Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47301 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47463 * 179.97438 * 19 18 17 21 21 C 1.38241 * 120.00161 * 269.72586 * 20 19 18 22 22 C 1.38232 * 119.99744 * 179.76379 * 21 20 19 23 23 C 1.38229 * 120.00226 * 0.51227 * 22 21 20 24 24 C 1.38231 * 119.99930 * 359.73993 * 23 22 21 25 25 C 1.38236 * 119.99793 * 89.99931 * 20 19 18 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 36 36 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 37 37 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 38 38 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 39 39 H 1.09005 * 109.47017 * 300.00185 * 19 18 17 40 40 H 1.09008 * 109.46846 * 59.99564 * 19 18 17 41 41 H 1.08004 * 119.99851 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.99604 * 180.22932 * 22 21 20 43 43 H 1.07997 * 119.99998 * 179.72387 * 23 22 21 44 44 H 1.08004 * 120.00218 * 179.97438 * 24 23 22 45 45 H 1.07988 * 120.00215 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 6 -3.1616 5.1208 -3.7714 20 6 -3.5448 5.7897 -5.0663 21 6 -3.2857 7.1347 -5.2527 22 6 -3.6328 7.7471 -6.4424 23 6 -4.2486 7.0169 -7.4416 24 6 -4.5124 5.6731 -7.2533 25 6 -4.1606 5.0595 -6.0656 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -2.0464 3.0703 -2.3637 36 1 -1.3928 4.6121 -1.7606 37 1 -1.0474 5.3775 -4.0942 38 1 -1.7010 3.8353 -4.6966 39 1 -3.8560 4.3067 -3.5631 40 1 -3.2017 5.8488 -2.9611 41 1 -2.8083 7.7061 -4.4704 42 1 -3.4271 8.7970 -6.5894 43 1 -4.5238 7.4964 -8.3694 44 1 -4.9939 5.1027 -8.0338 45 1 -4.3673 4.0099 -5.9182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = -66.997982 kcal Electronic energy + Delta-G solvation = -21995.653896 eV Core-core repulsion = 18782.737258 eV Total energy + Delta-G solvation = -3212.916638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77503 -40.13667 -37.27105 -36.29086 -34.45784 -33.55415 -32.77673 -31.72749 -29.91288 -28.84875 -25.76319 -24.26054 -23.41691 -22.81162 -21.70504 -21.60911 -21.09403 -19.72194 -17.66621 -17.59175 -17.18613 -16.88314 -16.23223 -16.00837 -15.64334 -15.37015 -14.97392 -14.59549 -14.48406 -14.32594 -14.20643 -14.11856 -13.97588 -13.65537 -13.24294 -13.09395 -12.71134 -12.63506 -12.47427 -12.30362 -12.19086 -12.05592 -11.79621 -11.77415 -11.61738 -11.56690 -11.40065 -11.22473 -10.61709 -10.41146 -9.78627 -9.73576 -9.54278 -8.81352 -6.40506 0.49099 0.53503 1.45751 1.47858 1.69264 1.88133 2.41791 2.59383 2.91974 2.92813 3.79326 3.95188 3.95674 4.11723 4.14565 4.22308 4.31641 4.33173 4.40346 4.43309 4.52564 4.59113 4.67423 4.70965 4.72658 4.81117 4.88160 4.94524 4.97973 5.09049 5.14999 5.20585 5.23687 5.25585 5.32010 5.36565 5.50332 5.55487 5.62183 5.66488 5.73507 5.74451 5.79272 6.03121 6.17406 6.55588 6.94511 7.28003 7.54939 8.54914 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.036312 B = 0.002411 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.910938 B =11608.435626 C =11759.365227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.253 3.747 4 H 0.018 0.982 5 C -0.626 4.626 6 H 0.041 0.959 7 C 0.005 3.995 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.256 1.256 13 N -0.708 5.708 14 C 0.495 3.505 15 O -0.586 6.586 16 C -0.132 4.132 17 C -0.095 4.095 18 C -0.101 4.101 19 C -0.080 4.080 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.262 0.738 32 H 0.402 0.598 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.934 10.608 -17.365 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.148 3.852 4 H 0.036 0.964 5 C -0.664 4.664 6 H 0.060 0.940 7 C -0.198 4.198 8 N -0.549 5.549 9 Si 0.886 3.114 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.181 1.181 13 N -0.357 5.357 14 C 0.283 3.717 15 O -0.467 6.467 16 C -0.172 4.172 17 C -0.134 4.134 18 C -0.139 4.139 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.236 0.764 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.322 10.288 -15.092 26.588 hybrid contribution 0.829 0.223 -1.814 2.007 sum -18.493 10.511 -16.906 27.171 Atomic orbital electron populations 1.21756 0.95504 1.00212 1.01425 1.22113 0.95294 0.98505 1.00768 1.18672 0.93344 0.89486 0.83679 0.96406 1.22170 0.91599 1.48662 1.03932 0.94049 1.26670 0.96757 0.91323 1.05017 1.70959 1.15041 1.38889 1.30019 0.83759 0.75775 0.78235 0.73617 1.20582 1.20040 1.18110 1.46183 1.15933 1.56570 1.17013 1.21442 0.81220 0.78135 0.90897 1.90633 1.51533 1.61097 1.43445 1.21713 0.99503 1.01836 0.94101 1.21253 0.94253 1.00023 0.97831 1.21480 0.95660 1.00121 0.96613 1.20605 0.97064 1.00082 0.93995 1.20083 0.98216 0.94256 0.96398 1.21306 1.00780 0.94654 0.98366 1.21436 0.98678 1.00857 0.93628 1.21452 0.99456 0.94660 0.99899 1.21445 0.99946 0.95466 0.97694 1.21305 0.99377 1.00470 0.93832 0.92684 0.94404 0.92968 0.92889 0.93374 0.92926 0.76369 0.87607 0.87122 0.92295 0.92678 0.91418 0.91139 0.90758 0.90963 0.85437 0.84566 0.84398 0.84474 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.53 71.98 0.61 -4.55 16 2 C -0.13 -5.66 5.37 30.60 0.16 -5.49 16 3 C 0.25 12.05 1.84 44.25 0.08 12.13 16 4 H 0.02 0.94 6.12 -2.39 -0.01 0.93 16 5 C -0.63 -34.12 8.92 25.60 0.23 -33.90 16 6 H 0.04 2.38 7.96 -2.91 -0.02 2.35 16 7 C 0.01 0.30 5.15 84.66 0.44 0.73 16 8 N -0.92 -54.96 13.70 21.45 0.29 -54.67 16 9 Si 1.06 50.81 26.56 68.60 1.82 52.63 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.46 6.34 99.48 0.63 -10.83 16 13 N -0.71 -27.62 5.03 -446.10 -2.24 -29.86 16 14 C 0.49 17.55 6.43 87.66 0.56 18.11 16 15 O -0.59 -24.83 13.13 -3.04 -0.04 -24.87 16 16 C -0.13 -3.12 5.70 29.85 0.17 -2.95 16 17 C -0.10 -2.14 4.50 30.59 0.14 -2.00 16 18 C -0.10 -1.72 5.20 30.59 0.16 -1.56 16 19 C -0.08 -1.33 5.35 29.85 0.16 -1.17 16 20 C -0.09 -1.54 5.13 -19.87 -0.10 -1.64 16 21 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 22 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 23 C -0.14 -1.89 10.05 22.27 0.22 -1.67 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 25 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 26 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 28 H 0.05 2.00 5.63 -2.39 -0.01 1.99 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.24 5.77 -2.39 -0.01 2.23 16 31 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 32 H 0.40 13.90 8.53 -92.71 -0.79 13.11 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 40 H 0.07 1.20 8.08 -2.38 -0.02 1.18 16 41 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 45 H 0.13 1.76 8.06 -2.92 -0.02 1.73 16 Total: -1.00 -66.59 362.76 3.60 -63.00 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.05 Total: 24.90 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.72 Total: -31.12 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.95 Total: -84.52 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.04 Total: -24.87 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.82 Total: 52.63 kcal Total: -66.59 3.60 -63.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.003 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds