Wall clock time and date at job start Tue Mar 31 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38290 * 120.11527 * 269.72187 * 16 15 14 18 18 C 1.37934 * 120.34865 * 179.97438 * 17 16 15 19 19 C 1.39285 * 120.24248 * 0.54823 * 18 17 16 20 20 C 1.38883 * 118.87240 * 359.41478 * 19 18 17 21 21 C 1.37742 * 120.78986 * 0.41861 * 20 19 18 22 22 C 1.51649 * 107.03908 * 180.67746 * 20 19 18 23 23 C 1.54705 * 101.91766 * 15.47639 * 22 20 19 24 24 H 1.08998 * 110.75334 * 93.01631 * 23 22 20 25 25 C 1.53007 * 110.74784 * 216.18614 * 23 22 20 26 26 O 1.36131 * 129.88901 * 179.09649 * 19 18 17 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 31 31 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 34 34 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 35 35 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 36 36 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 37 37 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 38 38 H 1.08001 * 119.82544 * 0.18051 * 17 16 15 39 39 H 1.07999 * 119.88158 * 180.32393 * 18 17 16 40 40 H 1.07999 * 120.01292 * 179.81175 * 21 20 19 41 41 H 1.08997 * 110.94081 * 133.62798 * 22 20 19 42 42 H 1.08997 * 110.94094 * 257.28019 * 22 20 19 43 43 H 1.08996 * 109.46872 * 60.00102 * 25 23 22 44 44 H 1.09001 * 109.46836 * 179.97438 * 25 23 22 45 45 H 1.08995 * 109.46652 * 299.99635 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4977 -0.0742 -5.4887 18 6 0.1110 0.6601 -6.5904 19 6 0.9431 1.6554 -7.0974 20 6 2.1565 1.9002 -6.4677 21 6 2.5392 1.1681 -5.3655 22 6 2.8278 3.0322 -7.2211 23 6 1.6540 3.6037 -8.0512 24 1 1.1681 4.4223 -7.5203 25 6 2.1375 4.0645 -9.4278 26 8 0.7691 2.4767 -8.1690 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7995 1.2057 31 1 1.6053 -1.7197 1.2953 32 1 2.9286 -2.0221 3.0617 33 1 3.1263 -0.7997 -1.2054 34 1 1.6053 -1.7200 -1.2950 35 1 0.6529 0.1791 -2.4753 36 1 3.2127 -0.7042 -3.6399 37 1 1.6921 -1.6250 -3.7299 38 1 -0.1503 -0.8481 -5.1046 39 1 -0.8388 0.4602 -7.0639 40 1 3.4870 1.3670 -4.8873 41 1 3.2184 3.7810 -6.5321 42 1 3.6171 2.6538 -7.8706 43 1 2.5681 3.2185 -9.9635 44 1 1.2954 4.4622 -9.9942 45 1 2.8931 4.8405 -9.3064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896829914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:53 Heat of formation + Delta-G solvation = -52.454516 kcal Electronic energy + Delta-G solvation = -21990.101889 eV Core-core repulsion = 18777.815903 eV Total energy + Delta-G solvation = -3212.285986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13261 -39.32458 -38.14898 -35.83470 -34.14264 -34.01809 -32.01203 -31.29183 -28.54957 -27.88433 -27.08148 -25.63864 -24.02606 -23.12200 -22.64687 -21.84496 -20.88538 -18.87944 -18.49249 -17.78626 -17.31472 -16.64870 -16.03208 -15.78343 -15.57554 -15.43965 -15.18425 -14.97279 -14.80354 -14.22373 -14.07695 -14.00372 -13.73476 -13.54736 -13.39843 -13.27582 -13.06756 -12.96746 -12.75766 -12.56750 -12.46643 -12.15034 -11.95229 -11.81312 -11.73531 -11.63784 -11.55624 -11.29148 -10.56893 -10.51283 -9.86269 -9.44251 -9.03474 -8.64464 -6.33401 0.26551 0.35662 1.52869 1.61462 1.80381 2.22592 2.58067 2.63259 3.19312 3.35922 3.43204 3.55066 3.88853 3.91057 4.01882 4.07263 4.13717 4.20027 4.23173 4.35231 4.37604 4.44142 4.62420 4.64589 4.67784 4.72089 4.73668 4.77009 4.90010 4.92714 4.96942 5.03172 5.15222 5.20638 5.24467 5.25480 5.31480 5.39336 5.48732 5.60369 5.63757 5.65588 5.98001 6.10442 6.21767 6.23307 6.43421 6.63395 7.47171 8.76143 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.002370 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.505884 B =11813.066692 C =12075.057031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.054 0.946 4 C 0.016 3.984 5 C -0.604 4.604 6 H 0.051 0.949 7 C -0.044 4.044 8 N -0.941 5.941 9 Si 1.116 2.884 10 H -0.285 1.285 11 H -0.270 1.270 12 H -0.269 1.269 13 C 0.077 3.923 14 N -0.686 5.686 15 C 0.104 3.896 16 C -0.113 4.113 17 C -0.081 4.081 18 C -0.147 4.147 19 C 0.085 3.915 20 C -0.186 4.186 21 C -0.058 4.058 22 C -0.103 4.103 23 C 0.069 3.931 24 H 0.091 0.909 25 C -0.144 4.144 26 O -0.322 6.322 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.042 0.958 30 H -0.016 1.016 31 H -0.013 1.013 32 H 0.254 0.746 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.344 0.656 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 8.684 -27.233 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.021 4.021 5 C -0.642 4.642 6 H 0.070 0.930 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.937 3.063 10 H -0.211 1.211 11 H -0.195 1.195 12 H -0.194 1.194 13 C -0.052 4.052 14 N -0.319 5.319 15 C -0.024 4.024 16 C -0.114 4.114 17 C -0.099 4.099 18 C -0.166 4.166 19 C 0.040 3.960 20 C -0.187 4.187 21 C -0.077 4.077 22 C -0.140 4.140 23 C 0.014 3.986 24 H 0.109 0.891 25 C -0.201 4.201 26 O -0.237 6.237 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.002 0.998 31 H 0.006 0.994 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.164 0.836 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.911 9.110 -25.769 27.399 hybrid contribution -0.391 -1.095 -1.421 1.836 sum -2.302 8.015 -27.190 28.440 Atomic orbital electron populations 1.21643 0.94897 1.00722 1.01099 1.20902 0.96275 0.98814 0.92863 0.92763 1.19183 0.93885 0.94828 0.94219 1.22435 1.37992 1.10379 0.93432 0.93023 1.27406 0.94139 0.97326 1.05224 1.70918 1.38238 1.15994 1.32801 0.82952 0.76950 0.74525 0.71853 1.21068 1.19518 1.19399 1.21859 0.99750 0.94326 0.89292 1.60536 1.20251 1.50264 1.00807 1.20801 1.00879 0.94300 0.86416 1.19702 0.95694 0.98440 0.97516 1.20979 0.95750 0.98914 0.94258 1.20439 1.00294 0.97503 0.98334 1.19809 0.94409 0.93659 0.88118 1.21054 0.96261 1.02236 0.99178 1.20332 0.99981 0.93654 0.93738 1.21942 0.98225 0.95545 0.98289 1.23652 0.88362 0.87448 0.99179 0.89073 1.21897 1.02500 1.02446 0.93270 1.86801 1.62630 1.34269 1.40001 0.93781 0.91431 0.93932 0.99813 0.99426 0.93670 0.92197 0.95456 0.83629 0.90279 0.93520 0.83680 0.84277 0.85189 0.87732 0.88130 0.91796 0.91088 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.77 71.98 0.63 -4.02 16 2 C -0.07 -2.86 2.55 -10.79 -0.03 -2.89 16 3 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.02 0.86 3.76 29.85 0.11 0.97 16 5 C -0.60 -34.76 8.41 25.60 0.22 -34.54 16 6 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 7 C -0.04 -2.61 5.46 84.65 0.46 -2.14 16 8 N -0.94 -59.42 13.65 21.45 0.29 -59.13 16 9 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 C 0.08 2.60 5.14 86.31 0.44 3.04 16 14 N -0.69 -19.24 6.49 -517.93 -3.36 -22.60 16 15 C 0.10 2.43 5.82 85.56 0.50 2.93 16 16 C -0.11 -2.51 5.40 -19.82 -0.11 -2.62 16 17 C -0.08 -1.63 9.68 22.21 0.21 -1.42 16 18 C -0.15 -3.09 10.06 22.45 0.23 -2.86 16 19 C 0.09 1.94 7.04 22.68 0.16 2.10 16 20 C -0.19 -3.96 6.27 -19.52 -0.12 -4.09 16 21 C -0.06 -1.30 9.70 22.18 0.22 -1.08 16 22 C -0.10 -1.54 6.64 30.73 0.20 -1.33 16 23 C 0.07 1.02 4.25 31.18 0.13 1.15 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 C -0.14 -1.35 9.59 71.98 0.69 -0.66 16 26 O -0.32 -7.00 10.82 -95.04 -1.03 -8.03 16 27 H 0.04 1.78 6.95 -2.39 -0.02 1.77 16 28 H 0.07 2.02 6.68 -2.39 -0.02 2.01 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H -0.02 -0.92 8.01 -2.39 -0.02 -0.94 16 31 H -0.01 -0.70 8.00 -2.39 -0.02 -0.72 16 32 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.34 9.11 6.98 -89.69 -0.63 8.48 16 36 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 37 H 0.05 1.00 8.09 -2.39 -0.02 0.99 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.27 7.93 -2.39 -0.02 1.25 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -68.78 363.17 2.34 -66.45 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.43 Total: 17.67 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 3.95 Total: -47.47 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -3.07 Total: -81.73 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.03 Total: -8.03 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -68.78 2.34 -66.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds