Wall clock time and date at job start Tue Mar 31 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.81371 * 2 1 4 4 C 1.54705 * 110.74895 * 236.67674 * 2 1 3 5 5 C 1.51641 * 101.96129 * 266.98427 * 4 2 1 6 6 C 1.37738 * 132.17238 * 164.55697 * 5 4 2 7 7 C 1.38350 * 119.97909 * 180.37670 * 6 5 4 8 8 C 1.50705 * 120.11904 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46637 * 90.00170 * 8 7 6 10 10 C 1.46907 * 110.99632 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46884 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.46863 * 299.99217 * 11 10 9 13 13 C 1.52996 * 109.47374 * 59.99372 * 11 10 9 14 14 C 1.50701 * 109.46921 * 179.97438 * 11 10 9 15 15 H 1.08000 * 119.99847 * 1.23428 * 14 11 10 16 16 C 1.37875 * 120.00292 * 181.23964 * 14 11 10 17 17 N 1.31512 * 120.00387 * 194.11235 * 16 14 11 18 18 Si 1.86804 * 119.99666 * 14.10768 * 16 14 11 19 19 H 1.48498 * 109.47058 * 84.53828 * 18 16 14 20 20 H 1.48495 * 109.47267 * 204.53387 * 18 16 14 21 21 H 1.48506 * 109.47290 * 324.53530 * 18 16 14 22 22 C 1.38288 * 119.76796 * 0.02562 * 7 6 5 23 23 C 1.37931 * 120.34970 * 359.81307 * 22 7 6 24 24 C 1.38884 * 107.04022 * 344.59694 * 5 4 2 25 25 O 1.36135 * 111.23466 * 358.92770 * 24 5 4 26 26 H 1.08999 * 109.47906 * 183.32236 * 1 2 3 27 27 H 1.09000 * 109.47336 * 303.32392 * 1 2 3 28 28 H 1.09008 * 109.47140 * 63.31498 * 1 2 3 29 29 H 1.08995 * 110.94285 * 148.80616 * 4 2 1 30 30 H 1.09003 * 110.93672 * 25.16100 * 4 2 1 31 31 H 1.08002 * 120.01019 * 0.35424 * 6 5 4 32 32 H 1.08998 * 109.47177 * 210.00084 * 8 7 6 33 33 H 1.09000 * 109.47142 * 330.00233 * 8 7 6 34 34 H 1.00894 * 111.00042 * 303.94812 * 9 8 7 35 35 H 1.09009 * 109.46401 * 299.99714 * 10 9 8 36 36 H 1.08994 * 109.47686 * 59.99613 * 10 9 8 37 37 H 1.08993 * 109.46930 * 69.52293 * 12 11 10 38 38 H 1.08997 * 109.46656 * 189.51723 * 12 11 10 39 39 H 1.09001 * 109.46927 * 309.52137 * 12 11 10 40 40 H 1.09004 * 109.47225 * 60.00437 * 13 11 10 41 41 H 1.09007 * 109.46634 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.47144 * 299.99788 * 13 11 10 43 43 H 0.96999 * 120.00127 * 180.02562 * 17 16 14 44 44 H 1.07993 * 119.82755 * 179.83068 * 22 7 6 45 45 H 1.07997 * 119.88396 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0780 -0.7948 -1.2088 5 6 2.2624 -2.1789 -0.6175 6 6 2.4519 -3.4142 -1.1966 7 6 2.5864 -4.5376 -0.4004 8 6 2.7945 -5.8906 -1.0306 9 7 4.2332 -6.1378 -1.1956 10 6 4.4748 -7.4506 -1.8091 11 6 5.9807 -7.6718 -1.9637 12 6 6.5682 -6.5762 -2.8557 13 6 6.6476 -7.6214 -0.5877 14 6 6.2286 -9.0188 -2.5926 15 1 5.3949 -9.6450 -2.8739 16 6 7.5196 -9.4517 -2.8087 17 7 7.7451 -10.4808 -3.5958 18 14 8.9487 -8.5762 -1.9834 19 1 9.1371 -9.1186 -0.6139 20 1 10.1858 -8.7924 -2.7758 21 1 8.6592 -7.1218 -1.9045 22 6 2.5292 -4.4147 0.9758 23 6 2.3428 -3.1782 1.5579 24 6 2.2106 -2.0416 0.7636 25 8 2.0399 -0.7399 1.1236 26 1 -0.3635 -1.0259 0.0596 27 1 -0.3634 0.5646 0.8587 28 1 -0.3634 0.4615 -0.9183 29 1 3.0304 -0.3849 -1.5451 30 1 1.3543 -0.8125 -2.0238 31 1 2.4952 -3.5058 -2.2718 32 1 2.3648 -6.6601 -0.3894 33 1 2.3073 -5.9162 -2.0054 34 1 4.6671 -5.4025 -1.7331 35 1 4.0565 -8.2312 -1.1734 36 1 3.9993 -7.4867 -2.7892 37 1 6.5411 -5.6237 -2.3266 38 1 7.6000 -6.8245 -3.1042 39 1 5.9820 -6.5000 -3.7715 40 1 6.2291 -8.4020 0.0477 41 1 7.7205 -7.7795 -0.6979 42 1 6.4684 -6.6474 -0.1326 43 1 8.6534 -10.7856 -3.7475 44 1 2.6313 -5.2913 1.5981 45 1 2.2989 -3.0909 2.6335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922177105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:45 Heat of formation + Delta-G solvation = -17.752940 kcal Electronic energy + Delta-G solvation = -22830.564518 eV Core-core repulsion = 19619.783305 eV Total energy + Delta-G solvation = -3210.781213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.14148 -39.37304 -38.40580 -35.51750 -34.05961 -33.67285 -31.75010 -31.21432 -27.96951 -27.86590 -27.15092 -26.87626 -24.71029 -23.17302 -22.47499 -21.79440 -20.56296 -18.14962 -18.07459 -17.70150 -17.31739 -16.88090 -16.42609 -16.10787 -15.37285 -15.09854 -14.96211 -14.82069 -14.60904 -14.48606 -14.03187 -13.99219 -13.83509 -13.68706 -13.48719 -13.35204 -13.17705 -12.95106 -12.55761 -12.44405 -12.24814 -12.07544 -11.91606 -11.81542 -11.66840 -11.62462 -11.55862 -10.92644 -10.55960 -10.30534 -9.81163 -9.26107 -8.95347 -8.28551 -6.27073 0.35147 0.40370 1.36939 1.39778 1.50375 2.32468 2.36526 2.69935 3.08916 3.44996 3.53862 3.68038 3.92925 3.97918 4.00710 4.21670 4.27153 4.29656 4.42628 4.45482 4.52209 4.59358 4.67389 4.71423 4.76601 4.81544 4.87540 4.92466 4.94605 4.96915 4.98994 5.11157 5.18969 5.22055 5.22824 5.30873 5.33677 5.44297 5.60414 5.68741 5.72099 5.76942 5.87081 6.18362 6.27916 6.36299 6.58541 6.80188 7.38335 8.88640 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.003025 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.173477 B = 9254.518648 C = 9301.044747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 H 0.136 0.864 4 C -0.104 4.104 5 C -0.181 4.181 6 C -0.071 4.071 7 C -0.109 4.109 8 C 0.104 3.896 9 N -0.681 5.681 10 C 0.097 3.903 11 C 0.036 3.964 12 C -0.141 4.141 13 C -0.131 4.131 14 C -0.512 4.512 15 H 0.031 0.969 16 C 0.017 3.983 17 N -0.948 5.948 18 Si 0.943 3.057 19 H -0.286 1.286 20 H -0.317 1.317 21 H -0.214 1.214 22 C -0.069 4.069 23 C -0.150 4.150 24 C 0.085 3.915 25 O -0.322 6.322 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.341 0.659 35 H 0.056 0.944 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.021 0.979 42 H 0.068 0.932 43 H 0.263 0.737 44 H 0.140 0.860 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 23.493 7.316 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 H 0.154 0.846 4 C -0.140 4.140 5 C -0.182 4.182 6 C -0.090 4.090 7 C -0.110 4.110 8 C -0.024 4.024 9 N -0.313 5.313 10 C -0.032 4.032 11 C 0.034 3.966 12 C -0.198 4.198 13 C -0.188 4.188 14 C -0.550 4.550 15 H 0.049 0.951 16 C -0.180 4.180 17 N -0.589 5.589 18 Si 0.774 3.226 19 H -0.214 1.214 20 H -0.247 1.247 21 H -0.138 1.138 22 C -0.088 4.088 23 C -0.169 4.169 24 C 0.040 3.960 25 O -0.237 6.237 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.160 0.840 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.158 0.842 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.278 23.271 8.081 28.473 hybrid contribution 0.597 -0.490 -0.901 1.187 sum -13.681 22.781 7.180 27.527 Atomic orbital electron populations 1.22233 0.93397 1.02489 1.04287 1.23740 0.95450 0.96918 0.82412 0.84605 1.21941 1.03539 0.89760 0.98789 1.20977 1.07019 0.96294 0.93923 1.20358 0.98110 0.90227 1.00272 1.19700 1.02754 0.94710 0.93821 1.20788 0.89022 0.93608 0.98997 1.60591 1.11370 1.03960 1.55383 1.21656 0.95893 0.90227 0.95417 1.18464 0.92805 0.92841 0.92445 1.22200 1.00217 0.98123 0.99252 1.22099 0.97419 1.01150 0.98133 1.21227 0.92213 1.02416 1.39145 0.95091 1.25780 1.01717 0.95745 0.94751 1.70107 1.21629 1.29663 1.37452 0.86355 0.77042 0.82267 0.76976 1.21395 1.24651 1.13808 1.20908 0.96592 0.96825 0.94456 1.20449 1.06531 0.89554 1.00330 1.19780 0.97516 0.85225 0.93450 1.86863 1.80426 1.16693 1.39693 0.93493 0.91113 0.88504 0.88410 0.87365 0.84982 0.90156 0.94259 0.84027 0.92581 0.96732 0.92268 0.94340 0.93995 0.94147 0.96118 0.91269 0.92860 0.84201 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.51 71.98 0.68 -1.19 16 2 C 0.07 0.96 4.32 31.17 0.13 1.10 16 3 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.10 -1.47 6.65 30.73 0.20 -1.26 16 5 C -0.18 -3.80 6.27 -19.53 -0.12 -3.92 16 6 C -0.07 -1.55 9.70 22.18 0.22 -1.33 16 7 C -0.11 -2.57 5.40 -19.82 -0.11 -2.68 16 8 C 0.10 2.64 5.82 85.56 0.50 3.13 16 9 N -0.68 -20.68 5.71 -517.90 -2.96 -23.63 16 10 C 0.10 3.66 4.57 86.30 0.39 4.06 16 11 C 0.04 1.56 0.57 -52.93 -0.03 1.53 16 12 C -0.14 -5.67 7.24 71.98 0.52 -5.15 16 13 C -0.13 -5.50 7.54 71.98 0.54 -4.95 16 14 C -0.51 -28.65 8.62 25.60 0.22 -28.43 16 15 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 16 C 0.02 0.99 5.32 84.65 0.45 1.44 16 17 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 18 Si 0.94 45.53 22.79 68.60 1.56 47.09 16 19 H -0.29 -13.68 7.10 99.48 0.71 -12.98 16 20 H -0.32 -15.59 7.11 99.48 0.71 -14.89 16 21 H -0.21 -9.14 4.65 99.48 0.46 -8.68 16 22 C -0.07 -1.59 9.68 22.21 0.21 -1.37 16 23 C -0.15 -3.41 10.06 22.45 0.23 -3.19 16 24 C 0.09 1.99 6.91 22.68 0.16 2.14 16 25 O -0.32 -7.04 10.82 -95.08 -1.03 -8.07 16 26 H 0.05 0.69 8.07 -2.39 -0.02 0.67 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.13 7.92 -2.39 -0.02 1.11 16 31 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 33 H 0.04 0.95 8.09 -2.39 -0.02 0.94 16 34 H 0.34 9.99 6.99 -89.70 -0.63 9.36 16 35 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 37 H 0.06 2.01 7.06 -2.39 -0.02 2.00 16 38 H 0.04 1.66 4.30 -2.39 -0.01 1.65 16 39 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 40 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.02 0.90 2.26 -2.38 -0.01 0.89 16 42 H 0.07 2.55 7.60 -2.39 -0.02 2.53 16 43 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -67.27 346.26 2.18 -65.08 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.10 Total: 19.12 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 4.20 Total: -40.06 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.66 Total: -83.17 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.03 Total: -8.07 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.56 Total: 47.09 kcal Total: -67.27 2.18 -65.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922177105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.332 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds