Wall clock time and date at job start Tue Mar 31 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00000 * 2 1 4 4 O 1.42895 * 109.46707 * 135.00601 * 3 2 1 5 5 C 1.35899 * 116.99788 * 180.02562 * 4 3 2 6 6 C 1.38750 * 120.05781 * 0.24666 * 5 4 3 7 7 C 1.38123 * 119.94778 * 180.31830 * 6 5 4 8 8 C 1.38295 * 120.05189 * 359.68392 * 7 6 5 9 9 C 1.38237 * 120.11219 * 0.02562 * 8 7 6 10 10 C 1.38171 * 120.05672 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.02618 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47392 * 254.35557 * 11 10 9 13 13 C 1.46895 * 111.00232 * 199.90404 * 12 11 10 14 14 C 1.50707 * 109.47120 * 169.99669 * 13 12 11 15 15 H 1.07997 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00051 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00036 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47032 * 90.00250 * 18 16 14 20 20 H 1.48502 * 109.46982 * 209.99963 * 18 16 14 21 21 H 1.48495 * 109.47284 * 329.99833 * 18 16 14 22 22 C 1.46900 * 110.99949 * 75.94624 * 12 11 10 23 23 C 1.53004 * 109.46881 * 68.28362 * 22 12 11 24 24 C 1.52997 * 109.47075 * 183.80590 * 23 22 12 25 25 H 1.08004 * 120.00489 * 179.97438 * 1 2 3 26 26 H 1.08009 * 120.00126 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99750 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46762 * 15.00685 * 3 2 1 29 29 H 1.09002 * 109.46784 * 255.00396 * 3 2 1 30 30 H 1.08004 * 120.02800 * 0.02877 * 6 5 4 31 31 H 1.07999 * 119.97600 * 179.70914 * 7 6 5 32 32 H 1.07997 * 119.94124 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.97192 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46828 * 134.35876 * 11 10 9 35 35 H 1.08996 * 109.47796 * 14.35753 * 11 10 9 36 36 H 1.08990 * 109.47397 * 289.99863 * 13 12 11 37 37 H 1.09003 * 109.46946 * 50.00030 * 13 12 11 38 38 H 0.96996 * 119.99915 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47329 * 188.27947 * 22 12 11 40 40 H 1.09003 * 109.47439 * 308.28160 * 22 12 11 41 41 H 1.08999 * 109.47153 * 303.80979 * 23 22 12 42 42 H 1.09003 * 109.46962 * 63.80917 * 23 22 12 43 43 H 1.08999 * 109.46983 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.47448 * 300.00209 * 24 23 22 45 45 H 1.09003 * 109.46959 * 60.00324 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9091 2.3452 1.0789 6 6 3.6554 3.4689 0.3055 7 6 4.4561 4.5874 0.4310 8 6 5.5059 4.5901 1.3313 9 6 5.7570 3.4740 2.1072 10 6 4.9596 2.3523 1.9847 11 6 5.2343 1.1357 2.8305 12 7 5.8475 0.0903 2.0003 13 6 5.7026 -1.2310 2.6254 14 6 6.1172 -2.2985 1.6457 15 1 6.4550 -2.0229 0.6576 16 6 6.0662 -3.6270 2.0111 17 7 5.6553 -3.9627 3.2145 18 14 6.5808 -4.9500 0.7970 19 1 8.0331 -5.2214 0.9467 20 1 5.8146 -6.1934 1.0656 21 1 6.3038 -4.4871 -0.5865 22 6 7.2594 0.3931 1.7304 23 6 8.0627 0.2775 3.0275 24 6 9.5142 0.6846 2.7664 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5401 0.9354 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2661 29 1 2.4754 1.4868 -0.9927 30 1 2.8354 3.4674 -0.3974 31 1 4.2620 5.4606 -0.1740 32 1 6.1305 5.4658 1.4283 33 1 6.5777 3.4784 2.8093 34 1 4.2985 0.7651 3.2487 35 1 5.9139 1.4018 3.6401 36 1 6.3353 -1.2853 3.5112 37 1 4.6622 -1.3852 2.9120 38 1 5.6198 -4.8973 3.4717 39 1 7.6490 -0.3137 0.9977 40 1 7.3453 1.4067 1.3388 41 1 7.6310 0.9351 3.7820 42 1 8.0325 -0.7524 3.3830 43 1 10.0863 0.6027 3.6906 44 1 9.9459 0.0270 2.0119 45 1 9.5444 1.7146 2.4109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139029928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:42 Heat of formation + Delta-G solvation = -9.607147 kcal Electronic energy + Delta-G solvation = -23505.041072 eV Core-core repulsion = 20294.613087 eV Total energy + Delta-G solvation = -3210.427985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18135 -39.15704 -38.15307 -34.96633 -34.82662 -33.85680 -32.26958 -30.77619 -29.02260 -27.55188 -27.32457 -25.54718 -23.73806 -23.07836 -22.55506 -20.98585 -20.54590 -18.87155 -18.34973 -17.33615 -16.86268 -16.82259 -16.56763 -16.16691 -15.98063 -15.38429 -15.28371 -15.08177 -14.80880 -14.20028 -14.16870 -13.85611 -13.55651 -13.42561 -13.23758 -12.91118 -12.74163 -12.66704 -12.58418 -12.34957 -12.26745 -12.17290 -12.06114 -12.02556 -11.81125 -11.53440 -11.33762 -11.14990 -10.58051 -10.41962 -9.73830 -8.95866 -8.77641 -8.16711 -6.25570 0.46127 0.63232 1.16220 1.37995 1.39494 1.50962 2.40515 2.59603 2.88890 3.14997 3.56081 3.84969 3.87295 4.04046 4.10773 4.15341 4.20030 4.27563 4.30648 4.42348 4.46209 4.51860 4.58976 4.61067 4.69180 4.76424 4.86723 4.90813 4.98178 5.06410 5.13757 5.18668 5.19845 5.34920 5.45067 5.50465 5.53568 5.59132 5.63084 5.68044 5.69855 5.70606 6.02770 6.11744 6.46835 6.65187 6.75499 6.90737 7.43012 8.93864 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.006142 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.355060 B = 4557.847345 C = 6570.680432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.180 4.180 3 C 0.087 3.913 4 O -0.323 6.323 5 C 0.129 3.871 6 C -0.219 4.219 7 C -0.082 4.082 8 C -0.159 4.159 9 C -0.082 4.082 10 C -0.124 4.124 11 C 0.105 3.895 12 N -0.531 5.531 13 C 0.212 3.788 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.963 3.037 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.075 3.925 23 C -0.154 4.154 24 C -0.134 4.134 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.043 0.957 36 H -0.023 1.023 37 H -0.012 1.012 38 H 0.262 0.738 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 17.870 -5.811 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.013 3.987 4 O -0.237 6.237 5 C 0.083 3.917 6 C -0.238 4.238 7 C -0.100 4.100 8 C -0.177 4.177 9 C -0.101 4.101 10 C -0.125 4.125 11 C -0.023 4.023 12 N -0.254 5.254 13 C 0.086 3.914 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.576 5.576 18 Si 0.788 3.212 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.053 4.053 23 C -0.193 4.193 24 C -0.192 4.192 25 H 0.133 0.867 26 H 0.140 0.860 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.160 0.840 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.065 0.935 35 H 0.061 0.939 36 H -0.005 1.005 37 H 0.006 0.994 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.814 17.500 -6.060 18.909 hybrid contribution 0.380 -1.391 0.482 1.520 sum -3.434 16.109 -5.579 17.390 Atomic orbital electron populations 1.24045 0.94352 1.03781 0.97031 1.22710 0.96612 0.97541 1.03005 1.21922 0.87669 0.96916 0.92198 1.86273 1.42437 1.36281 1.58660 1.19103 0.91203 0.86256 0.95106 1.21460 1.04650 0.93994 1.03668 1.21275 0.93767 0.97624 0.97343 1.21304 0.99702 0.98873 0.97842 1.21075 0.97812 0.91930 0.99262 1.19309 0.96728 0.96394 1.00054 1.20731 0.98002 0.90383 0.93179 1.62162 1.15205 1.01658 1.46370 1.19347 0.93598 0.85671 0.92751 1.21374 1.42695 0.91268 0.99585 0.92686 1.25829 0.95578 1.00944 0.97096 1.70093 1.48888 1.17992 1.20608 0.85482 0.78401 0.78144 0.79204 1.19699 1.20702 1.19298 1.21967 0.86876 1.00082 0.96414 1.22035 0.97692 1.00381 0.99240 1.21602 0.94371 1.01674 1.01583 0.86702 0.86029 0.88926 0.89782 0.90729 0.83964 0.82857 0.83197 0.84736 0.93471 0.93912 1.00513 0.99355 0.92872 0.92950 0.90808 0.92418 0.94455 0.92280 0.93212 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 14.31 67.79 0.97 -2.36 16 2 C -0.18 -5.16 9.89 25.65 0.25 -4.90 16 3 C 0.09 2.41 5.15 71.24 0.37 2.78 16 4 O -0.32 -12.03 9.47 -92.42 -0.88 -12.91 16 5 C 0.13 4.31 6.66 22.51 0.15 4.46 16 6 C -0.22 -5.53 9.04 22.37 0.20 -5.33 16 7 C -0.08 -1.69 10.04 22.26 0.22 -1.47 16 8 C -0.16 -3.38 10.04 22.28 0.22 -3.16 16 9 C -0.08 -2.20 9.08 22.25 0.20 -2.00 16 10 C -0.12 -4.21 4.82 -19.77 -0.10 -4.30 16 11 C 0.10 4.24 4.63 85.56 0.40 4.63 16 12 N -0.53 -24.72 4.62 -905.37 -4.18 -28.90 16 13 C 0.21 11.95 4.37 85.56 0.37 12.32 16 14 C -0.51 -30.28 8.57 25.60 0.22 -30.06 16 15 H 0.05 3.25 7.10 -2.91 -0.02 3.23 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 18 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.07 3.04 5.01 86.30 0.43 3.47 16 23 C -0.15 -5.79 5.19 30.59 0.16 -5.63 16 24 C -0.13 -3.88 9.91 71.98 0.71 -3.17 16 25 H 0.11 2.21 8.06 -2.91 -0.02 2.19 16 26 H 0.12 1.95 7.90 -2.91 -0.02 1.93 16 27 H 0.09 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.08 1.82 7.37 -2.39 -0.02 1.81 16 29 H 0.07 1.87 7.68 -2.39 -0.02 1.85 16 30 H 0.14 2.88 6.30 -2.91 -0.02 2.86 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.13 3.15 8.00 -2.91 -0.02 3.13 16 34 H 0.05 2.11 7.62 -2.39 -0.02 2.09 16 35 H 0.04 1.61 5.82 -2.39 -0.01 1.60 16 36 H -0.02 -1.34 5.98 -2.39 -0.01 -1.36 16 37 H -0.01 -0.73 7.83 -2.39 -0.02 -0.75 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.05 2.35 6.98 -2.39 -0.02 2.33 16 40 H 0.07 2.64 6.99 -2.39 -0.02 2.63 16 41 H 0.06 2.04 6.25 -2.39 -0.01 2.03 16 42 H 0.04 1.70 6.44 -2.39 -0.02 1.69 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -71.18 363.61 3.45 -67.72 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.95 Total: 17.94 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 5.25 Total: -34.08 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -3.90 Total: -86.73 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.88 Total: -12.91 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -71.18 3.45 -67.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139029928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.118 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds