Wall clock time and date at job start Tue Mar 31 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00000 * 2 1 4 4 O 1.42895 * 109.46707 * 135.00601 * 3 2 1 5 5 C 1.35899 * 116.99788 * 180.02562 * 4 3 2 6 6 C 1.38750 * 120.05781 * 0.24666 * 5 4 3 7 7 C 1.38123 * 119.94778 * 180.31830 * 6 5 4 8 8 C 1.38295 * 120.05189 * 359.68392 * 7 6 5 9 9 C 1.38237 * 120.11219 * 0.02562 * 8 7 6 10 10 C 1.38171 * 120.05672 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.02618 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47392 * 254.35557 * 11 10 9 13 13 C 1.46895 * 111.00232 * 199.90404 * 12 11 10 14 14 C 1.50707 * 109.47120 * 169.99669 * 13 12 11 15 15 H 1.07997 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00051 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00036 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47032 * 90.00250 * 18 16 14 20 20 H 1.48502 * 109.46982 * 209.99963 * 18 16 14 21 21 H 1.48495 * 109.47284 * 329.99833 * 18 16 14 22 22 C 1.46900 * 110.99949 * 75.94624 * 12 11 10 23 23 C 1.53004 * 109.46881 * 68.28362 * 22 12 11 24 24 C 1.52997 * 109.47075 * 183.80590 * 23 22 12 25 25 H 1.08004 * 120.00489 * 179.97438 * 1 2 3 26 26 H 1.08009 * 120.00126 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99750 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46762 * 15.00685 * 3 2 1 29 29 H 1.09002 * 109.46784 * 255.00396 * 3 2 1 30 30 H 1.08004 * 120.02800 * 0.02877 * 6 5 4 31 31 H 1.07999 * 119.97600 * 179.70914 * 7 6 5 32 32 H 1.07997 * 119.94124 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.97192 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46828 * 134.35876 * 11 10 9 35 35 H 1.08996 * 109.47796 * 14.35753 * 11 10 9 36 36 H 1.08990 * 109.47397 * 289.99863 * 13 12 11 37 37 H 1.09003 * 109.46946 * 50.00030 * 13 12 11 38 38 H 0.96996 * 119.99915 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47329 * 188.27947 * 22 12 11 40 40 H 1.09003 * 109.47439 * 308.28160 * 22 12 11 41 41 H 1.08999 * 109.47153 * 303.80979 * 23 22 12 42 42 H 1.09003 * 109.46962 * 63.80917 * 23 22 12 43 43 H 1.08999 * 109.46983 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.47448 * 300.00209 * 24 23 22 45 45 H 1.09003 * 109.46959 * 60.00324 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9091 2.3452 1.0789 6 6 3.6554 3.4689 0.3055 7 6 4.4561 4.5874 0.4310 8 6 5.5059 4.5901 1.3313 9 6 5.7570 3.4740 2.1072 10 6 4.9596 2.3523 1.9847 11 6 5.2343 1.1357 2.8305 12 7 5.8475 0.0903 2.0003 13 6 5.7026 -1.2310 2.6254 14 6 6.1172 -2.2985 1.6457 15 1 6.4550 -2.0229 0.6576 16 6 6.0662 -3.6270 2.0111 17 7 5.6553 -3.9627 3.2145 18 14 6.5808 -4.9500 0.7970 19 1 8.0331 -5.2214 0.9467 20 1 5.8146 -6.1934 1.0656 21 1 6.3038 -4.4871 -0.5865 22 6 7.2594 0.3931 1.7304 23 6 8.0627 0.2775 3.0275 24 6 9.5142 0.6846 2.7664 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5401 0.9354 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2661 29 1 2.4754 1.4868 -0.9927 30 1 2.8354 3.4674 -0.3974 31 1 4.2620 5.4606 -0.1740 32 1 6.1305 5.4658 1.4283 33 1 6.5777 3.4784 2.8093 34 1 4.2985 0.7651 3.2487 35 1 5.9139 1.4018 3.6401 36 1 6.3353 -1.2853 3.5112 37 1 4.6622 -1.3852 2.9120 38 1 5.6198 -4.8973 3.4717 39 1 7.6490 -0.3137 0.9977 40 1 7.3453 1.4067 1.3388 41 1 7.6310 0.9351 3.7820 42 1 8.0325 -0.7524 3.3830 43 1 10.0863 0.6027 3.6906 44 1 9.9459 0.0270 2.0119 45 1 9.5444 1.7146 2.4109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139029928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:43 Heat of formation + Delta-G solvation = 7.977426 kcal Electronic energy + Delta-G solvation = -23504.278548 eV Core-core repulsion = 20294.613087 eV Total energy + Delta-G solvation = -3209.665460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02079 -37.69094 -36.83817 -33.93163 -32.70522 -32.47446 -30.81485 -29.67874 -27.10327 -26.40099 -25.94771 -23.76726 -22.07079 -21.97868 -21.28848 -19.76621 -19.08011 -17.74061 -16.25691 -16.09231 -15.65521 -15.40014 -15.05617 -14.59130 -14.45460 -14.18382 -14.06079 -13.53434 -13.24971 -13.07017 -12.74285 -12.50462 -12.28153 -12.12948 -11.70134 -11.33496 -11.23268 -11.05354 -11.00638 -10.90962 -10.84923 -10.76649 -10.64141 -10.51805 -10.33930 -9.81483 -9.61370 -9.42400 -9.11096 -8.63869 -8.35248 -7.81919 -6.99073 -5.94736 -3.94426 1.54526 1.71158 2.15954 3.35140 3.41397 3.46000 3.65475 3.99371 4.49592 4.85862 4.98478 5.03406 5.12138 5.18439 5.31006 5.35992 5.41526 5.46079 5.52115 5.60197 5.63052 5.67871 5.83043 5.92635 5.94318 5.98987 6.12088 6.18931 6.35111 6.42599 6.50825 6.55940 6.57762 6.64557 6.65656 6.68414 6.77569 6.88127 7.04283 7.07132 7.45590 7.51395 7.76651 7.90757 8.21988 8.35892 8.67933 9.13347 9.68780 11.16031 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.006142 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.355060 B = 4557.847345 C = 6570.680432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.087 3.913 4 O -0.283 6.283 5 C 0.155 3.845 6 C -0.219 4.219 7 C -0.090 4.090 8 C -0.165 4.165 9 C -0.080 4.080 10 C -0.093 4.093 11 C 0.096 3.904 12 N -0.522 5.522 13 C 0.192 3.808 14 C -0.497 4.497 15 H 0.060 0.940 16 C 0.055 3.945 17 N -0.900 5.900 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.069 3.931 23 C -0.163 4.163 24 C -0.142 4.142 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.035 0.965 36 H -0.002 1.002 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 15.174 -4.172 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.160 4.160 3 C 0.012 3.988 4 O -0.196 6.196 5 C 0.108 3.892 6 C -0.237 4.237 7 C -0.108 4.108 8 C -0.183 4.183 9 C -0.099 4.099 10 C -0.095 4.095 11 C -0.033 4.033 12 N -0.245 5.245 13 C 0.067 3.933 14 C -0.536 4.536 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.721 3.279 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.060 4.060 23 C -0.202 4.202 24 C -0.200 4.200 25 H 0.124 0.876 26 H 0.112 0.888 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.223 14.780 -4.415 15.993 hybrid contribution 0.600 -0.648 -0.032 0.884 sum -3.623 14.132 -4.447 15.252 Atomic orbital electron populations 1.23774 0.95415 1.02047 1.01021 1.22801 0.95558 0.98458 0.99188 1.21764 0.88073 0.96418 0.92535 1.86321 1.41122 1.34852 1.57265 1.18801 0.90870 0.85452 0.94031 1.21180 1.03836 0.94637 1.04088 1.20791 0.94946 0.97229 0.97870 1.20911 0.99603 0.98732 0.99066 1.20888 0.98014 0.92214 0.98756 1.19403 0.94697 0.96562 0.98796 1.20870 0.99592 0.90111 0.92678 1.62281 1.13398 1.02698 1.46100 1.19783 0.96730 0.83211 0.93598 1.21139 1.42584 0.90231 0.99597 0.92132 1.24948 0.95799 0.98581 0.95251 1.69962 1.48024 1.17337 1.18712 0.86581 0.78381 0.81299 0.81652 1.20867 1.21387 1.19897 1.22014 0.88139 0.99657 0.96173 1.22173 0.95232 1.02686 1.00106 1.21658 0.97119 1.00411 1.00812 0.87640 0.88759 0.85520 0.92242 0.91372 0.86048 0.86509 0.86521 0.85960 0.90638 0.94669 0.98454 0.95451 0.93119 0.90654 0.93197 0.93201 0.90277 0.93690 0.92859 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 14.31 29.02 0.42 -1.66 16 2 C -0.14 -1.94 9.89 -36.02 -0.36 -2.30 16 3 C 0.09 1.19 5.15 36.01 0.19 1.38 16 4 O -0.28 -5.03 9.47 -19.42 -0.18 -5.21 16 5 C 0.16 2.58 6.66 -39.22 -0.26 2.32 16 6 C -0.22 -3.01 9.04 -39.43 -0.36 -3.36 16 7 C -0.09 -1.11 10.04 -39.60 -0.40 -1.51 16 8 C -0.16 -2.08 10.04 -39.56 -0.40 -2.47 16 9 C -0.08 -1.15 9.08 -39.61 -0.36 -1.51 16 10 C -0.09 -1.58 4.82 -104.47 -0.50 -2.08 16 11 C 0.10 1.83 4.63 -4.98 -0.02 1.80 16 12 N -0.52 -11.47 4.62 -237.52 -1.10 -12.57 16 13 C 0.19 5.00 4.37 -4.98 -0.02 4.98 16 14 C -0.50 -13.99 8.57 -34.44 -0.30 -14.28 16 15 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.07 1.37 5.01 -3.82 -0.02 1.35 16 23 C -0.16 -3.00 5.19 -26.73 -0.14 -3.14 16 24 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 25 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 26 H 0.09 0.88 7.90 -52.48 -0.41 0.47 16 27 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 29 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 30 H 0.12 1.40 6.30 -52.48 -0.33 1.07 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.58 8.00 -52.49 -0.42 1.16 16 34 H 0.08 1.54 7.62 -51.93 -0.40 1.14 16 35 H 0.04 0.64 5.82 -51.93 -0.30 0.33 16 36 H 0.00 -0.06 5.98 -51.93 -0.31 -0.37 16 37 H 0.03 0.78 7.83 -51.93 -0.41 0.38 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.08 1.63 6.98 -51.93 -0.36 1.27 16 40 H 0.05 0.91 6.99 -51.93 -0.36 0.55 16 41 H 0.05 0.87 6.25 -51.93 -0.32 0.55 16 42 H 0.08 1.72 6.44 -51.93 -0.33 1.38 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -30.63 363.61 -9.56 -40.19 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.21 Total: 2.18 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.26 Total: -20.82 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.36 Total: -38.69 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.18 Total: -5.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.63 -9.56 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139029928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.169 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds