Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46679 * 2 1 4 4 N 1.46908 * 109.46800 * 185.17786 * 3 2 1 5 5 C 1.46899 * 110.99807 * 160.62833 * 4 3 2 6 6 C 1.50700 * 109.47411 * 293.51747 * 5 4 3 7 7 H 1.07994 * 119.99654 * 355.03482 * 6 5 4 8 8 C 1.37874 * 120.00157 * 175.03421 * 6 5 4 9 9 N 1.31509 * 120.00041 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00000 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47295 * 90.00013 * 10 8 6 12 12 H 1.48496 * 109.47239 * 210.00153 * 10 8 6 13 13 H 1.48499 * 109.47163 * 330.00113 * 10 8 6 14 14 C 1.46894 * 110.99813 * 284.58455 * 4 3 2 15 15 H 1.09000 * 110.73119 * 51.59435 * 14 4 3 16 16 C 1.54345 * 110.99265 * 288.07179 * 14 4 3 17 17 C 1.51390 * 105.17399 * 268.07172 * 16 14 4 18 18 C 1.38549 * 130.32244 * 162.78150 * 17 16 14 19 19 C 1.38004 * 120.29040 * 180.02562 * 18 17 16 20 20 C 1.38748 * 119.87664 * 0.25574 * 19 18 17 21 21 O 1.35901 * 120.09109 * 179.72079 * 20 19 18 22 22 C 1.42903 * 117.00345 * 359.97438 * 21 20 19 23 23 C 1.38599 * 119.81558 * 359.45012 * 20 19 18 24 24 C 1.38251 * 109.74177 * 342.79703 * 17 16 14 25 25 C 1.51382 * 109.75602 * 0.02562 * 24 17 16 26 26 H 1.09005 * 109.46880 * 300.00117 * 1 2 3 27 27 H 1.08993 * 109.46820 * 60.00175 * 1 2 3 28 28 H 1.08998 * 109.46670 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47344 * 239.99835 * 2 1 3 30 30 H 1.09002 * 109.46920 * 119.99206 * 2 1 3 31 31 H 1.08995 * 109.47760 * 65.17723 * 3 2 1 32 32 H 1.09003 * 109.47178 * 305.17208 * 3 2 1 33 33 H 1.09001 * 109.47054 * 53.51855 * 5 4 3 34 34 H 1.09004 * 109.47121 * 173.51440 * 5 4 3 35 35 H 0.97010 * 119.99911 * 180.02562 * 9 8 6 36 36 H 1.08997 * 110.30214 * 149.14277 * 16 14 4 37 37 H 1.08997 * 110.29980 * 26.99270 * 16 14 4 38 38 H 1.07999 * 119.85922 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.06190 * 179.97438 * 19 18 17 40 40 H 1.08991 * 109.47617 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47250 * 300.00805 * 22 21 20 42 42 H 1.09002 * 109.46294 * 60.00265 * 22 21 20 43 43 H 1.08002 * 119.91153 * 180.22757 * 23 20 19 44 44 H 1.08996 * 110.30489 * 136.12851 * 25 24 17 45 45 H 1.09003 * 110.30294 * 258.27762 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4445 -0.1250 5 6 3.9911 2.7520 -0.5839 6 6 3.5198 2.9972 -1.9942 7 1 2.9872 2.2238 -2.5276 8 6 3.7687 4.2087 -2.6034 9 7 3.3578 4.4224 -3.8343 10 14 4.6894 5.5466 -1.6805 11 1 6.1469 5.4049 -1.9272 12 1 4.2342 6.8782 -2.1548 13 1 4.4190 5.4204 -0.2258 14 6 4.1407 1.0601 1.1416 15 1 3.7194 0.1279 1.5180 16 6 4.0088 2.1846 2.1905 17 6 5.2602 3.0220 2.0332 18 6 5.5394 4.3074 2.4685 19 6 6.7677 4.8795 2.2065 20 6 7.7255 4.1668 1.4996 21 8 8.9344 4.7281 1.2343 22 6 9.1518 6.0570 1.7129 23 6 7.4480 2.8787 1.0697 24 6 6.2150 2.3079 1.3334 25 6 5.6701 0.9425 0.9723 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.7544 1.9290 0.9326 32 1 1.6029 1.9824 -0.8401 33 1 3.6041 3.5339 0.0696 34 1 5.0808 2.7632 -0.5578 35 1 3.5333 5.2748 -4.2631 36 1 3.9601 1.7620 3.1940 37 1 3.1229 2.7871 1.9896 38 1 4.7924 4.8643 3.0144 39 1 6.9813 5.8819 2.5472 40 1 10.1535 6.3842 1.4345 41 1 8.4143 6.7274 1.2715 42 1 9.0534 6.0727 2.7984 43 1 8.1938 2.3212 0.5225 44 1 5.9190 0.6968 -0.0600 45 1 6.0677 0.1856 1.6485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168278046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = -9.463443 kcal Electronic energy + Delta-G solvation = -24143.748778 eV Core-core repulsion = 20933.327025 eV Total energy + Delta-G solvation = -3210.421753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52122 -38.94406 -36.59762 -33.88152 -32.82592 -31.50602 -31.13463 -28.46253 -27.97188 -27.07322 -25.97757 -24.52782 -22.52363 -21.17044 -21.03940 -20.49866 -18.76206 -17.48071 -16.96118 -16.16732 -15.65745 -15.43284 -15.14814 -14.68386 -14.31922 -14.11100 -13.86293 -13.47997 -13.19240 -13.08469 -12.91102 -12.55478 -12.25809 -11.95335 -11.77411 -11.75430 -11.53440 -11.31362 -11.22632 -11.10801 -10.88015 -10.77787 -10.58406 -10.39681 -10.25351 -10.14661 -9.84866 -9.74864 -9.21569 -8.57145 -8.38761 -7.75190 -7.27809 -6.00343 -3.96008 1.60448 1.70684 3.33737 3.35391 3.40089 3.46706 3.98709 4.48463 4.65856 4.83236 4.88629 5.00891 5.13302 5.17196 5.30033 5.33222 5.42402 5.43211 5.50257 5.54037 5.58467 5.68535 5.74074 5.80889 5.91071 5.96963 6.02626 6.12631 6.18278 6.27677 6.35126 6.38934 6.43691 6.48317 6.56231 6.62630 6.73499 6.84187 6.97316 6.98905 7.07131 7.14067 7.57965 7.71698 7.97780 8.15094 8.72461 9.09588 9.63417 11.12666 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.006903 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.201850 B = 4055.270652 C = 5456.007362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.057 3.943 4 N -0.515 5.515 5 C 0.160 3.840 6 C -0.507 4.507 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.902 5.902 10 Si 0.862 3.138 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.260 1.260 14 C 0.083 3.917 15 H 0.089 0.911 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.069 4.069 19 C -0.213 4.213 20 C 0.122 3.878 21 O -0.319 6.319 22 C 0.029 3.971 23 C -0.141 4.141 24 C -0.043 4.043 25 C -0.076 4.076 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.090 0.910 33 H -0.008 1.008 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.092 0.908 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -2.771 14.756 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.070 4.070 4 N -0.237 5.237 5 C 0.034 3.966 6 C -0.545 4.545 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.542 5.542 10 Si 0.689 3.311 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.185 1.185 14 C -0.027 4.027 15 H 0.107 0.893 16 C -0.150 4.150 17 C -0.121 4.121 18 C -0.087 4.087 19 C -0.232 4.232 20 C 0.077 3.923 21 O -0.233 6.233 22 C -0.066 4.066 23 C -0.160 4.160 24 C -0.043 4.043 25 C -0.113 4.113 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.010 0.990 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.021 -3.053 14.138 15.310 hybrid contribution 0.253 1.993 1.071 2.276 sum 5.274 -1.061 15.209 16.132 Atomic orbital electron populations 1.21732 0.96541 1.00794 1.01646 1.21506 0.94539 0.97711 1.01701 1.22088 0.88499 0.95774 1.00682 1.62159 1.04925 1.32684 1.23980 1.20302 0.96023 0.84525 0.95782 1.21101 1.36330 1.00272 0.96783 0.90184 1.24838 0.95445 0.98038 0.94684 1.69897 1.47237 1.24443 1.12576 0.87017 0.80908 0.81752 0.81399 1.20141 1.21570 1.18486 1.22429 0.94052 0.96751 0.89478 0.89323 1.21711 0.95563 0.97523 1.00165 1.20427 0.96745 0.94550 1.00406 1.20307 0.95642 0.93976 0.98752 1.20984 0.95227 1.00836 1.06151 1.18746 0.84714 0.92898 0.95942 1.86031 1.31772 1.30368 1.75095 1.23002 1.02537 0.82021 0.99076 1.19733 0.97704 0.93446 1.05101 1.20353 0.92258 0.96679 0.95035 1.21165 0.94629 0.92497 1.03053 0.93405 0.92508 0.93332 0.91278 0.93201 0.96078 0.89145 0.98987 0.94961 0.92843 0.90856 0.90723 0.86522 0.85833 0.88470 0.92808 0.92883 0.85503 0.88960 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.77 5.97 -26.73 -0.16 -1.93 16 3 C 0.06 1.07 4.67 -3.82 -0.02 1.05 16 4 N -0.52 -10.38 4.42 -226.41 -1.00 -11.38 16 5 C 0.16 3.86 2.31 -4.98 -0.01 3.85 16 6 C -0.51 -14.50 8.69 -34.44 -0.30 -14.80 16 7 H 0.08 2.48 7.77 -52.49 -0.41 2.07 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 10 Si 0.86 22.46 27.57 -169.99 -4.69 17.77 16 11 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.58 6.40 56.52 0.36 -6.22 16 14 C 0.08 1.35 3.18 -66.32 -0.21 1.14 16 15 H 0.09 1.25 6.83 -51.93 -0.35 0.90 16 16 C -0.11 -1.76 5.57 -26.84 -0.15 -1.91 16 17 C -0.12 -2.11 4.74 -104.16 -0.49 -2.60 16 18 C -0.07 -1.15 10.03 -39.55 -0.40 -1.55 16 19 C -0.21 -3.47 9.04 -39.48 -0.36 -3.83 16 20 C 0.12 2.10 6.68 -39.26 -0.26 1.84 16 21 O -0.32 -5.06 10.50 -19.43 -0.20 -5.26 16 22 C 0.03 0.33 9.81 101.05 0.99 1.32 16 23 C -0.14 -2.49 9.98 -39.38 -0.39 -2.88 16 24 C -0.04 -0.76 4.24 -104.22 -0.44 -1.20 16 25 C -0.08 -1.21 5.85 -26.86 -0.16 -1.37 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.68 7.00 -51.93 -0.36 0.32 16 31 H 0.02 0.37 6.48 -51.93 -0.34 0.03 16 32 H 0.09 1.96 6.70 -51.93 -0.35 1.62 16 33 H -0.01 -0.19 5.36 -51.93 -0.28 -0.47 16 34 H 0.03 0.81 5.02 -51.93 -0.26 0.55 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.28 5.96 -51.93 -0.31 0.97 16 38 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.12 1.66 6.31 -52.49 -0.33 1.33 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 42 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 43 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 44 H 0.09 1.59 8.02 -51.93 -0.42 1.18 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 345.39 15.07 5.21 5.21 Total: -1.00 -32.40 345.39 -9.18 -41.58 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.18 Total: 1.92 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.09 Total: -22.46 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.23 Total: -38.75 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.20 Total: -5.26 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.69 Total: 17.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.40 -9.18 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168278046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.115 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds