Wall clock time and date at job start Tue Mar 31 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38290 * 120.11527 * 269.72187 * 16 15 14 18 18 C 1.37934 * 120.34865 * 179.97438 * 17 16 15 19 19 C 1.39285 * 120.24248 * 0.54823 * 18 17 16 20 20 C 1.38883 * 118.87240 * 359.41478 * 19 18 17 21 21 C 1.37742 * 120.78986 * 0.41861 * 20 19 18 22 22 C 1.51649 * 107.03908 * 180.67746 * 20 19 18 23 23 C 1.54705 * 101.91766 * 15.47639 * 22 20 19 24 24 H 1.08998 * 110.75334 * 93.01631 * 23 22 20 25 25 C 1.53007 * 110.74784 * 216.18614 * 23 22 20 26 26 O 1.36131 * 129.88901 * 179.09649 * 19 18 17 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 31 31 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 34 34 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 35 35 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 36 36 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 37 37 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 38 38 H 1.08001 * 119.82544 * 0.18051 * 17 16 15 39 39 H 1.07999 * 119.88158 * 180.32393 * 18 17 16 40 40 H 1.07999 * 120.01292 * 179.81175 * 21 20 19 41 41 H 1.08997 * 110.94081 * 133.62798 * 22 20 19 42 42 H 1.08997 * 110.94094 * 257.28019 * 22 20 19 43 43 H 1.08996 * 109.46872 * 60.00102 * 25 23 22 44 44 H 1.09001 * 109.46836 * 179.97438 * 25 23 22 45 45 H 1.08995 * 109.46652 * 299.99635 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4977 -0.0742 -5.4887 18 6 0.1110 0.6601 -6.5904 19 6 0.9431 1.6554 -7.0974 20 6 2.1565 1.9002 -6.4677 21 6 2.5392 1.1681 -5.3655 22 6 2.8278 3.0322 -7.2211 23 6 1.6540 3.6037 -8.0512 24 1 1.1681 4.4223 -7.5203 25 6 2.1375 4.0645 -9.4278 26 8 0.7691 2.4767 -8.1690 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7995 1.2057 31 1 1.6053 -1.7197 1.2953 32 1 2.9286 -2.0221 3.0617 33 1 3.1263 -0.7997 -1.2054 34 1 1.6053 -1.7200 -1.2950 35 1 0.6529 0.1791 -2.4753 36 1 3.2127 -0.7042 -3.6399 37 1 1.6921 -1.6250 -3.7299 38 1 -0.1503 -0.8481 -5.1046 39 1 -0.8388 0.4602 -7.0639 40 1 3.4870 1.3670 -4.8873 41 1 3.2184 3.7810 -6.5321 42 1 3.6171 2.6538 -7.8706 43 1 2.5681 3.2185 -9.9635 44 1 1.2954 4.4622 -9.9942 45 1 2.8931 4.8405 -9.3064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896829914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:54 Heat of formation + Delta-G solvation = -34.334738 kcal Electronic energy + Delta-G solvation = -21989.316157 eV Core-core repulsion = 18777.815903 eV Total energy + Delta-G solvation = -3211.500254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36682 -38.36899 -36.74932 -34.20136 -33.44743 -32.25497 -31.25205 -30.21513 -27.17010 -26.53561 -25.91618 -24.13606 -22.37979 -22.20558 -21.98770 -20.95635 -19.21543 -17.74365 -17.01627 -16.74441 -16.13722 -15.87675 -14.69791 -14.59373 -14.42690 -14.14570 -13.83124 -13.68095 -13.42786 -13.35584 -13.25214 -13.10475 -12.69402 -12.61168 -12.25076 -11.97922 -11.80125 -11.64260 -11.53884 -11.21465 -11.05896 -10.95467 -10.85680 -10.68050 -10.21508 -10.06215 -9.83544 -9.44154 -9.03717 -8.46873 -8.33710 -8.27948 -8.09300 -6.30606 -3.98571 1.10881 1.21353 2.94083 3.46407 3.48486 3.48634 3.66992 4.12576 4.18110 4.48803 4.56700 4.60616 4.68905 4.77446 4.86367 4.93446 5.09498 5.18922 5.25406 5.26527 5.44803 5.45693 5.48373 5.54468 5.61347 5.66271 5.70727 5.74556 5.93492 5.97337 6.09318 6.17417 6.22255 6.37722 6.42924 6.47352 6.49917 6.82484 7.00739 7.02970 7.05209 7.27154 7.44365 7.56373 7.65014 8.28833 8.52294 8.94518 9.72750 11.09783 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.002370 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.505884 B =11813.066692 C =12075.057031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 H 0.067 0.933 4 C 0.015 3.985 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.063 3.937 14 N -0.685 5.685 15 C 0.100 3.900 16 C -0.103 4.103 17 C -0.080 4.080 18 C -0.138 4.138 19 C 0.101 3.899 20 C -0.177 4.177 21 C -0.047 4.047 22 C -0.105 4.105 23 C 0.076 3.924 24 H 0.086 0.914 25 C -0.149 4.149 26 O -0.305 6.305 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.006 0.994 31 H 0.005 0.995 32 H 0.268 0.732 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.340 0.660 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 7.365 -26.128 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.317 5.317 15 C -0.028 4.028 16 C -0.104 4.104 17 C -0.098 4.098 18 C -0.157 4.157 19 C 0.056 3.944 20 C -0.178 4.178 21 C -0.066 4.066 22 C -0.143 4.143 23 C 0.020 3.980 24 H 0.104 0.896 25 C -0.206 4.206 26 O -0.220 6.220 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.216 7.781 -24.624 25.853 hybrid contribution -0.615 -0.701 -1.672 1.914 sum -1.831 7.080 -26.296 27.294 Atomic orbital electron populations 1.21733 0.96475 1.00415 1.00474 1.21081 0.95019 1.00020 0.93473 0.91503 1.19241 0.95345 0.95418 0.92280 1.22031 1.38602 1.10255 0.92271 0.93222 1.25829 0.94769 0.97170 1.01392 1.70781 1.36302 1.14701 1.33462 0.83566 0.76016 0.75170 0.75653 1.20874 1.21488 1.21527 1.22171 1.00316 0.94456 0.89613 1.60617 1.19870 1.50336 1.00878 1.20813 1.00807 0.93874 0.87354 1.19715 0.95070 0.98074 0.97507 1.20791 0.95885 0.98706 0.94468 1.20186 0.99692 0.97640 0.98188 1.19520 0.93867 0.93228 0.87775 1.20738 0.96023 1.01667 0.99343 1.20187 0.99665 0.93390 0.93323 1.21853 0.98062 0.96147 0.98190 1.23373 0.88794 0.88197 0.97632 0.89595 1.21880 1.01892 1.02037 0.94799 1.86819 1.61668 1.33464 1.40037 0.91731 0.94783 0.94108 0.97603 0.97678 0.92204 0.91498 0.95820 0.84133 0.90328 0.94582 0.85354 0.85584 0.85577 0.89024 0.89207 0.91440 0.91353 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.59 2.55 -90.62 -0.23 -1.82 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -16.90 8.41 -34.44 -0.29 -17.19 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.37 13.65 55.43 0.76 -27.62 16 9 Si 1.07 25.62 29.90 -169.99 -5.08 20.53 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.09 5.14 -3.82 -0.02 1.07 16 14 N -0.69 -10.15 6.49 -115.06 -0.75 -10.90 16 15 C 0.10 1.25 5.82 -4.98 -0.03 1.22 16 16 C -0.10 -1.22 5.40 -104.56 -0.56 -1.78 16 17 C -0.08 -0.87 9.68 -39.67 -0.38 -1.26 16 18 C -0.14 -1.54 10.06 -39.30 -0.40 -1.93 16 19 C 0.10 1.20 7.04 -38.95 -0.27 0.93 16 20 C -0.18 -1.98 6.27 -104.10 -0.65 -2.63 16 21 C -0.05 -0.55 9.70 -39.72 -0.39 -0.93 16 22 C -0.11 -0.87 6.64 -26.52 -0.18 -1.05 16 23 C 0.08 0.62 4.25 -25.83 -0.11 0.51 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.15 -0.84 9.59 37.16 0.36 -0.49 16 26 O -0.31 -3.47 10.82 -20.16 -0.22 -3.69 16 27 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 28 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 31 H 0.00 0.13 8.00 -51.93 -0.42 -0.28 16 32 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.34 4.88 6.98 -39.29 -0.27 4.61 16 36 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.65 7.93 -51.93 -0.41 0.24 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -31.82 363.17 -10.45 -42.27 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.60 Total: 0.99 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -3.03 Total: -27.07 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.01 Total: -38.51 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.22 Total: -3.69 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.82 -10.45 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.937 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds