Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38288 * 120.11442 * 269.72643 * 16 15 14 18 18 C 1.37937 * 120.34761 * 179.53794 * 17 16 15 19 19 C 1.39285 * 120.23678 * 0.55314 * 18 17 16 20 20 C 1.38880 * 118.88230 * 0.09583 * 19 18 17 21 21 C 1.37744 * 120.78136 * 359.43500 * 20 19 18 22 22 C 1.51640 * 107.04917 * 179.03519 * 20 19 18 23 23 C 1.54709 * 101.94258 * 344.86028 * 22 20 19 24 24 H 1.08996 * 110.91060 * 266.83519 * 23 22 20 25 25 C 1.52994 * 110.75338 * 143.54891 * 23 22 20 26 26 O 1.36137 * 129.89680 * 180.66802 * 19 18 17 27 27 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 29 29 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 30 30 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 31 31 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 34 34 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 35 35 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 36 36 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 37 37 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 38 38 H 1.08003 * 119.82930 * 359.79213 * 17 16 15 39 39 H 1.07995 * 119.88318 * 180.26487 * 18 17 16 40 40 H 1.07995 * 120.01419 * 180.35723 * 21 20 19 41 41 H 1.08998 * 110.93834 * 103.02166 * 22 20 19 42 42 H 1.09000 * 110.93661 * 226.69707 * 22 20 19 43 43 H 1.09004 * 109.47258 * 305.19423 * 25 23 22 44 44 H 1.09005 * 109.47244 * 65.19084 * 25 23 22 45 45 H 1.09000 * 109.47134 * 185.19063 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4977 -0.0742 -5.4886 18 6 0.1069 0.6662 -6.5849 19 6 0.9351 1.6675 -7.0864 20 6 2.1550 1.9025 -6.4656 21 6 2.5390 1.1685 -5.3651 22 6 2.8382 3.0164 -7.2351 23 6 2.0131 3.0545 -8.5433 24 1 2.4703 2.4289 -9.3099 25 6 1.8549 4.4919 -9.0428 26 8 0.7446 2.5146 -8.1350 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7995 1.2057 31 1 1.6053 -1.7197 1.2953 32 1 2.9286 -2.0221 3.0617 33 1 3.1263 -0.7997 -1.2054 34 1 1.6053 -1.7200 -1.2950 35 1 1.9883 0.9871 -2.3967 36 1 3.2127 -0.7042 -3.6399 37 1 1.6921 -1.6250 -3.7299 38 1 -0.1476 -0.8522 -5.1083 39 1 -0.8424 0.4656 -7.0590 40 1 3.4878 1.3655 -4.8886 41 1 2.7630 3.9628 -6.6996 42 1 3.8796 2.7673 -7.4386 43 1 1.4257 5.1064 -8.2514 44 1 2.8309 4.8890 -9.3222 45 1 1.1956 4.5045 -9.9107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896829915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = -52.491053 kcal Electronic energy + Delta-G solvation = -21984.922915 eV Core-core repulsion = 18772.635344 eV Total energy + Delta-G solvation = -3212.287570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13238 -39.28880 -38.09737 -35.84473 -34.14725 -34.02149 -32.03183 -31.28319 -28.51555 -27.86231 -27.03489 -25.56449 -24.03961 -23.02817 -22.64861 -21.97225 -20.96884 -18.85053 -18.49033 -17.83806 -16.95472 -16.43900 -16.22909 -15.92635 -15.63843 -15.56781 -15.18053 -15.04014 -14.60394 -14.16095 -14.10062 -13.86551 -13.73298 -13.57822 -13.36736 -13.25564 -13.03048 -12.92258 -12.80919 -12.50111 -12.45787 -12.11330 -11.95308 -11.87626 -11.71103 -11.63828 -11.55319 -11.30567 -10.56278 -10.51432 -9.87397 -9.41211 -9.02795 -8.64687 -6.33592 0.28533 0.34595 1.52693 1.61262 1.80215 2.24749 2.57740 2.62587 3.19091 3.31979 3.46860 3.57218 3.84481 3.89436 4.01249 4.08223 4.13759 4.22507 4.26007 4.39322 4.41693 4.48797 4.63446 4.65196 4.67145 4.73421 4.80536 4.83052 4.89149 4.90589 4.96199 5.08499 5.14219 5.20495 5.26540 5.32865 5.36835 5.38683 5.48946 5.61827 5.65535 5.66897 5.97154 6.10419 6.22266 6.23060 6.41295 6.63315 7.46947 8.75946 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.002371 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.764311 B =11805.049425 C =12076.185261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 H 0.051 0.949 4 C 0.016 3.984 5 C -0.604 4.604 6 H 0.051 0.949 7 C -0.044 4.044 8 N -0.941 5.941 9 Si 1.116 2.884 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.077 3.923 14 N -0.680 5.680 15 C 0.105 3.895 16 C -0.112 4.112 17 C -0.068 4.068 18 C -0.149 4.149 19 C 0.085 3.915 20 C -0.185 4.185 21 C -0.070 4.070 22 C -0.103 4.103 23 C 0.069 3.931 24 H 0.096 0.904 25 C -0.146 4.146 26 O -0.324 6.324 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.067 0.933 30 H -0.017 1.017 31 H -0.013 1.013 32 H 0.254 0.746 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.341 0.659 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 8.906 -27.830 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.022 4.022 5 C -0.642 4.642 6 H 0.069 0.931 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.937 3.063 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.195 1.195 13 C -0.052 4.052 14 N -0.311 5.311 15 C -0.023 4.023 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.168 4.168 19 C 0.040 3.960 20 C -0.186 4.186 21 C -0.089 4.089 22 C -0.139 4.139 23 C 0.014 3.986 24 H 0.114 0.886 25 C -0.203 4.203 26 O -0.239 6.239 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.002 0.998 31 H 0.006 0.994 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.937 8.702 -26.363 27.777 hybrid contribution 1.070 -0.231 -1.379 1.761 sum 0.134 8.471 -27.741 29.006 Atomic orbital electron populations 1.21475 0.94650 1.00396 1.00459 1.20898 0.96733 0.98241 0.92825 0.93044 1.19194 0.93774 0.94937 0.94266 1.22435 1.37957 1.10398 0.93453 0.93053 1.27401 0.94137 0.97322 1.05209 1.70919 1.38262 1.15972 1.32799 0.82955 0.76927 0.74553 0.71871 1.21042 1.19433 1.19498 1.21871 0.96711 0.97445 0.89176 1.60517 1.64127 1.05796 1.00699 1.20794 0.97773 0.97226 0.86510 1.19690 0.95493 0.98613 0.97446 1.20931 0.95495 0.98744 0.93478 1.20466 1.01247 0.95633 0.99429 1.19801 0.95421 0.91602 0.89189 1.21020 0.97523 1.00814 0.99222 1.20371 0.99924 0.94065 0.94511 1.21942 1.00942 0.97061 0.94002 1.23668 0.80927 0.97396 0.96600 0.88606 1.21912 1.04471 0.91905 1.02008 1.86823 1.33214 1.56858 1.46979 0.94519 0.94606 0.91420 0.99830 0.99427 0.93667 0.96085 0.91598 0.84069 0.93982 0.89858 0.83994 0.84496 0.84876 0.88555 0.87278 0.92072 0.87934 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -2.80 2.48 -10.79 -0.03 -2.83 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.02 0.83 3.76 29.85 0.11 0.94 16 5 C -0.60 -34.81 8.41 25.60 0.22 -34.60 16 6 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 7 C -0.04 -2.59 5.46 84.65 0.46 -2.13 16 8 N -0.94 -59.45 13.65 21.45 0.29 -59.16 16 9 Si 1.12 51.14 29.90 68.60 2.05 53.19 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.08 2.58 5.07 86.31 0.44 3.02 16 14 N -0.68 -18.76 5.94 -517.93 -3.08 -21.84 16 15 C 0.11 2.41 5.82 85.56 0.50 2.90 16 16 C -0.11 -2.45 5.40 -19.83 -0.11 -2.56 16 17 C -0.07 -1.46 9.68 22.21 0.21 -1.24 16 18 C -0.15 -3.24 10.06 22.45 0.23 -3.02 16 19 C 0.09 1.94 7.03 22.68 0.16 2.09 16 20 C -0.18 -3.77 6.27 -19.53 -0.12 -3.90 16 21 C -0.07 -1.45 9.70 22.18 0.22 -1.23 16 22 C -0.10 -1.44 6.65 30.73 0.20 -1.23 16 23 C 0.07 0.97 4.26 31.17 0.13 1.10 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 C -0.15 -1.37 9.60 71.98 0.69 -0.68 16 26 O -0.32 -7.03 10.81 -95.11 -1.03 -8.06 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 1.51 6.95 -2.39 -0.02 1.49 16 29 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 30 H -0.02 -0.93 8.01 -2.39 -0.02 -0.95 16 31 H -0.01 -0.70 8.00 -2.39 -0.02 -0.72 16 32 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.34 9.18 8.72 -89.69 -0.78 8.39 16 36 H 0.04 0.91 8.09 -2.39 -0.02 0.89 16 37 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.10 1.25 7.90 -2.39 -0.02 1.23 16 42 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.66 8.11 -2.39 -0.02 0.65 16 44 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -68.62 365.38 2.46 -66.16 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.27 Total: 16.82 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.95 Total: -47.11 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.79 Total: -81.00 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -1.03 Total: -8.06 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -68.62 2.46 -66.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896829915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds