Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47719 * 2 1 4 4 N 1.46898 * 109.47641 * 174.87586 * 3 2 1 5 5 C 1.46900 * 111.00005 * 199.71069 * 4 3 2 6 6 C 1.50701 * 109.46837 * 66.04919 * 5 4 3 7 7 H 1.07995 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99860 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00002 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47169 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47334 * 119.99682 * 10 8 6 13 13 H 1.48498 * 109.47230 * 239.99854 * 10 8 6 14 14 C 1.46900 * 110.99585 * 75.75952 * 4 3 2 15 15 C 1.50697 * 109.47100 * 199.76290 * 14 4 3 16 16 C 1.38294 * 120.00892 * 264.44241 * 15 14 4 17 17 C 1.37969 * 119.96189 * 180.02562 * 16 15 14 18 18 C 1.39147 * 120.21497 * 0.04435 * 17 16 15 19 19 C 1.38366 * 119.69309 * 359.81446 * 18 17 16 20 20 C 1.38102 * 120.01362 * 84.41388 * 15 14 4 21 21 C 1.50768 * 121.41194 * 180.30808 * 19 18 17 22 22 C 1.53070 * 109.69150 * 342.21684 * 21 19 18 23 23 C 1.53408 * 108.29082 * 48.18571 * 22 21 19 24 24 O 1.35844 * 118.49981 * 179.75737 * 18 17 16 25 25 H 1.09004 * 109.47510 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47015 * 299.99528 * 1 2 3 27 27 H 1.08996 * 109.47557 * 59.99903 * 1 2 3 28 28 H 1.09006 * 109.47264 * 239.99781 * 2 1 3 29 29 H 1.09011 * 109.47229 * 120.00467 * 2 1 3 30 30 H 1.09001 * 109.46905 * 54.87349 * 3 2 1 31 31 H 1.09002 * 109.47071 * 294.88506 * 3 2 1 32 32 H 1.09004 * 109.46958 * 186.04828 * 5 4 3 33 33 H 1.08998 * 109.47138 * 306.04900 * 5 4 3 34 34 H 0.97001 * 119.99741 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47026 * 79.76042 * 14 4 3 36 36 H 1.09003 * 109.47224 * 319.76177 * 14 4 3 37 37 H 1.08002 * 120.02140 * 0.05818 * 16 15 14 38 38 H 1.08001 * 119.89237 * 179.97438 * 17 16 15 39 39 H 1.08003 * 119.83715 * 0.02677 * 20 15 14 40 40 H 1.08997 * 109.44222 * 102.25908 * 21 19 18 41 41 H 1.09002 * 109.43670 * 222.14217 * 21 19 18 42 42 H 1.08998 * 109.66430 * 288.50513 * 22 21 19 43 43 H 1.08998 * 109.73188 * 167.90310 * 22 21 19 44 44 H 1.08999 * 109.67850 * 175.59089 * 23 22 21 45 45 H 1.08998 * 109.67975 * 55.07181 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5038 1.4442 0.1237 5 6 3.9911 2.7492 0.5903 6 6 3.5120 2.9899 1.9987 7 1 2.9066 2.2476 2.4974 8 6 3.8476 4.1574 2.6509 9 7 4.5862 5.0607 2.0441 10 14 3.2544 4.4555 4.3969 11 1 2.4475 3.2943 4.8507 12 1 4.4247 4.6256 5.2951 13 1 2.4199 5.6833 4.4333 14 6 4.1398 1.0681 -1.1460 15 6 5.5517 0.6107 -0.8844 16 6 6.6023 1.5004 -1.0150 17 6 7.8946 1.0805 -0.7758 18 6 8.1454 -0.2367 -0.4041 19 6 7.0919 -1.1239 -0.2714 20 6 5.7968 -0.6968 -0.5137 21 6 7.3186 -2.5577 0.1359 22 6 8.7888 -2.9277 -0.0757 23 6 9.6568 -1.8241 0.5422 24 8 9.4314 -0.6139 -0.1821 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 1.6037 1.9821 0.8405 31 1 1.7535 1.9291 -0.9323 32 1 5.0809 2.7582 0.5706 33 1 3.6094 3.5341 -0.0625 34 1 4.8219 5.8822 2.5028 35 1 4.1547 1.9293 -1.8140 36 1 3.5756 0.2586 -1.6092 37 1 6.4114 2.5235 -1.3035 38 1 8.7143 1.7762 -0.8785 39 1 4.9745 -1.3898 -0.4124 40 1 7.0619 -2.6809 1.1880 41 1 6.6895 -3.2105 -0.4693 42 1 8.9976 -3.0053 -1.1427 43 1 9.0025 -3.8792 0.4112 44 1 10.7084 -2.1025 0.4736 45 1 9.3818 -1.6829 1.5875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138716300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -29.771720 kcal Electronic energy + Delta-G solvation = -23264.434116 eV Core-core repulsion = 20053.131730 eV Total energy + Delta-G solvation = -3211.302386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41462 -38.01437 -36.38720 -34.18324 -33.08722 -32.36389 -30.51666 -30.12916 -27.28217 -26.32088 -25.12118 -24.03345 -22.81518 -22.07622 -21.15505 -19.96477 -19.16374 -17.50925 -16.57215 -16.21740 -15.69213 -15.09575 -14.58969 -14.51839 -14.31339 -14.15581 -13.87177 -13.61032 -13.40221 -13.07426 -12.98167 -12.86023 -12.33197 -12.03250 -11.94824 -11.58583 -11.51355 -11.19388 -11.12481 -10.96219 -10.79472 -10.72608 -10.60300 -10.55990 -10.26945 -10.18202 -9.99047 -9.65988 -9.11884 -8.42772 -8.33997 -7.68335 -7.18271 -5.98856 -3.98928 1.72781 1.81760 3.32667 3.40203 3.44783 3.46726 4.08450 4.46759 4.64370 4.72168 4.80449 5.05458 5.07017 5.22125 5.36559 5.40291 5.43866 5.45447 5.51130 5.57800 5.59990 5.66506 5.78416 5.83824 5.90300 5.96814 6.01207 6.05401 6.12492 6.21416 6.29029 6.30188 6.45770 6.47314 6.64806 6.73187 6.79773 6.86828 7.12931 7.16788 7.38329 7.40107 7.72561 7.85587 8.16115 8.27467 8.60282 9.08816 9.64624 11.12152 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.004937 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.287210 B = 5670.570738 C = 6902.848587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.061 3.939 4 N -0.531 5.531 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.093 3.907 15 C -0.086 4.086 16 C -0.071 4.071 17 C -0.148 4.148 18 C 0.119 3.881 19 C -0.167 4.167 20 C -0.065 4.065 21 C -0.074 4.074 22 C -0.158 4.158 23 C 0.061 3.939 24 O -0.321 6.321 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.037 0.963 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 -14.582 -6.537 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.067 4.067 4 N -0.255 5.255 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.035 4.035 15 C -0.086 4.086 16 C -0.089 4.089 17 C -0.166 4.166 18 C 0.075 3.925 19 C -0.168 4.168 20 C -0.083 4.083 21 C -0.111 4.111 22 C -0.196 4.196 23 C -0.014 4.014 24 O -0.235 6.235 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.485 -14.653 -6.207 16.534 hybrid contribution -0.550 0.807 0.565 1.128 sum 3.936 -13.846 -5.643 15.461 Atomic orbital electron populations 1.21730 0.96606 1.00729 1.01602 1.21544 0.94426 0.98026 1.01628 1.22045 0.89069 0.95279 1.00350 1.62125 1.04216 1.34379 1.24822 1.19794 0.96426 0.82265 0.94976 1.21198 1.31950 1.02445 0.98607 0.91917 1.24965 0.95396 0.96123 0.98077 1.69966 1.37717 1.08762 1.37350 0.86504 0.78501 0.78004 0.84793 1.19699 1.21080 1.21164 1.20970 0.91307 0.98839 0.92362 1.19681 0.95190 0.93346 1.00423 1.20904 0.91259 0.99234 0.97514 1.20490 0.97471 0.93004 1.05647 1.18584 0.82635 0.92891 0.98408 1.19656 0.93483 0.95556 1.08071 1.20629 0.94736 0.95717 0.97255 1.20410 0.96068 0.92755 1.01902 1.22215 0.95948 0.99088 1.02305 1.22888 1.00364 0.83010 0.95138 1.85956 1.23838 1.41743 1.71994 0.93392 0.92670 0.93303 0.93188 0.91472 0.89567 0.96473 0.94488 0.99439 0.93079 0.94929 0.91448 0.85542 0.85711 0.86215 0.90678 0.90417 0.90696 0.90165 0.88039 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.15 0.37 -1.60 16 2 C -0.12 -1.84 5.98 -26.74 -0.16 -2.00 16 3 C 0.06 1.17 4.79 -3.83 -0.02 1.15 16 4 N -0.53 -11.34 4.35 -237.52 -1.03 -12.37 16 5 C 0.19 4.94 4.54 -4.98 -0.02 4.92 16 6 C -0.50 -14.18 8.23 -34.44 -0.28 -14.47 16 7 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.09 1.70 4.95 -4.98 -0.02 1.67 16 15 C -0.09 -1.54 5.03 -104.65 -0.53 -2.07 16 16 C -0.07 -1.28 8.40 -39.66 -0.33 -1.61 16 17 C -0.15 -2.54 9.94 -39.34 -0.39 -2.93 16 18 C 0.12 1.97 6.47 -39.20 -0.25 1.72 16 19 C -0.17 -2.57 5.75 -104.44 -0.60 -3.17 16 20 C -0.06 -1.06 9.34 -39.53 -0.37 -1.43 16 21 C -0.07 -0.87 5.86 -27.81 -0.16 -1.03 16 22 C -0.16 -1.53 6.20 -26.48 -0.16 -1.70 16 23 C 0.06 0.67 7.03 37.37 0.26 0.93 16 24 O -0.32 -4.83 10.27 -19.25 -0.20 -5.03 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.72 6.89 -51.93 -0.36 0.36 16 29 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 30 H 0.09 1.85 6.58 -51.93 -0.34 1.51 16 31 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 32 H 0.04 1.03 6.33 -51.93 -0.33 0.70 16 33 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 36 H 0.07 1.07 6.54 -51.93 -0.34 0.73 16 37 H 0.13 2.29 7.99 -52.49 -0.42 1.87 16 38 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -30.99 358.14 -10.52 -41.51 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.63 Total: -0.13 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.78 Total: -20.13 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.30 Total: -38.47 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.20 Total: -5.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.99 -10.52 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138716300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.733 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds