Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38288 * 120.11442 * 269.72643 * 16 15 14 18 18 C 1.37937 * 120.34761 * 179.53794 * 17 16 15 19 19 C 1.39285 * 120.23678 * 0.55314 * 18 17 16 20 20 C 1.38880 * 118.88230 * 0.09583 * 19 18 17 21 21 C 1.37744 * 120.78136 * 359.43500 * 20 19 18 22 22 C 1.51640 * 107.04917 * 179.03519 * 20 19 18 23 23 C 1.54709 * 101.94258 * 344.86028 * 22 20 19 24 24 H 1.08996 * 110.91060 * 266.83519 * 23 22 20 25 25 C 1.52994 * 110.75338 * 143.54891 * 23 22 20 26 26 O 1.36137 * 129.89680 * 180.66802 * 19 18 17 27 27 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 29 29 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 30 30 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 31 31 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 34 34 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 35 35 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 36 36 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 37 37 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 38 38 H 1.08003 * 119.82930 * 359.79213 * 17 16 15 39 39 H 1.07995 * 119.88318 * 180.26487 * 18 17 16 40 40 H 1.07995 * 120.01419 * 180.35723 * 21 20 19 41 41 H 1.08998 * 110.93834 * 103.02166 * 22 20 19 42 42 H 1.09000 * 110.93661 * 226.69707 * 22 20 19 43 43 H 1.09004 * 109.47258 * 305.19423 * 25 23 22 44 44 H 1.09005 * 109.47244 * 65.19084 * 25 23 22 45 45 H 1.09000 * 109.47134 * 185.19063 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4977 -0.0742 -5.4886 18 6 0.1069 0.6662 -6.5849 19 6 0.9351 1.6675 -7.0864 20 6 2.1550 1.9025 -6.4656 21 6 2.5390 1.1685 -5.3651 22 6 2.8382 3.0164 -7.2351 23 6 2.0131 3.0545 -8.5433 24 1 2.4703 2.4289 -9.3099 25 6 1.8549 4.4919 -9.0428 26 8 0.7446 2.5146 -8.1350 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7995 1.2057 31 1 1.6053 -1.7197 1.2953 32 1 2.9286 -2.0221 3.0617 33 1 3.1263 -0.7997 -1.2054 34 1 1.6053 -1.7200 -1.2950 35 1 1.9883 0.9871 -2.3967 36 1 3.2127 -0.7042 -3.6399 37 1 1.6921 -1.6250 -3.7299 38 1 -0.1476 -0.8522 -5.1083 39 1 -0.8424 0.4656 -7.0590 40 1 3.4878 1.3655 -4.8886 41 1 2.7630 3.9628 -6.6996 42 1 3.8796 2.7673 -7.4386 43 1 1.4257 5.1064 -8.2514 44 1 2.8309 4.8890 -9.3222 45 1 1.1956 4.5045 -9.9107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896829915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = -34.488079 kcal Electronic energy + Delta-G solvation = -21984.142247 eV Core-core repulsion = 18772.635344 eV Total energy + Delta-G solvation = -3211.506903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37911 -38.35495 -36.67667 -34.22371 -33.45848 -32.24042 -31.27620 -30.21938 -27.18997 -26.44881 -25.85036 -24.03958 -22.42881 -22.11573 -22.00943 -21.06096 -19.31984 -17.75141 -17.05847 -16.67870 -16.07450 -15.42139 -15.17942 -14.62532 -14.35566 -14.16550 -13.82228 -13.68813 -13.40190 -13.31688 -13.26774 -13.10039 -12.67623 -12.49536 -12.31170 -11.93271 -11.71736 -11.64054 -11.37187 -11.27810 -11.05606 -10.95174 -10.85862 -10.65981 -10.19797 -10.06947 -9.79742 -9.43499 -9.05144 -8.46353 -8.31095 -8.27436 -8.09039 -6.30389 -3.98259 1.13042 1.18629 2.94430 3.46513 3.48048 3.48708 3.67170 4.09193 4.15206 4.51640 4.53493 4.61541 4.65493 4.77744 4.80844 4.95084 5.07346 5.20313 5.24104 5.29027 5.44526 5.45862 5.47066 5.53541 5.58470 5.65159 5.69875 5.80116 5.92159 6.06968 6.09711 6.20282 6.33137 6.44161 6.46213 6.49896 6.61743 6.90865 7.00307 7.08807 7.14463 7.27490 7.43421 7.56703 7.63908 8.29357 8.52675 8.94837 9.73038 11.10001 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.002371 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.764311 B =11805.049425 C =12076.185261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.062 3.938 14 N -0.682 5.682 15 C 0.101 3.899 16 C -0.103 4.103 17 C -0.062 4.062 18 C -0.139 4.139 19 C 0.101 3.899 20 C -0.177 4.177 21 C -0.064 4.064 22 C -0.105 4.105 23 C 0.076 3.924 24 H 0.085 0.915 25 C -0.150 4.150 26 O -0.305 6.305 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.003 0.997 31 H 0.007 0.993 32 H 0.267 0.733 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.338 0.662 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 7.465 -26.708 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.312 5.312 15 C -0.028 4.028 16 C -0.103 4.103 17 C -0.081 4.081 18 C -0.157 4.157 19 C 0.056 3.944 20 C -0.177 4.177 21 C -0.083 4.083 22 C -0.142 4.142 23 C 0.020 3.980 24 H 0.103 0.897 25 C -0.207 4.207 26 O -0.219 6.219 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.886 7.251 -25.199 26.237 hybrid contribution 1.048 0.209 -1.624 1.944 sum 0.162 7.460 -26.823 27.842 Atomic orbital electron populations 1.21578 0.95472 1.00549 1.00346 1.21058 0.96189 0.98815 0.93352 0.92731 1.19253 0.95096 0.95643 0.92365 1.22032 1.38545 1.10268 0.92273 0.93225 1.25830 0.94775 0.97171 1.01389 1.70782 1.36345 1.14695 1.33451 0.83566 0.76079 0.75113 0.75651 1.20872 1.21544 1.21466 1.22187 0.97092 0.97785 0.89532 1.60584 1.63954 1.05769 1.00922 1.20806 0.97330 0.97167 0.87492 1.19711 0.95032 0.98132 0.97456 1.20784 0.95390 0.98469 0.93428 1.20259 1.00679 0.95519 0.99272 1.19530 0.94880 0.91293 0.88703 1.20678 0.97456 1.00270 0.99345 1.20199 0.99497 0.94256 0.94363 1.21852 1.00091 0.97861 0.94429 1.23366 0.82110 0.96128 0.96350 0.89716 1.21888 1.03086 0.93385 1.02335 1.86844 1.31174 1.56839 1.47074 0.94251 0.92677 0.93735 0.97902 0.97463 0.92215 0.95843 0.91498 0.84405 0.94728 0.90257 0.84892 0.85518 0.86057 0.89092 0.89245 0.91371 0.90302 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.56 2.48 -90.62 -0.22 -1.78 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -16.96 8.41 -34.44 -0.29 -17.25 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.44 13.65 55.43 0.76 -27.68 16 9 Si 1.07 25.69 29.90 -169.99 -5.08 20.60 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.07 5.07 -3.82 -0.02 1.05 16 14 N -0.68 -9.94 5.94 -115.06 -0.68 -10.62 16 15 C 0.10 1.23 5.82 -4.98 -0.03 1.20 16 16 C -0.10 -1.20 5.40 -104.56 -0.56 -1.76 16 17 C -0.06 -0.70 9.68 -39.67 -0.38 -1.08 16 18 C -0.14 -1.56 10.06 -39.30 -0.40 -1.95 16 19 C 0.10 1.19 7.03 -38.95 -0.27 0.92 16 20 C -0.18 -1.93 6.27 -104.10 -0.65 -2.58 16 21 C -0.06 -0.71 9.70 -39.72 -0.39 -1.10 16 22 C -0.11 -0.84 6.65 -26.52 -0.18 -1.02 16 23 C 0.08 0.60 4.26 -25.83 -0.11 0.49 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.15 -0.85 9.60 37.15 0.36 -0.49 16 26 O -0.30 -3.45 10.81 -20.18 -0.22 -3.67 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 29 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 30 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 31 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 32 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.34 4.84 8.72 -39.29 -0.34 4.50 16 36 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 37 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -31.93 365.38 -10.46 -42.39 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.72 Total: 0.44 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -3.02 Total: -26.97 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.07 Total: -38.30 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.22 Total: -3.67 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.93 -10.46 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.905 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds