Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47301 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47463 * 179.97438 * 19 18 17 21 21 C 1.38241 * 120.00161 * 269.72586 * 20 19 18 22 22 C 1.38232 * 119.99744 * 179.76379 * 21 20 19 23 23 C 1.38229 * 120.00226 * 0.51227 * 22 21 20 24 24 C 1.38231 * 119.99930 * 359.73993 * 23 22 21 25 25 C 1.38236 * 119.99793 * 89.99931 * 20 19 18 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 36 36 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 37 37 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 38 38 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 39 39 H 1.09005 * 109.47017 * 300.00185 * 19 18 17 40 40 H 1.09008 * 109.46846 * 59.99564 * 19 18 17 41 41 H 1.08004 * 119.99851 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.99604 * 180.22932 * 22 21 20 43 43 H 1.07997 * 119.99998 * 179.72387 * 23 22 21 44 44 H 1.08004 * 120.00218 * 179.97438 * 24 23 22 45 45 H 1.07988 * 120.00215 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 6 -3.1616 5.1208 -3.7714 20 6 -3.5448 5.7897 -5.0663 21 6 -3.2857 7.1347 -5.2527 22 6 -3.6328 7.7471 -6.4424 23 6 -4.2486 7.0169 -7.4416 24 6 -4.5124 5.6731 -7.2533 25 6 -4.1606 5.0595 -6.0656 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -2.0464 3.0703 -2.3637 36 1 -1.3928 4.6121 -1.7606 37 1 -1.0474 5.3775 -4.0942 38 1 -1.7010 3.8353 -4.6966 39 1 -3.8560 4.3067 -3.5631 40 1 -3.2017 5.8488 -2.9611 41 1 -2.8083 7.7061 -4.4704 42 1 -3.4271 8.7970 -6.5894 43 1 -4.5238 7.4964 -8.3694 44 1 -4.9939 5.1027 -8.0338 45 1 -4.3673 4.0099 -5.9182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = -50.147447 kcal Electronic energy + Delta-G solvation = -21994.923202 eV Core-core repulsion = 18782.737258 eV Total energy + Delta-G solvation = -3212.185944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58810 -39.17301 -35.90534 -35.00513 -32.56609 -32.33685 -31.30776 -31.13803 -28.88387 -27.13385 -24.76640 -22.82135 -22.40876 -21.75735 -20.92146 -20.16008 -19.43549 -17.73510 -17.00123 -16.11775 -16.02975 -15.47905 -15.36097 -15.14712 -14.35787 -13.84405 -13.67722 -13.64215 -13.46845 -13.13279 -12.95606 -12.59771 -12.45110 -12.25743 -12.14863 -11.84038 -11.66782 -11.39131 -11.16781 -11.05742 -10.93716 -10.76630 -10.67171 -10.54681 -10.40657 -9.84572 -9.76784 -9.19063 -9.17823 -9.07573 -8.89101 -8.24310 -8.02530 -6.60300 -4.19044 1.10820 1.14360 3.33895 3.41947 3.46516 3.52531 3.62485 4.05239 4.45007 4.54573 4.58246 4.74250 4.86699 4.91698 4.94545 5.08766 5.18288 5.22065 5.28553 5.39977 5.43959 5.56068 5.68754 5.73776 5.81982 5.83541 5.90181 5.99831 6.09854 6.11682 6.21886 6.23925 6.25950 6.31258 6.41337 6.43776 6.72714 6.76174 6.81825 7.00275 7.08474 7.39699 7.48127 7.72001 8.25499 8.55338 8.73197 9.06280 9.45695 10.77300 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.036312 B = 0.002411 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.910938 B =11608.435626 C =11759.365227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.039 0.961 5 C -0.629 4.629 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.887 5.887 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.498 3.502 15 O -0.554 6.554 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.112 4.112 19 C -0.083 4.083 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.029 0.971 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 10.145 -15.922 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.057 0.943 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.518 5.518 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.284 3.716 15 O -0.433 6.433 16 C -0.183 4.183 17 C -0.139 4.139 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.076 4.076 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.224 0.776 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.674 9.813 -13.612 24.371 hybrid contribution 0.324 0.311 -2.177 2.222 sum -17.350 10.124 -15.788 25.550 Atomic orbital electron populations 1.21886 0.97434 0.98735 1.01974 1.22222 0.93669 0.99831 1.01258 1.18977 0.95655 0.88442 0.82328 0.94307 1.21993 0.89847 1.49948 1.04793 0.92019 1.25616 0.96620 0.91687 1.02122 1.70870 1.13928 1.36521 1.30528 0.84212 0.76025 0.77615 0.76419 1.20890 1.20711 1.19936 1.46298 1.14749 1.56180 1.18011 1.20540 0.82488 0.79112 0.89458 1.90647 1.50801 1.60115 1.41746 1.21690 0.98696 1.01123 0.96777 1.21313 0.95090 1.00641 0.96891 1.21595 0.95279 1.00079 0.98048 1.20659 0.97390 1.00105 0.93905 1.20009 0.97484 0.93906 0.96247 1.21106 1.00365 0.94510 0.97701 1.21153 0.98906 0.99865 0.93800 1.21131 0.99933 0.94553 0.99161 1.21152 1.00108 0.95047 0.97437 1.21096 0.99188 0.99881 0.93534 0.95222 0.93062 0.93238 0.93282 0.91984 0.91914 0.77582 0.89577 0.89688 0.91260 0.91189 0.91876 0.91909 0.90815 0.90794 0.86049 0.86210 0.86336 0.86223 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.53 37.16 0.32 -2.62 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.11 16 3 C 0.25 5.99 1.84 -69.09 -0.13 5.86 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.70 16 5 C -0.63 -17.00 8.92 -34.44 -0.31 -17.31 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.34 5.15 -17.82 -0.09 1.25 16 8 N -0.89 -26.22 13.70 55.43 0.76 -25.47 16 9 Si 1.03 25.18 26.56 -169.99 -4.51 20.66 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.36 6.34 56.52 0.36 -6.00 16 13 N -0.70 -14.11 5.03 -54.93 -0.28 -14.39 16 14 C 0.50 9.20 6.43 -10.98 -0.07 9.13 16 15 O -0.55 -11.97 13.13 5.55 0.07 -11.89 16 16 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 17 C -0.10 -1.22 4.50 -26.73 -0.12 -1.34 16 18 C -0.11 -1.08 5.20 -26.73 -0.14 -1.21 16 19 C -0.08 -0.75 5.35 -27.88 -0.15 -0.90 16 20 C -0.08 -0.71 5.13 -104.62 -0.54 -1.25 16 21 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 22 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 23 C -0.13 -1.03 10.05 -39.59 -0.40 -1.42 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 28 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.48 5.77 -51.93 -0.30 1.18 16 31 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 32 H 0.39 7.00 8.53 -40.82 -0.35 6.66 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.07 0.65 8.08 -51.92 -0.42 0.23 16 41 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -31.01 362.76 -9.59 -40.60 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.61 Total: 5.57 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -3.49 Total: -20.56 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.48 Total: -39.85 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.51 Total: 20.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.01 -9.59 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.544 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds