Wall clock time and date at job start Tue Mar 31 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46819 * 2 1 4 4 N 1.46900 * 109.47131 * 174.96120 * 3 2 1 5 5 C 1.46906 * 110.99425 * 65.12452 * 4 3 2 6 6 C 1.53002 * 109.46814 * 77.12311 * 5 4 3 7 7 H 1.09000 * 109.47461 * 53.10363 * 6 5 4 8 8 O 1.42893 * 109.47367 * 293.10065 * 6 5 4 9 9 C 1.50703 * 109.46857 * 173.10299 * 6 5 4 10 10 H 1.07997 * 120.00286 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00001 * 180.02562 * 9 6 5 12 12 N 1.31507 * 120.00304 * 179.97438 * 11 9 6 13 13 Si 1.86804 * 119.99840 * 359.97438 * 11 9 6 14 14 H 1.48500 * 109.47200 * 90.00139 * 13 11 9 15 15 H 1.48501 * 109.47115 * 210.00198 * 13 11 9 16 16 H 1.48500 * 109.47335 * 330.00141 * 13 11 9 17 17 C 1.46900 * 111.00253 * 301.17458 * 4 3 2 18 18 H 1.09005 * 110.26472 * 63.84046 * 17 4 3 19 19 C 1.54342 * 110.30005 * 301.66400 * 17 4 3 20 20 C 1.54348 * 102.39196 * 267.42177 * 19 17 4 21 21 C 1.51373 * 105.17089 * 333.65569 * 20 19 17 22 22 C 1.38496 * 130.39077 * 197.18610 * 21 20 19 23 23 C 1.38108 * 120.21132 * 180.02562 * 22 21 20 24 24 C 1.38246 * 119.93700 * 359.97438 * 23 22 21 25 25 C 1.38102 * 119.93651 * 0.02562 * 24 23 22 26 26 C 1.38217 * 109.75430 * 17.18518 * 21 20 19 27 27 H 1.08994 * 109.47308 * 60.00131 * 1 2 3 28 28 H 1.09005 * 109.46514 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46903 * 299.99885 * 1 2 3 30 30 H 1.09003 * 109.47022 * 119.99970 * 2 1 3 31 31 H 1.08993 * 109.47033 * 240.00308 * 2 1 3 32 32 H 1.08997 * 109.47231 * 294.96780 * 3 2 1 33 33 H 1.09001 * 109.46939 * 54.96643 * 3 2 1 34 34 H 1.08997 * 109.46710 * 197.11955 * 5 4 3 35 35 H 1.08994 * 109.47574 * 317.12218 * 5 4 3 36 36 H 0.96705 * 114.00346 * 304.25785 * 8 6 5 37 37 H 0.97004 * 120.00203 * 179.97438 * 12 11 9 38 38 H 1.08995 * 110.82748 * 25.64837 * 19 17 4 39 39 H 1.08999 * 110.82286 * 149.19915 * 19 17 4 40 40 H 1.09000 * 110.30427 * 214.73289 * 20 19 17 41 41 H 1.08999 * 110.38404 * 92.62214 * 20 19 17 42 42 H 1.07991 * 119.89397 * 359.97438 * 22 21 20 43 43 H 1.08004 * 120.02750 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.03551 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.89508 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5039 1.4444 0.1216 5 6 4.1308 0.8319 -1.0574 6 6 4.1084 1.8254 -2.2208 7 1 4.5512 2.7689 -1.9015 8 8 2.7579 2.0479 -2.6312 9 6 4.8984 1.2649 -3.3752 10 1 5.3698 0.2972 -3.2878 11 6 5.0204 1.9881 -4.5428 12 7 5.7102 1.4993 -5.5500 13 14 4.2058 3.6623 -4.6938 14 1 5.1483 4.7146 -4.2359 15 1 3.8398 3.9086 -6.1118 16 1 2.9816 3.6948 -3.8539 17 6 3.9306 0.7698 1.3549 18 1 3.6478 -0.2825 1.3268 19 6 3.3082 1.4613 2.5863 20 6 4.3980 2.4810 2.9797 21 6 5.6955 1.8901 2.4713 22 6 7.0074 2.1891 2.7997 23 6 8.0471 1.5085 2.1970 24 6 7.7785 0.5251 1.2632 25 6 6.4710 0.2255 0.9345 26 6 5.4269 0.9069 1.5378 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.7521 1.9297 -0.9316 33 1 1.6048 1.9817 0.8415 34 1 5.1625 0.5684 -0.8245 35 1 3.5803 -0.0665 -1.3362 36 1 2.2804 1.2407 -2.8672 37 1 5.7957 2.0079 -6.3716 38 1 2.3814 1.9686 2.3187 39 1 3.1405 0.7441 3.3899 40 1 4.4341 2.5971 4.0629 41 1 4.2079 3.4427 2.5030 42 1 7.2180 2.9575 3.5287 43 1 9.0690 1.7444 2.4550 44 1 8.5903 -0.0084 0.7913 45 1 6.2620 -0.5426 0.2046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929383611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:30 Heat of formation + Delta-G solvation = -35.809416 kcal Electronic energy + Delta-G solvation = -24239.097265 eV Core-core repulsion = 21027.533065 eV Total energy + Delta-G solvation = -3211.564200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46649 -39.25693 -37.40120 -35.57157 -34.41649 -33.65354 -31.82112 -30.69335 -29.65893 -27.71399 -27.07395 -24.80344 -23.52229 -23.11614 -22.06184 -21.50834 -20.34394 -19.24275 -17.40982 -17.22560 -16.73836 -16.56870 -16.46773 -16.18551 -15.80191 -15.41761 -15.13910 -14.75108 -14.55755 -14.38493 -14.09128 -13.81381 -13.56607 -13.44024 -13.17526 -12.86278 -12.81043 -12.58626 -12.51211 -12.23027 -12.18319 -12.08419 -11.88071 -11.77917 -11.74585 -11.50064 -11.31615 -11.03503 -10.79661 -10.00497 -9.69724 -9.45622 -8.91825 -8.34901 -6.48445 0.47436 0.51679 1.39797 1.43708 1.74542 2.44409 2.78905 3.03441 3.23265 3.56538 3.62179 4.02220 4.07261 4.14711 4.18445 4.19589 4.21040 4.27040 4.39330 4.44571 4.49481 4.54901 4.66059 4.74078 4.80702 4.84742 4.91601 4.97651 5.02863 5.08060 5.13747 5.18517 5.26063 5.27576 5.34390 5.38430 5.45467 5.50665 5.57754 5.64118 5.66536 5.79974 6.07746 6.15599 6.27287 6.40126 6.63356 7.17921 7.35211 8.79413 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.006617 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.943252 B = 4230.514076 C = 5659.444723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.039 3.961 4 N -0.526 5.526 5 C 0.044 3.956 6 C 0.218 3.782 7 H 0.043 0.957 8 O -0.571 6.571 9 C -0.561 4.561 10 H 0.033 0.967 11 C 0.029 3.971 12 N -0.941 5.941 13 Si 0.939 3.061 14 H -0.291 1.291 15 H -0.297 1.297 16 H -0.201 1.201 17 C 0.116 3.884 18 H 0.043 0.957 19 C -0.109 4.109 20 C -0.070 4.070 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.105 4.105 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.362 0.638 37 H 0.266 0.734 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -0.296 20.238 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C -0.088 4.088 4 N -0.249 5.249 5 C -0.084 4.084 6 C 0.160 3.840 7 H 0.061 0.939 8 O -0.378 6.378 9 C -0.599 4.599 10 H 0.051 0.949 11 C -0.170 4.170 12 N -0.580 5.580 13 Si 0.763 3.237 14 H -0.218 1.218 15 H -0.224 1.224 16 H -0.123 1.123 17 C 0.008 3.992 18 H 0.061 0.939 19 C -0.146 4.146 20 C -0.107 4.107 21 C -0.096 4.096 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.139 4.139 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.209 0.791 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.150 0.850 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.345 0.834 20.241 20.951 hybrid contribution 0.187 -1.252 -1.304 1.818 sum -5.158 -0.419 18.937 19.631 Atomic orbital electron populations 1.21618 0.93999 1.01805 1.02297 1.22104 0.97773 0.98658 1.01067 1.22685 0.85884 0.95920 1.04282 1.62243 1.08207 1.53807 1.00605 1.22637 0.99116 0.95765 0.90864 1.19389 0.80208 0.94604 0.89827 0.93927 1.86618 1.26527 1.36451 1.88209 1.21820 1.33572 1.04858 0.99661 0.94912 1.25823 0.94159 1.02056 0.94954 1.70085 1.42149 1.40434 1.05362 0.85988 0.82082 0.78419 0.77180 1.21786 1.22425 1.12310 1.21182 0.90087 0.96328 0.91569 0.93946 1.22443 0.98704 0.98224 0.95267 1.20990 0.89578 0.98652 1.01455 1.20931 0.95660 0.95968 0.97003 1.20935 0.91098 1.00631 1.01099 1.21341 1.00160 0.95890 0.96514 1.21257 0.96060 0.99277 0.98881 1.20842 0.93259 1.00515 0.99325 1.20636 0.95024 0.97501 0.97380 0.92752 0.92568 0.91628 0.92098 0.93681 0.89065 0.89590 0.91598 0.94962 0.79093 0.92561 0.88897 0.89306 0.88760 0.90455 0.83939 0.83532 0.85047 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.91 71.98 0.71 -2.03 16 2 C -0.16 -3.86 5.32 30.60 0.16 -3.69 16 3 C 0.04 1.09 4.87 86.30 0.42 1.51 16 4 N -0.53 -17.18 4.51 -871.44 -3.93 -21.11 16 5 C 0.04 1.76 4.45 86.30 0.38 2.14 16 6 C 0.22 10.27 2.53 29.85 0.08 10.34 16 7 H 0.04 2.19 7.57 -2.39 -0.02 2.17 16 8 O -0.57 -24.53 7.40 -148.98 -1.10 -25.64 16 9 C -0.56 -32.19 9.36 25.60 0.24 -31.95 16 10 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 11 C 0.03 1.74 5.47 84.66 0.46 2.21 16 12 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 13 Si 0.94 46.49 26.99 68.60 1.85 48.34 16 14 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 15 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 16 H -0.20 -9.40 5.31 99.48 0.53 -8.87 16 17 C 0.12 3.27 2.04 44.84 0.09 3.36 16 18 H 0.04 1.22 6.44 -2.38 -0.02 1.20 16 19 C -0.11 -2.30 6.56 31.51 0.21 -2.09 16 20 C -0.07 -1.50 6.77 30.52 0.21 -1.30 16 21 C -0.10 -2.56 6.14 -19.59 -0.12 -2.68 16 22 C -0.12 -2.92 10.04 22.30 0.22 -2.69 16 23 C -0.12 -3.00 10.05 22.24 0.22 -2.77 16 24 C -0.14 -3.93 10.05 22.24 0.22 -3.70 16 25 C -0.12 -3.94 8.46 22.30 0.19 -3.75 16 26 C -0.10 -3.24 5.19 -19.59 -0.10 -3.34 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.44 6.21 -2.39 -0.01 1.42 16 31 H 0.04 1.28 6.45 -2.39 -0.02 1.27 16 32 H 0.09 2.90 5.26 -2.39 -0.01 2.89 16 33 H 0.09 2.03 5.95 -2.39 -0.01 2.02 16 34 H 0.07 2.81 4.48 -2.39 -0.01 2.80 16 35 H 0.03 1.27 5.95 -2.39 -0.01 1.26 16 36 H 0.36 13.85 8.94 -74.05 -0.66 13.19 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.09 1.81 5.66 -2.39 -0.01 1.80 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.14 2.61 8.06 -2.92 -0.02 2.59 16 43 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.10 3.56 7.16 -2.91 -0.02 3.54 16 Total: -1.00 -68.30 338.98 0.87 -67.42 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.15 Total: 30.66 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.60 Total: -40.45 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.63 Total: -80.34 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.10 Total: -25.64 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.85 Total: 48.34 kcal Total: -68.30 0.87 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929383611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.615 kcal (2) G-P(sol) polarization free energy of solvation -68.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds