Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47231 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47584 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47633 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00057 * 269.73005 * 20 19 18 22 22 C 1.38239 * 119.99977 * 179.76522 * 21 20 19 23 23 C 1.38233 * 119.99903 * 0.50261 * 22 21 20 24 24 C 1.38234 * 119.99906 * 359.75110 * 23 22 21 25 25 C 1.38233 * 119.99960 * 89.99788 * 20 19 18 26 26 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 27 27 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 34 34 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 35 35 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 36 36 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 37 37 H 1.08999 * 109.47343 * 300.00090 * 18 17 16 38 38 H 1.09010 * 109.47369 * 59.99437 * 18 17 16 39 39 H 1.08999 * 109.47180 * 300.00589 * 19 18 17 40 40 H 1.09006 * 109.47143 * 60.00006 * 19 18 17 41 41 H 1.08007 * 120.00134 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.99709 * 180.22935 * 22 21 20 43 43 H 1.08002 * 120.00232 * 179.72799 * 23 22 21 44 44 H 1.07998 * 119.99978 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00392 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 6 -1.7821 4.5901 3.8240 19 6 -3.1985 5.1523 3.6883 20 6 -3.5970 5.8265 4.9758 21 6 -4.2339 5.1029 5.9666 22 6 -4.5951 5.7202 7.1496 23 6 -4.3287 7.0635 7.3376 24 6 -3.6965 7.7884 6.3447 25 6 -3.3306 7.1698 5.1638 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 0.0655 2.6181 3.4660 34 1 0.7332 4.1557 2.8675 35 1 -1.4048 4.6303 1.7038 36 1 -2.0718 3.0925 2.3026 37 1 -1.7550 3.8653 4.6377 38 1 -1.0879 5.4028 4.0383 39 1 -3.2253 5.8772 2.8747 40 1 -3.8930 4.3399 3.4740 41 1 -4.4463 4.0544 5.8178 42 1 -5.0893 5.1539 7.9251 43 1 -4.6148 7.5469 8.2600 44 1 -3.4888 8.8380 6.4914 45 1 -2.8373 7.7364 4.3878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = -65.352469 kcal Electronic energy + Delta-G solvation = -21922.736377 eV Core-core repulsion = 18709.891094 eV Total energy + Delta-G solvation = -3212.845283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66983 -40.11997 -37.16383 -36.25701 -34.26307 -33.39930 -32.56971 -31.71453 -29.85574 -28.71055 -25.86051 -24.76167 -23.40340 -22.70917 -21.65570 -21.58921 -20.95370 -18.80247 -17.57730 -17.32705 -17.13343 -16.92177 -16.19854 -16.07245 -15.93369 -15.38626 -14.85132 -14.62913 -14.32436 -14.24101 -14.07549 -13.95990 -13.56000 -13.21367 -13.17190 -13.09641 -12.89523 -12.66042 -12.63003 -12.20368 -12.15950 -12.05798 -12.00475 -11.77851 -11.60669 -11.56905 -11.38507 -11.03479 -10.60313 -10.44579 -9.77323 -9.56369 -9.52944 -8.15465 -6.32877 0.50382 0.54776 1.44414 1.45048 1.55483 1.97092 2.37753 2.74953 2.94042 3.13637 3.82340 3.96840 3.99975 4.16236 4.16553 4.24478 4.34682 4.44677 4.49829 4.58042 4.58388 4.68895 4.72848 4.73904 4.76843 4.86228 4.96393 4.97993 5.08884 5.16292 5.21985 5.25601 5.28737 5.38207 5.45367 5.52286 5.57576 5.63436 5.67633 5.67873 5.80703 5.81702 5.96791 6.18620 6.19171 6.76475 7.08238 7.35160 7.69052 8.89746 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034054 B = 0.002337 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.017615 B =11975.849353 C =12406.029371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.710 5.710 14 C 0.491 3.509 15 O -0.593 6.593 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.100 4.100 19 C -0.081 4.081 20 C -0.089 4.089 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.133 4.133 26 H 0.023 0.977 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 10.903 19.617 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.360 5.360 14 C 0.279 3.721 15 O -0.475 6.475 16 C -0.170 4.170 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.151 4.151 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.547 10.784 18.775 25.024 hybrid contribution 1.137 -0.207 -0.468 1.246 sum -11.410 10.577 18.307 24.025 Atomic orbital electron populations 1.21660 0.96954 0.99051 1.00249 1.21778 0.93783 0.99277 1.01162 1.18327 0.93507 0.89159 0.81746 0.98739 1.21603 0.91582 1.38772 1.06603 0.91093 1.25798 1.03347 0.94475 0.95073 1.70057 1.37032 1.38418 1.09905 0.85369 0.79134 0.78859 0.77109 1.19671 1.21323 1.18909 1.46327 1.16108 1.56140 1.17377 1.21475 0.81431 0.78346 0.90807 1.90643 1.52536 1.61450 1.42849 1.21706 0.99277 1.01815 0.94177 1.21250 0.94480 0.99836 0.97879 1.21472 0.95606 1.00100 0.96549 1.20607 0.97106 0.99988 0.94133 1.20067 0.98144 0.94319 0.96378 1.21304 0.99300 1.00469 0.93934 1.21442 0.99963 0.95460 0.97644 1.21455 0.99416 0.94655 0.99907 1.21437 0.98571 1.00848 0.93689 1.21300 1.00760 0.94587 0.98432 0.95762 0.93658 0.93576 0.91204 0.94105 0.92663 0.76230 0.87041 0.87319 0.92946 0.92680 0.91048 0.91212 0.91044 0.90925 0.85339 0.84460 0.84350 0.84517 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.52 71.98 0.61 -4.93 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.27 2.24 44.24 0.10 14.37 16 4 H -0.01 -0.33 7.57 -2.39 -0.02 -0.34 16 5 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -52.84 11.29 21.45 0.24 -52.60 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 13 N -0.71 -28.96 5.02 -446.09 -2.24 -31.20 16 14 C 0.49 18.79 6.40 87.66 0.56 19.36 16 15 O -0.59 -27.89 13.15 -3.03 -0.04 -27.93 16 16 C -0.13 -3.28 5.70 29.85 0.17 -3.11 16 17 C -0.10 -2.35 4.50 30.59 0.14 -2.21 16 18 C -0.10 -1.81 5.20 30.59 0.16 -1.65 16 19 C -0.08 -1.45 5.35 29.85 0.16 -1.29 16 20 C -0.09 -1.60 5.13 -19.87 -0.10 -1.70 16 21 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 22 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.14 -1.93 10.05 22.27 0.22 -1.70 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 25 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 26 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 27 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.05 2.00 5.67 -2.39 -0.01 1.99 16 29 H 0.07 3.90 5.95 -2.38 -0.01 3.89 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.40 13.77 8.54 -92.70 -0.79 12.98 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 41 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -67.34 365.51 3.89 -63.45 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.16 Total: 27.85 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 3.74 Total: -23.82 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.00 Total: -83.80 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.93 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.34 3.89 -63.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.906 kcal (2) G-P(sol) polarization free energy of solvation -67.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds