Wall clock time and date at job start Tue Mar 31 2020 06:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.81371 * 2 1 4 4 C 1.54705 * 110.74895 * 236.67674 * 2 1 3 5 5 C 1.51641 * 101.96129 * 266.98427 * 4 2 1 6 6 C 1.37738 * 132.17238 * 164.55697 * 5 4 2 7 7 C 1.38350 * 119.97909 * 180.37670 * 6 5 4 8 8 C 1.50705 * 120.11904 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46637 * 90.00170 * 8 7 6 10 10 C 1.46907 * 110.99632 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46884 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.46863 * 299.99217 * 11 10 9 13 13 C 1.52996 * 109.47374 * 59.99372 * 11 10 9 14 14 C 1.50701 * 109.46921 * 179.97438 * 11 10 9 15 15 H 1.08000 * 119.99847 * 1.23428 * 14 11 10 16 16 C 1.37875 * 120.00292 * 181.23964 * 14 11 10 17 17 N 1.31512 * 120.00387 * 194.11235 * 16 14 11 18 18 Si 1.86804 * 119.99666 * 14.10768 * 16 14 11 19 19 H 1.48498 * 109.47058 * 84.53828 * 18 16 14 20 20 H 1.48495 * 109.47267 * 204.53387 * 18 16 14 21 21 H 1.48506 * 109.47290 * 324.53530 * 18 16 14 22 22 C 1.38288 * 119.76796 * 0.02562 * 7 6 5 23 23 C 1.37931 * 120.34970 * 359.81307 * 22 7 6 24 24 C 1.38884 * 107.04022 * 344.59694 * 5 4 2 25 25 O 1.36135 * 111.23466 * 358.92770 * 24 5 4 26 26 H 1.08999 * 109.47906 * 183.32236 * 1 2 3 27 27 H 1.09000 * 109.47336 * 303.32392 * 1 2 3 28 28 H 1.09008 * 109.47140 * 63.31498 * 1 2 3 29 29 H 1.08995 * 110.94285 * 148.80616 * 4 2 1 30 30 H 1.09003 * 110.93672 * 25.16100 * 4 2 1 31 31 H 1.08002 * 120.01019 * 0.35424 * 6 5 4 32 32 H 1.08998 * 109.47177 * 210.00084 * 8 7 6 33 33 H 1.09000 * 109.47142 * 330.00233 * 8 7 6 34 34 H 1.00894 * 111.00042 * 303.94812 * 9 8 7 35 35 H 1.09009 * 109.46401 * 299.99714 * 10 9 8 36 36 H 1.08994 * 109.47686 * 59.99613 * 10 9 8 37 37 H 1.08993 * 109.46930 * 69.52293 * 12 11 10 38 38 H 1.08997 * 109.46656 * 189.51723 * 12 11 10 39 39 H 1.09001 * 109.46927 * 309.52137 * 12 11 10 40 40 H 1.09004 * 109.47225 * 60.00437 * 13 11 10 41 41 H 1.09007 * 109.46634 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.47144 * 299.99788 * 13 11 10 43 43 H 0.96999 * 120.00127 * 180.02562 * 17 16 14 44 44 H 1.07993 * 119.82755 * 179.83068 * 22 7 6 45 45 H 1.07997 * 119.88396 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0780 -0.7948 -1.2088 5 6 2.2624 -2.1789 -0.6175 6 6 2.4519 -3.4142 -1.1966 7 6 2.5864 -4.5376 -0.4004 8 6 2.7945 -5.8906 -1.0306 9 7 4.2332 -6.1378 -1.1956 10 6 4.4748 -7.4506 -1.8091 11 6 5.9807 -7.6718 -1.9637 12 6 6.5682 -6.5762 -2.8557 13 6 6.6476 -7.6214 -0.5877 14 6 6.2286 -9.0188 -2.5926 15 1 5.3949 -9.6450 -2.8739 16 6 7.5196 -9.4517 -2.8087 17 7 7.7451 -10.4808 -3.5958 18 14 8.9487 -8.5762 -1.9834 19 1 9.1371 -9.1186 -0.6139 20 1 10.1858 -8.7924 -2.7758 21 1 8.6592 -7.1218 -1.9045 22 6 2.5292 -4.4147 0.9758 23 6 2.3428 -3.1782 1.5579 24 6 2.2106 -2.0416 0.7636 25 8 2.0399 -0.7399 1.1236 26 1 -0.3635 -1.0259 0.0596 27 1 -0.3634 0.5646 0.8587 28 1 -0.3634 0.4615 -0.9183 29 1 3.0304 -0.3849 -1.5451 30 1 1.3543 -0.8125 -2.0238 31 1 2.4952 -3.5058 -2.2718 32 1 2.3648 -6.6601 -0.3894 33 1 2.3073 -5.9162 -2.0054 34 1 4.6671 -5.4025 -1.7331 35 1 4.0565 -8.2312 -1.1734 36 1 3.9993 -7.4867 -2.7892 37 1 6.5411 -5.6237 -2.3266 38 1 7.6000 -6.8245 -3.1042 39 1 5.9820 -6.5000 -3.7715 40 1 6.2291 -8.4020 0.0477 41 1 7.7205 -7.7795 -0.6979 42 1 6.4684 -6.6474 -0.1326 43 1 8.6534 -10.7856 -3.7475 44 1 2.6313 -5.2913 1.5981 45 1 2.2989 -3.0909 2.6335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922177105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:46 Heat of formation + Delta-G solvation = 1.403869 kcal Electronic energy + Delta-G solvation = -22829.733816 eV Core-core repulsion = 19619.783305 eV Total energy + Delta-G solvation = -3209.950511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35229 -38.26986 -36.95621 -34.05540 -33.33925 -31.71170 -30.96815 -30.09576 -27.16570 -26.18132 -25.81653 -24.96760 -23.32206 -22.30816 -21.77815 -20.85416 -18.74179 -17.32341 -16.88236 -16.11051 -16.04940 -15.62986 -15.12430 -14.96019 -14.34082 -13.95946 -13.90732 -13.54113 -13.21985 -13.12387 -12.81829 -12.76943 -12.59991 -12.53185 -12.32260 -12.11188 -11.93051 -11.82768 -11.55815 -11.27389 -10.96621 -10.91549 -10.74592 -10.27264 -10.03798 -9.97577 -9.83439 -8.95846 -8.93016 -8.53137 -8.35782 -8.14777 -7.83152 -6.06641 -4.02227 1.24459 1.29965 3.06344 3.34877 3.44438 3.47478 3.60599 4.15872 4.29581 4.46166 4.54085 4.75497 4.79204 4.85602 4.97656 5.04919 5.19290 5.26878 5.29149 5.38330 5.42463 5.52532 5.60887 5.61803 5.73941 5.82703 5.97304 6.05820 6.14255 6.22477 6.30855 6.33419 6.51381 6.55408 6.63561 6.66593 6.69405 6.86900 6.95837 7.04594 7.10340 7.38496 7.51773 7.60306 7.81659 7.96237 8.56594 8.98075 9.59813 11.06753 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.003025 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.173477 B = 9254.518648 C = 9301.044747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.113 0.887 4 C -0.106 4.106 5 C -0.175 4.175 6 C -0.066 4.066 7 C -0.099 4.099 8 C 0.100 3.900 9 N -0.685 5.685 10 C 0.084 3.916 11 C 0.041 3.959 12 C -0.144 4.144 13 C -0.135 4.135 14 C -0.512 4.512 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.287 1.287 20 H -0.309 1.309 21 H -0.248 1.248 22 C -0.063 4.063 23 C -0.139 4.139 24 C 0.098 3.902 25 O -0.304 6.304 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.337 0.663 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.133 0.867 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 20.346 6.601 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.131 0.869 4 C -0.143 4.143 5 C -0.176 4.176 6 C -0.084 4.084 7 C -0.100 4.100 8 C -0.029 4.029 9 N -0.317 5.317 10 C -0.044 4.044 11 C 0.040 3.960 12 C -0.201 4.201 13 C -0.192 4.192 14 C -0.550 4.550 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.215 1.215 20 H -0.238 1.238 21 H -0.174 1.174 22 C -0.082 4.082 23 C -0.158 4.158 24 C 0.053 3.947 25 O -0.218 6.218 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.151 0.849 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.864 20.088 7.354 25.492 hybrid contribution 0.621 0.471 -0.670 1.028 sum -13.243 20.560 6.684 25.352 Atomic orbital electron populations 1.22238 0.94314 1.03304 1.02915 1.23409 0.94630 0.96306 0.83620 0.86890 1.21837 1.02532 0.91619 0.98269 1.20639 1.07908 0.95140 0.93877 1.20203 0.98295 0.90237 0.99695 1.19774 1.01558 0.95072 0.93556 1.20809 0.90839 0.92773 0.98473 1.60676 1.09291 1.05537 1.56158 1.21985 0.98265 0.88520 0.95678 1.18460 0.90308 0.95171 0.92080 1.22296 1.01434 0.97348 0.99049 1.22163 0.98356 0.99899 0.98773 1.20870 0.93519 1.00647 1.39994 0.91098 1.24981 0.98811 0.94894 0.94211 1.69966 1.21075 1.27281 1.35184 0.87254 0.80843 0.81313 0.78479 1.21495 1.23812 1.17402 1.20787 0.96566 0.96416 0.94409 1.20255 1.06472 0.89470 0.99596 1.19532 0.97499 0.84808 0.92837 1.86886 1.80167 1.16823 1.37922 0.91772 0.91454 0.90751 0.89226 0.89191 0.86098 0.90364 0.94921 0.84420 0.91716 0.95941 0.95416 0.92797 0.94246 0.93626 0.95221 0.93747 0.92761 0.84908 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.51 37.16 0.35 -0.80 16 2 C 0.08 0.63 4.32 -25.84 -0.11 0.51 16 3 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -0.90 6.65 -26.52 -0.18 -1.07 16 5 C -0.17 -2.02 6.27 -104.10 -0.65 -2.67 16 6 C -0.07 -0.78 9.70 -39.72 -0.39 -1.17 16 7 C -0.10 -1.26 5.40 -104.56 -0.56 -1.82 16 8 C 0.10 1.36 5.82 -4.97 -0.03 1.33 16 9 N -0.68 -11.19 5.71 -115.05 -0.66 -11.85 16 10 C 0.08 1.63 4.57 -3.82 -0.02 1.61 16 11 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 12 C -0.14 -3.09 7.24 37.16 0.27 -2.82 16 13 C -0.14 -3.00 7.54 37.16 0.28 -2.72 16 14 C -0.51 -14.13 8.62 -34.44 -0.30 -14.42 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 2.09 5.32 -17.82 -0.09 1.99 16 17 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 18 Si 0.89 22.25 22.79 -169.99 -3.87 18.38 16 19 H -0.29 -7.20 7.10 56.52 0.40 -6.80 16 20 H -0.31 -7.87 7.11 56.52 0.40 -7.46 16 21 H -0.25 -5.78 4.65 56.52 0.26 -5.52 16 22 C -0.06 -0.77 9.68 -39.68 -0.38 -1.15 16 23 C -0.14 -1.67 10.06 -39.30 -0.40 -2.07 16 24 C 0.10 1.22 6.91 -38.95 -0.27 0.95 16 25 O -0.30 -3.58 10.82 -20.17 -0.22 -3.80 16 26 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.62 7.92 -51.93 -0.41 0.21 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.03 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.34 5.47 6.99 -39.30 -0.27 5.19 16 35 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.03 0.52 7.06 -51.93 -0.37 0.15 16 38 H 0.05 1.24 4.30 -51.93 -0.22 1.02 16 39 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.69 2.26 -51.92 -0.12 0.57 16 42 H 0.04 0.90 7.60 -51.93 -0.39 0.50 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -30.88 346.26 -8.71 -39.59 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.39 Total: 2.66 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.56 Total: -23.48 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.12 Total: -38.57 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.22 Total: -3.80 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -3.87 Total: 18.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.88 -8.71 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922177105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.991 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds