Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47231 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47584 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47633 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00057 * 269.73005 * 20 19 18 22 22 C 1.38239 * 119.99977 * 179.76522 * 21 20 19 23 23 C 1.38233 * 119.99903 * 0.50261 * 22 21 20 24 24 C 1.38234 * 119.99906 * 359.75110 * 23 22 21 25 25 C 1.38233 * 119.99960 * 89.99788 * 20 19 18 26 26 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 27 27 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 34 34 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 35 35 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 36 36 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 37 37 H 1.08999 * 109.47343 * 300.00090 * 18 17 16 38 38 H 1.09010 * 109.47369 * 59.99437 * 18 17 16 39 39 H 1.08999 * 109.47180 * 300.00589 * 19 18 17 40 40 H 1.09006 * 109.47143 * 60.00006 * 19 18 17 41 41 H 1.08007 * 120.00134 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.99709 * 180.22935 * 22 21 20 43 43 H 1.08002 * 120.00232 * 179.72799 * 23 22 21 44 44 H 1.07998 * 119.99978 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00392 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 6 -1.7821 4.5901 3.8240 19 6 -3.1985 5.1523 3.6883 20 6 -3.5970 5.8265 4.9758 21 6 -4.2339 5.1029 5.9666 22 6 -4.5951 5.7202 7.1496 23 6 -4.3287 7.0635 7.3376 24 6 -3.6965 7.7884 6.3447 25 6 -3.3306 7.1698 5.1638 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 0.0655 2.6181 3.4660 34 1 0.7332 4.1557 2.8675 35 1 -1.4048 4.6303 1.7038 36 1 -2.0718 3.0925 2.3026 37 1 -1.7550 3.8653 4.6377 38 1 -1.0879 5.4028 4.0383 39 1 -3.2253 5.8772 2.8747 40 1 -3.8930 4.3399 3.4740 41 1 -4.4463 4.0544 5.8178 42 1 -5.0893 5.1539 7.9251 43 1 -4.6148 7.5469 8.2600 44 1 -3.4888 8.8380 6.4914 45 1 -2.8373 7.7364 4.3878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -49.671427 kcal Electronic energy + Delta-G solvation = -21922.056396 eV Core-core repulsion = 18709.891094 eV Total energy + Delta-G solvation = -3212.165302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.54360 -38.99124 -35.79021 -34.85513 -32.47964 -32.21409 -31.10533 -30.86344 -28.79235 -26.91929 -24.73549 -22.95746 -22.78824 -21.63692 -20.86349 -19.97709 -19.22789 -17.05633 -16.90297 -15.95776 -15.63392 -15.37439 -15.23686 -15.12296 -14.27045 -14.17416 -13.62794 -13.62160 -13.47985 -13.01276 -12.77034 -12.68368 -12.23546 -11.99004 -11.78332 -11.52632 -11.31189 -11.23875 -11.10793 -10.98692 -10.97389 -10.83703 -10.78956 -10.48184 -10.29837 -10.12254 -9.60914 -9.14618 -9.02864 -8.94138 -8.81078 -8.47730 -7.75731 -6.10691 -4.19994 1.14179 1.17538 3.24633 3.31632 3.33728 3.51237 3.55961 4.15378 4.39186 4.60900 4.61917 4.77561 4.89997 4.97117 5.02123 5.20151 5.25824 5.27601 5.33869 5.45983 5.52458 5.63613 5.74231 5.79841 5.88102 5.88220 6.00946 6.06658 6.25177 6.28430 6.31855 6.41436 6.47454 6.48182 6.50359 6.68986 6.79466 7.06645 7.22843 7.40465 7.52092 7.64693 7.77213 7.93652 8.21135 8.73955 8.81346 9.22412 9.48019 10.94570 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034054 B = 0.002337 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.017615 B =11975.849353 C =12406.029371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.498 3.502 15 O -0.552 6.552 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 10.295 16.989 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.431 6.431 16 C -0.183 4.183 17 C -0.139 4.139 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.076 4.076 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.090 10.161 16.101 23.105 hybrid contribution 1.374 -0.055 0.349 1.419 sum -11.716 10.106 16.450 22.583 Atomic orbital electron populations 1.21827 0.98377 0.97928 1.01217 1.21928 0.92602 0.99911 1.02172 1.18754 0.94078 0.89162 0.81274 0.93422 1.21250 0.90844 1.38880 1.06196 0.92161 1.24897 0.98567 0.94887 0.95418 1.69900 1.35068 1.37651 1.09374 0.86464 0.84964 0.78408 0.77353 1.20573 1.21093 1.19901 1.46522 1.15009 1.56015 1.18416 1.20451 0.82615 0.79274 0.89330 1.90655 1.51519 1.60179 1.40777 1.21697 0.98521 1.01000 0.97110 1.21307 0.95233 1.00568 0.96825 1.21594 0.95204 1.00005 0.98166 1.20663 0.97425 1.00062 0.93947 1.20015 0.97322 0.93931 0.96309 1.21103 0.99086 0.99910 0.93600 1.21150 1.00132 0.95026 0.97440 1.21127 0.99947 0.94576 0.99172 1.21151 0.98840 0.99838 0.93915 1.21104 1.00341 0.94499 0.97744 0.93196 0.95952 0.94283 0.88376 0.95142 0.92605 0.78084 0.89832 0.89745 0.91238 0.91270 0.91944 0.91920 0.90787 0.90810 0.86063 0.86239 0.86364 0.86234 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.40 7.57 -51.93 -0.39 1.01 16 5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.22 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.67 5.02 -54.93 -0.28 -14.94 16 14 C 0.50 9.63 6.40 -10.98 -0.07 9.56 16 15 O -0.55 -12.67 13.15 5.56 0.07 -12.59 16 16 C -0.14 -1.96 5.70 -27.88 -0.16 -2.12 16 17 C -0.10 -1.29 4.50 -26.74 -0.12 -1.41 16 18 C -0.11 -1.12 5.20 -26.74 -0.14 -1.26 16 19 C -0.08 -0.79 5.35 -27.89 -0.15 -0.93 16 20 C -0.08 -0.72 5.13 -104.63 -0.54 -1.26 16 21 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 23 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.85 5.67 -51.93 -0.29 0.55 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -30.38 365.51 -10.23 -40.61 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.63 Total: 6.73 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.51 Total: -16.73 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.35 Total: -39.16 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.38 -10.23 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.062 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds