0.94158 0.94715 0.92670 1.21642 1.34325 1.08519 0.92113 0.92203 1.25952 0.95361 0.96125 1.02646 1.70097 1.40348 1.22879 1.24246 0.85511 0.78982 0.78380 0.78573 1.19917 1.20925 1.18835 1.21869 0.96772 0.97385 0.89152 1.60528 1.64143 1.05846 1.00724 1.20789 0.97858 0.97127 0.86575 1.19707 0.95352 0.98703 0.97380 1.20975 1.00073 0.94090 0.94848 1.20425 0.94227 1.03500 0.98546 1.19801 0.93797 0.93265 0.89244 1.21055 0.97752 1.00229 0.99642 1.20335 0.95522 0.98583 0.93122 1.21940 0.95465 1.03081 0.93494 1.23664 0.87852 0.91373 0.95671 0.88599 1.21911 0.96031 1.00696 1.01648 1.86816 1.51127 1.43082 1.42876 0.91696 0.94530 0.94519 0.99457 0.99077 0.92967 0.96049 0.91734 0.84014 0.90116 0.93792 0.83850 0.84473 0.84995 0.88644 0.87277 0.92096 0.87943 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 2 C -0.07 -3.03 2.48 -10.80 -0.03 -3.06 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.03 1.68 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.06 8.41 25.60 0.22 -29.84 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 13 C 0.08 2.60 5.07 86.30 0.44 3.04 16 14 N -0.68 -18.85 5.94 -517.92 -3.08 -21.93 16 15 C 0.10 2.42 5.82 85.55 0.50 2.91 16 16 C -0.11 -2.45 5.40 -19.83 -0.11 -2.55 16 17 C -0.08 -1.67 9.68 22.21 0.21 -1.46 16 18 C -0.15 -3.17 10.06 22.45 0.23 -2.94 16 19 C 0.08 1.92 7.03 22.67 0.16 2.08 16 20 C -0.19 -3.91 6.27 -19.53 -0.12 -4.03 16 21 C -0.06 -1.24 9.70 22.18 0.22 -1.02 16 22 C -0.10 -1.51 6.65 30.73 0.20 -1.30 16 23 C 0.07 1.00 4.26 31.18 0.13 1.13 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 C -0.15 -1.41 9.60 71.98 0.69 -0.72 16 26 O -0.32 -7.09 10.81 -95.10 -1.03 -8.12 16 27 H 0.06 2.20 7.75 -2.38 -0.02 2.19 16 28 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 31 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.34 9.16 8.72 -89.69 -0.78 8.38 16 36 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 37 H 0.04 0.96 8.09 -2.39 -0.02 0.94 16 38 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 40 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.10 1.31 7.90 -2.38 -0.02 1.29 16 42 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 44 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -66.79 366.69 2.35 -64.45 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.17 Total: 15.28 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 3.97 Total: -39.40 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.79 Total: -79.05 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.03 Total: -8.12 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.79 2.35 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.433 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds