Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46928 * 2 1 4 4 N 1.46905 * 109.47120 * 182.18899 * 3 2 1 5 5 C 1.46898 * 110.99770 * 74.45448 * 4 3 2 6 6 C 1.50699 * 109.47308 * 68.34743 * 5 4 3 7 7 H 1.08007 * 119.99786 * 356.39196 * 6 5 4 8 8 C 1.37876 * 120.00270 * 176.38657 * 6 5 4 9 9 N 1.31517 * 119.99974 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99869 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47245 * 269.99955 * 10 8 6 12 12 H 1.48504 * 109.47009 * 149.99679 * 10 8 6 13 13 H 1.48494 * 109.47083 * 30.00016 * 10 8 6 14 14 C 1.46900 * 110.99790 * 198.40697 * 4 3 2 15 15 H 1.08994 * 110.73220 * 299.19022 * 14 4 3 16 16 C 1.54340 * 110.81921 * 62.59635 * 14 4 3 17 17 C 1.51924 * 104.92047 * 91.92615 * 16 14 4 18 18 C 1.38543 * 130.27240 * 197.18865 * 17 16 14 19 19 C 1.38011 * 120.28777 * 180.02562 * 18 17 16 20 20 C 1.38746 * 119.87741 * 359.97438 * 19 18 17 21 21 O 1.35909 * 120.09072 * 179.97438 * 20 19 18 22 22 C 1.42893 * 116.99819 * 0.02562 * 21 20 19 23 23 C 1.38600 * 119.81783 * 359.97438 * 20 19 18 24 24 C 1.38260 * 109.78562 * 17.21101 * 17 16 14 25 25 C 1.51377 * 109.75907 * 359.97438 * 24 17 16 26 26 H 1.08995 * 109.47246 * 60.00293 * 1 2 3 27 27 H 1.09006 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47333 * 300.00072 * 1 2 3 29 29 H 1.08997 * 109.47333 * 239.99928 * 2 1 3 30 30 H 1.09008 * 109.46667 * 119.99576 * 2 1 3 31 31 H 1.09003 * 109.47352 * 62.19002 * 3 2 1 32 32 H 1.09003 * 109.47018 * 302.19083 * 3 2 1 33 33 H 1.08998 * 109.47465 * 308.34803 * 5 4 3 34 34 H 1.08998 * 109.46972 * 188.34354 * 5 4 3 35 35 H 0.97002 * 119.99671 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.29950 * 210.77901 * 16 14 4 37 37 H 1.09001 * 110.30700 * 332.92954 * 16 14 4 38 38 H 1.07996 * 119.85770 * 0.02562 * 18 17 16 39 39 H 1.07995 * 120.05905 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47163 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47457 * 300.00228 * 22 21 20 42 42 H 1.09006 * 109.47281 * 60.00116 * 22 21 20 43 43 H 1.08002 * 119.91051 * 179.97438 * 23 20 19 44 44 H 1.09002 * 110.30269 * 223.87396 * 25 24 17 45 45 H 1.08996 * 110.30362 * 101.72443 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5081 1.4429 -0.0529 5 6 3.9864 1.0923 -1.3968 6 6 3.6419 2.2009 -2.3578 7 1 3.0690 3.0512 -2.0182 8 6 4.0581 2.1297 -3.6703 9 7 3.7578 3.0975 -4.5087 10 14 5.0485 0.6588 -4.2576 11 1 6.4965 0.9314 -4.0732 12 1 4.7695 0.4167 -5.6960 13 1 4.6666 -0.5412 -3.4706 14 6 4.0500 2.7387 0.3774 15 1 3.7002 3.5389 -0.2746 16 6 3.6793 3.0273 1.8476 17 6 4.8422 2.4815 2.6586 18 6 4.9278 2.1747 4.0070 19 6 6.1042 1.6836 4.5357 20 6 7.2060 1.4955 3.7137 21 8 8.3668 1.0125 4.2298 22 6 8.3822 0.7188 5.6282 23 6 7.1196 1.8015 2.3646 24 6 5.9389 2.2955 1.8376 25 6 5.5922 2.7010 0.4209 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7090 1.9449 0.9090 32 1 1.6449 1.9675 -0.8697 33 1 3.5096 0.1679 -1.7226 34 1 5.0675 0.9549 -1.3733 35 1 4.0510 3.0476 -5.4320 36 1 3.5757 4.1005 2.0078 37 1 2.7551 2.5137 2.1126 38 1 4.0703 2.3206 4.6471 39 1 6.1670 1.4460 5.5873 40 1 9.3654 0.3414 5.9093 41 1 8.1658 1.6259 6.1925 42 1 7.6271 -0.0356 5.8494 43 1 7.9765 1.6561 1.7235 44 1 5.9728 1.9647 -0.2871 45 1 6.0009 3.6867 0.1989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168278045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = -10.509859 kcal Electronic energy + Delta-G solvation = -23480.692210 eV Core-core repulsion = 20270.225081 eV Total energy + Delta-G solvation = -3210.467129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29651 -38.77910 -36.82935 -33.94466 -32.85269 -31.51489 -31.23820 -28.42520 -27.63844 -27.31453 -25.87600 -24.40924 -22.55061 -21.68840 -20.57082 -20.28087 -18.94239 -17.42983 -16.81449 -16.20246 -15.78188 -15.61151 -15.26821 -14.58628 -14.36834 -14.25556 -13.80758 -13.29562 -13.12540 -12.95733 -12.92960 -12.42693 -12.28797 -12.01279 -11.78074 -11.73578 -11.47513 -11.33787 -11.18221 -11.01830 -10.79106 -10.59066 -10.50526 -10.37869 -10.28301 -10.16282 -9.92426 -9.69363 -9.41878 -8.58846 -8.50789 -7.77497 -7.14033 -6.11031 -4.09966 1.58223 1.67778 3.27328 3.28822 3.35635 3.39745 3.97766 4.39512 4.76843 4.79831 4.93762 5.01202 5.03654 5.13160 5.22245 5.29634 5.33367 5.52885 5.58152 5.62714 5.69420 5.73527 5.83372 5.95111 6.01346 6.12004 6.16807 6.26373 6.30252 6.37020 6.39925 6.49458 6.51201 6.58059 6.61320 6.76551 6.80765 6.89887 6.96286 6.96958 7.05364 7.18314 7.52605 7.58557 8.08487 8.17254 8.44638 8.91299 9.52684 11.01838 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.004830 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.886017 B = 5796.276650 C = 6782.068320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.054 3.946 4 N -0.525 5.525 5 C 0.151 3.849 6 C -0.547 4.547 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.899 5.899 10 Si 0.874 3.126 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.264 1.264 14 C 0.095 3.905 15 H 0.069 0.931 16 C -0.078 4.078 17 C -0.114 4.114 18 C -0.074 4.074 19 C -0.215 4.215 20 C 0.117 3.883 21 O -0.321 6.321 22 C 0.030 3.970 23 C -0.143 4.143 24 C -0.036 4.036 25 C -0.075 4.075 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -3.082 17.710 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.074 4.074 4 N -0.249 5.249 5 C 0.024 3.976 6 C -0.585 4.585 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.189 1.189 14 C -0.014 4.014 15 H 0.087 0.913 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.092 4.092 19 C -0.234 4.234 20 C 0.073 3.927 21 O -0.235 6.235 22 C -0.065 4.065 23 C -0.162 4.162 24 C -0.036 4.036 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.142 0.858 44 H 0.108 0.892 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.002 -3.422 17.757 18.331 hybrid contribution 0.182 -0.157 -0.770 0.807 sum 3.184 -3.580 16.987 17.649 Atomic orbital electron populations 1.21724 0.96658 1.00783 1.01397 1.21443 0.94245 0.97651 1.01980 1.22038 0.88883 0.96154 1.00312 1.62392 1.07316 1.27726 1.27454 1.20233 0.95640 0.96663 0.85016 1.21649 1.35784 1.06650 0.94448 0.90729 1.24930 0.95495 0.95690 0.96724 1.69924 1.46349 1.32549 1.04911 0.86874 0.80928 0.84046 0.78066 1.20145 1.21372 1.18873 1.22048 0.93309 0.92843 0.93182 0.91317 1.21363 0.96289 0.99624 0.94262 1.20628 0.96557 1.01223 0.93061 1.20316 0.96765 0.98013 0.94113 1.20948 0.93971 1.08966 0.99480 1.18744 0.85068 0.96031 0.92850 1.86039 1.32719 1.79661 1.25075 1.22975 1.03239 1.00286 0.79995 1.19780 0.98742 1.05386 0.92274 1.20505 0.92007 0.94333 0.96732 1.21177 0.96247 1.01910 0.91905 0.92753 0.93381 0.93370 0.91846 0.92448 0.92556 0.93195 0.95247 0.95540 0.92731 0.90813 0.90345 0.86512 0.85997 0.88637 0.92932 0.92872 0.85759 0.89172 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.92 6.06 -26.73 -0.16 -2.08 16 3 C 0.05 1.00 4.68 -3.82 -0.02 0.98 16 4 N -0.53 -10.50 4.54 -226.41 -1.03 -11.53 16 5 C 0.15 3.50 3.78 -4.98 -0.02 3.49 16 6 C -0.55 -14.56 8.00 -34.44 -0.28 -14.83 16 7 H 0.07 2.15 6.24 -52.48 -0.33 1.83 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 10 Si 0.87 21.16 27.40 -169.99 -4.66 16.50 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -6.21 6.65 56.52 0.38 -5.83 16 14 C 0.09 1.77 2.26 -66.31 -0.15 1.62 16 15 H 0.07 1.44 6.49 -51.93 -0.34 1.10 16 16 C -0.08 -1.21 6.26 -26.58 -0.17 -1.38 16 17 C -0.11 -1.80 6.15 -103.90 -0.64 -2.44 16 18 C -0.07 -1.02 10.03 -39.55 -0.40 -1.42 16 19 C -0.21 -2.84 9.04 -39.48 -0.36 -3.19 16 20 C 0.12 1.73 6.68 -39.26 -0.26 1.47 16 21 O -0.32 -4.30 10.50 -19.45 -0.20 -4.51 16 22 C 0.03 0.26 9.81 101.05 0.99 1.26 16 23 C -0.14 -2.29 9.98 -39.38 -0.39 -2.68 16 24 C -0.04 -0.60 6.13 -104.22 -0.64 -1.24 16 25 C -0.08 -1.36 6.30 -26.85 -0.17 -1.53 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.17 6.67 -51.93 -0.35 0.82 16 30 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.06 0.92 5.76 -51.93 -0.30 0.63 16 32 H 0.05 1.05 6.71 -51.93 -0.35 0.70 16 33 H 0.03 0.71 5.86 -51.93 -0.30 0.40 16 34 H 0.03 0.63 5.42 -51.93 -0.28 0.35 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.18 5.91 -51.93 -0.31 0.87 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.27 6.31 -52.49 -0.33 0.94 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 42 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 43 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.09 1.78 5.84 -51.93 -0.30 1.47 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -29.86 345.76 -9.24 -39.10 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.95 Total: 2.95 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.38 Total: -21.71 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.25 Total: -37.54 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.66 Total: 16.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.86 -9.24 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168278045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.587 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds