Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46928 * 2 1 4 4 N 1.46905 * 109.47120 * 182.18899 * 3 2 1 5 5 C 1.46898 * 110.99770 * 74.45448 * 4 3 2 6 6 C 1.50699 * 109.47308 * 68.34743 * 5 4 3 7 7 H 1.08007 * 119.99786 * 356.39196 * 6 5 4 8 8 C 1.37876 * 120.00270 * 176.38657 * 6 5 4 9 9 N 1.31517 * 119.99974 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99869 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47245 * 269.99955 * 10 8 6 12 12 H 1.48504 * 109.47009 * 149.99679 * 10 8 6 13 13 H 1.48494 * 109.47083 * 30.00016 * 10 8 6 14 14 C 1.46900 * 110.99790 * 198.40697 * 4 3 2 15 15 H 1.08994 * 110.73220 * 299.19022 * 14 4 3 16 16 C 1.54340 * 110.81921 * 62.59635 * 14 4 3 17 17 C 1.51924 * 104.92047 * 91.92615 * 16 14 4 18 18 C 1.38543 * 130.27240 * 197.18865 * 17 16 14 19 19 C 1.38011 * 120.28777 * 180.02562 * 18 17 16 20 20 C 1.38746 * 119.87741 * 359.97438 * 19 18 17 21 21 O 1.35909 * 120.09072 * 179.97438 * 20 19 18 22 22 C 1.42893 * 116.99819 * 0.02562 * 21 20 19 23 23 C 1.38600 * 119.81783 * 359.97438 * 20 19 18 24 24 C 1.38260 * 109.78562 * 17.21101 * 17 16 14 25 25 C 1.51377 * 109.75907 * 359.97438 * 24 17 16 26 26 H 1.08995 * 109.47246 * 60.00293 * 1 2 3 27 27 H 1.09006 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47333 * 300.00072 * 1 2 3 29 29 H 1.08997 * 109.47333 * 239.99928 * 2 1 3 30 30 H 1.09008 * 109.46667 * 119.99576 * 2 1 3 31 31 H 1.09003 * 109.47352 * 62.19002 * 3 2 1 32 32 H 1.09003 * 109.47018 * 302.19083 * 3 2 1 33 33 H 1.08998 * 109.47465 * 308.34803 * 5 4 3 34 34 H 1.08998 * 109.46972 * 188.34354 * 5 4 3 35 35 H 0.97002 * 119.99671 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.29950 * 210.77901 * 16 14 4 37 37 H 1.09001 * 110.30700 * 332.92954 * 16 14 4 38 38 H 1.07996 * 119.85770 * 0.02562 * 18 17 16 39 39 H 1.07995 * 120.05905 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47163 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47457 * 300.00228 * 22 21 20 42 42 H 1.09006 * 109.47281 * 60.00116 * 22 21 20 43 43 H 1.08002 * 119.91051 * 179.97438 * 23 20 19 44 44 H 1.09002 * 110.30269 * 223.87396 * 25 24 17 45 45 H 1.08996 * 110.30362 * 101.72443 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5081 1.4429 -0.0529 5 6 3.9864 1.0923 -1.3968 6 6 3.6419 2.2009 -2.3578 7 1 3.0690 3.0512 -2.0182 8 6 4.0581 2.1297 -3.6703 9 7 3.7578 3.0975 -4.5087 10 14 5.0485 0.6588 -4.2576 11 1 6.4965 0.9314 -4.0732 12 1 4.7695 0.4167 -5.6960 13 1 4.6666 -0.5412 -3.4706 14 6 4.0500 2.7387 0.3774 15 1 3.7002 3.5389 -0.2746 16 6 3.6793 3.0273 1.8476 17 6 4.8422 2.4815 2.6586 18 6 4.9278 2.1747 4.0070 19 6 6.1042 1.6836 4.5357 20 6 7.2060 1.4955 3.7137 21 8 8.3668 1.0125 4.2298 22 6 8.3822 0.7188 5.6282 23 6 7.1196 1.8015 2.3646 24 6 5.9389 2.2955 1.8376 25 6 5.5922 2.7010 0.4209 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7090 1.9449 0.9090 32 1 1.6449 1.9675 -0.8697 33 1 3.5096 0.1679 -1.7226 34 1 5.0675 0.9549 -1.3733 35 1 4.0510 3.0476 -5.4320 36 1 3.5757 4.1005 2.0078 37 1 2.7551 2.5137 2.1126 38 1 4.0703 2.3206 4.6471 39 1 6.1670 1.4460 5.5873 40 1 9.3654 0.3414 5.9093 41 1 8.1658 1.6259 6.1925 42 1 7.6271 -0.0356 5.8494 43 1 7.9765 1.6561 1.7235 44 1 5.9728 1.9647 -0.2871 45 1 6.0009 3.6867 0.1989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168278045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = -28.084637 kcal Electronic energy + Delta-G solvation = -23481.454310 eV Core-core repulsion = 20270.225081 eV Total energy + Delta-G solvation = -3211.229229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46035 -39.99653 -38.18907 -35.21127 -34.81000 -33.09083 -32.39493 -29.88592 -28.89599 -28.57194 -27.07214 -25.90274 -24.16504 -22.98059 -21.86747 -21.49184 -20.59018 -18.88170 -18.41158 -17.50404 -17.06402 -16.60656 -16.54835 -16.27865 -15.84887 -15.58487 -15.19301 -14.66857 -14.43257 -14.21435 -14.14140 -14.02079 -13.73268 -13.31842 -13.16476 -12.99865 -12.86990 -12.66608 -12.53394 -12.38295 -12.30204 -12.22622 -11.97454 -11.74216 -11.71481 -11.54744 -11.45487 -11.42212 -11.11697 -10.74892 -9.67870 -8.91660 -8.85130 -8.29759 -6.32106 0.44918 0.54779 1.33000 1.35015 1.45860 2.33408 2.38960 2.83985 3.05951 3.24776 3.59734 3.75261 4.00975 4.07634 4.21110 4.33271 4.35845 4.39364 4.44228 4.44649 4.52255 4.59127 4.66177 4.75734 4.77046 4.84236 4.85287 4.91192 4.95259 4.99027 5.10885 5.13441 5.15562 5.19642 5.26663 5.33908 5.36526 5.42006 5.47739 5.53972 5.58683 5.86159 5.87426 6.15386 6.40497 6.53623 6.54959 6.74382 7.34081 8.86304 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.004830 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.886017 B = 5796.276650 C = 6782.068320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.055 3.945 4 N -0.519 5.519 5 C 0.161 3.839 6 C -0.536 4.536 7 H 0.040 0.960 8 C 0.017 3.983 9 N -0.946 5.946 10 Si 0.935 3.065 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.250 1.250 14 C 0.090 3.910 15 H 0.036 0.964 16 C -0.065 4.065 17 C -0.126 4.126 18 C -0.069 4.069 19 C -0.206 4.206 20 C 0.115 3.885 21 O -0.340 6.340 22 C 0.019 3.981 23 C -0.164 4.164 24 C -0.054 4.054 25 C -0.074 4.074 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -4.726 21.105 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.073 4.073 4 N -0.242 5.242 5 C 0.034 3.966 6 C -0.575 4.575 7 H 0.058 0.942 8 C -0.181 4.181 9 N -0.586 5.586 10 Si 0.760 3.240 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.174 1.174 14 C -0.019 4.019 15 H 0.054 0.946 16 C -0.102 4.102 17 C -0.127 4.127 18 C -0.087 4.087 19 C -0.225 4.225 20 C 0.070 3.930 21 O -0.254 6.254 22 C -0.075 4.075 23 C -0.182 4.182 24 C -0.054 4.054 25 C -0.111 4.111 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.135 0.865 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.055 -5.075 21.183 21.995 hybrid contribution 0.195 0.406 -1.696 1.754 sum 3.250 -4.669 19.487 20.300 Atomic orbital electron populations 1.21679 0.94406 1.02151 1.01730 1.21412 0.96207 0.95859 1.01401 1.22118 0.87677 0.97541 0.99931 1.62444 1.08382 1.28436 1.24956 1.20026 0.95494 0.95089 0.86019 1.21831 1.34230 1.06379 0.95092 0.94212 1.25755 0.96854 0.98503 0.96996 1.70063 1.48361 1.34853 1.05368 0.85879 0.79560 0.80954 0.77634 1.19389 1.21057 1.17413 1.22051 0.93751 0.91052 0.95004 0.94644 1.21230 0.96765 1.00800 0.91451 1.20679 0.95777 1.02135 0.94081 1.20651 0.98016 0.96628 0.93367 1.21324 0.92917 1.07314 1.00921 1.18841 0.86099 0.95562 0.92488 1.86024 1.32239 1.79368 1.27762 1.23335 1.05114 1.01415 0.77636 1.19862 0.98467 1.06415 0.93493 1.20334 0.93172 0.96125 0.95788 1.21063 0.95812 1.01237 0.93025 0.94006 0.91507 0.91468 0.94119 0.91203 0.90020 0.96699 0.95559 0.95698 0.92680 0.89303 0.89306 0.83416 0.82609 0.86499 0.91483 0.91727 0.86293 0.91550 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.11 -3.57 6.06 30.59 0.19 -3.39 16 3 C 0.06 2.04 4.68 86.30 0.40 2.44 16 4 N -0.52 -21.07 4.54 -870.21 -3.95 -25.02 16 5 C 0.16 7.68 3.78 85.56 0.32 8.00 16 6 C -0.54 -29.93 8.00 25.60 0.20 -29.73 16 7 H 0.04 2.46 6.24 -2.91 -0.02 2.44 16 8 C 0.02 0.98 5.47 84.65 0.46 1.44 16 9 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 10 Si 0.94 44.48 27.40 68.60 1.88 46.36 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.25 -11.26 6.65 99.48 0.66 -10.59 16 14 C 0.09 3.46 2.26 45.82 0.10 3.57 16 15 H 0.04 1.59 6.49 -2.39 -0.02 1.57 16 16 C -0.07 -1.95 6.26 30.69 0.19 -1.76 16 17 C -0.13 -3.74 6.15 -19.39 -0.12 -3.86 16 18 C -0.07 -1.64 10.03 22.29 0.22 -1.42 16 19 C -0.21 -4.67 9.04 22.34 0.20 -4.46 16 20 C 0.12 3.14 6.68 22.48 0.15 3.29 16 21 O -0.34 -8.34 10.50 -92.52 -0.97 -9.32 16 22 C 0.02 0.27 9.81 113.37 1.11 1.38 16 23 C -0.16 -5.19 9.98 22.40 0.22 -4.97 16 24 C -0.05 -1.81 6.13 -19.60 -0.12 -1.93 16 25 C -0.07 -2.79 6.30 30.52 0.19 -2.60 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.48 6.67 -2.39 -0.02 1.46 16 30 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.08 2.57 5.76 -2.39 -0.01 2.56 16 32 H 0.01 0.65 6.71 -2.39 -0.02 0.63 16 33 H 0.03 1.28 5.86 -2.39 -0.01 1.26 16 34 H 0.03 1.21 5.42 -2.39 -0.01 1.20 16 35 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.09 2.44 5.91 -2.39 -0.01 2.43 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.16 2.42 6.31 -2.91 -0.02 2.40 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 42 H 0.06 0.76 7.67 -2.38 -0.02 0.74 16 43 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.07 2.76 5.84 -2.39 -0.01 2.74 16 45 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -67.29 345.76 2.64 -64.65 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.93 Total: 18.65 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 4.45 Total: -36.98 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -3.65 Total: -83.36 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.97 Total: -9.32 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -67.29 2.64 -64.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168278045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.565 kcal (2) G-P(sol) polarization free energy of solvation -67.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds