Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46679 * 2 1 4 4 N 1.46908 * 109.46800 * 185.17786 * 3 2 1 5 5 C 1.46899 * 110.99807 * 160.62833 * 4 3 2 6 6 C 1.50700 * 109.47411 * 293.51747 * 5 4 3 7 7 H 1.07994 * 119.99654 * 355.03482 * 6 5 4 8 8 C 1.37874 * 120.00157 * 175.03421 * 6 5 4 9 9 N 1.31509 * 120.00041 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00000 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47295 * 90.00013 * 10 8 6 12 12 H 1.48496 * 109.47239 * 210.00153 * 10 8 6 13 13 H 1.48499 * 109.47163 * 330.00113 * 10 8 6 14 14 C 1.46894 * 110.99813 * 284.58455 * 4 3 2 15 15 H 1.09000 * 110.73119 * 51.59435 * 14 4 3 16 16 C 1.54345 * 110.99265 * 288.07179 * 14 4 3 17 17 C 1.51390 * 105.17399 * 268.07172 * 16 14 4 18 18 C 1.38549 * 130.32244 * 162.78150 * 17 16 14 19 19 C 1.38004 * 120.29040 * 180.02562 * 18 17 16 20 20 C 1.38748 * 119.87664 * 0.25574 * 19 18 17 21 21 O 1.35901 * 120.09109 * 179.72079 * 20 19 18 22 22 C 1.42903 * 117.00345 * 359.97438 * 21 20 19 23 23 C 1.38599 * 119.81558 * 359.45012 * 20 19 18 24 24 C 1.38251 * 109.74177 * 342.79703 * 17 16 14 25 25 C 1.51382 * 109.75602 * 0.02562 * 24 17 16 26 26 H 1.09005 * 109.46880 * 300.00117 * 1 2 3 27 27 H 1.08993 * 109.46820 * 60.00175 * 1 2 3 28 28 H 1.08998 * 109.46670 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47344 * 239.99835 * 2 1 3 30 30 H 1.09002 * 109.46920 * 119.99206 * 2 1 3 31 31 H 1.08995 * 109.47760 * 65.17723 * 3 2 1 32 32 H 1.09003 * 109.47178 * 305.17208 * 3 2 1 33 33 H 1.09001 * 109.47054 * 53.51855 * 5 4 3 34 34 H 1.09004 * 109.47121 * 173.51440 * 5 4 3 35 35 H 0.97010 * 119.99911 * 180.02562 * 9 8 6 36 36 H 1.08997 * 110.30214 * 149.14277 * 16 14 4 37 37 H 1.08997 * 110.29980 * 26.99270 * 16 14 4 38 38 H 1.07999 * 119.85922 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.06190 * 179.97438 * 19 18 17 40 40 H 1.08991 * 109.47617 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47250 * 300.00805 * 22 21 20 42 42 H 1.09002 * 109.46294 * 60.00265 * 22 21 20 43 43 H 1.08002 * 119.91153 * 180.22757 * 23 20 19 44 44 H 1.08996 * 110.30489 * 136.12851 * 25 24 17 45 45 H 1.09003 * 110.30294 * 258.27762 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4445 -0.1250 5 6 3.9911 2.7520 -0.5839 6 6 3.5198 2.9972 -1.9942 7 1 2.9872 2.2238 -2.5276 8 6 3.7687 4.2087 -2.6034 9 7 3.3578 4.4224 -3.8343 10 14 4.6894 5.5466 -1.6805 11 1 6.1469 5.4049 -1.9272 12 1 4.2342 6.8782 -2.1548 13 1 4.4190 5.4204 -0.2258 14 6 4.1407 1.0601 1.1416 15 1 3.7194 0.1279 1.5180 16 6 4.0088 2.1846 2.1905 17 6 5.2602 3.0220 2.0332 18 6 5.5394 4.3074 2.4685 19 6 6.7677 4.8795 2.2065 20 6 7.7255 4.1668 1.4996 21 8 8.9344 4.7281 1.2343 22 6 9.1518 6.0570 1.7129 23 6 7.4480 2.8787 1.0697 24 6 6.2150 2.3079 1.3334 25 6 5.6701 0.9425 0.9723 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.7544 1.9290 0.9326 32 1 1.6029 1.9824 -0.8401 33 1 3.6041 3.5339 0.0696 34 1 5.0808 2.7632 -0.5578 35 1 3.5333 5.2748 -4.2631 36 1 3.9601 1.7620 3.1940 37 1 3.1229 2.7871 1.9896 38 1 4.7924 4.8643 3.0144 39 1 6.9813 5.8819 2.5472 40 1 10.1535 6.3842 1.4345 41 1 8.4143 6.7274 1.2715 42 1 9.0534 6.0727 2.7984 43 1 8.1938 2.3212 0.5225 44 1 5.9190 0.6968 -0.0600 45 1 6.0677 0.1856 1.6485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168278046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = -29.548985 kcal Electronic energy + Delta-G solvation = -24144.619753 eV Core-core repulsion = 20933.327025 eV Total energy + Delta-G solvation = -3211.292728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78860 -40.17855 -37.95647 -35.14853 -34.89316 -33.03872 -32.41450 -30.13046 -29.06815 -28.48874 -27.12264 -26.08561 -24.03289 -22.71181 -22.37332 -21.70119 -20.21014 -19.16525 -18.54917 -17.41849 -17.01371 -16.66630 -16.50073 -16.25280 -15.83525 -15.52786 -15.30951 -15.08274 -14.52949 -14.35395 -14.19693 -14.11973 -13.70251 -13.42991 -13.12471 -13.00293 -12.84192 -12.70490 -12.57453 -12.49445 -12.34164 -12.23559 -12.03166 -11.90627 -11.67360 -11.60990 -11.55184 -11.32666 -11.16380 -10.80244 -9.72748 -9.05498 -8.81242 -8.31231 -6.30298 0.35006 0.44227 1.23914 1.26729 1.37463 2.28441 2.29623 2.73244 3.03711 3.23028 3.57300 3.65999 3.90706 4.06875 4.15231 4.24480 4.29308 4.32167 4.32877 4.36280 4.49093 4.51351 4.58826 4.64736 4.69685 4.72161 4.84540 4.88805 4.93449 4.97503 5.04096 5.11559 5.12721 5.18149 5.25002 5.29581 5.34273 5.40786 5.49450 5.55922 5.60766 5.70772 5.79582 6.05027 6.42487 6.48838 6.73364 6.78945 7.32843 8.85493 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.006903 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.201850 B = 4055.270652 C = 5456.007362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.530 5.530 5 C 0.182 3.818 6 C -0.507 4.507 7 H 0.040 0.960 8 C 0.015 3.985 9 N -0.947 5.947 10 Si 0.926 3.074 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.247 1.247 14 C 0.081 3.919 15 H 0.121 0.879 16 C -0.104 4.104 17 C -0.140 4.140 18 C -0.081 4.081 19 C -0.218 4.218 20 C 0.110 3.890 21 O -0.337 6.337 22 C 0.018 3.982 23 C -0.165 4.165 24 C -0.058 4.058 25 C -0.074 4.074 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.046 0.954 33 H -0.015 1.015 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.071 0.929 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -2.873 17.760 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.068 4.068 4 N -0.252 5.252 5 C 0.055 3.945 6 C -0.545 4.545 7 H 0.059 0.941 8 C -0.182 4.182 9 N -0.588 5.588 10 Si 0.751 3.249 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.170 1.170 14 C -0.028 4.028 15 H 0.139 0.861 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.099 4.099 19 C -0.237 4.237 20 C 0.065 3.935 21 O -0.251 6.251 22 C -0.076 4.076 23 C -0.183 4.183 24 C -0.058 4.058 25 C -0.111 4.111 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.002 0.998 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.090 0.910 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.442 -3.166 17.163 18.281 hybrid contribution 0.145 1.981 0.117 1.989 sum 5.587 -1.186 17.279 18.199 Atomic orbital electron populations 1.21706 0.94952 1.02223 1.01461 1.21431 0.95864 0.95116 1.02121 1.22051 0.87513 0.97828 0.99371 1.62068 1.05994 1.30093 1.27083 1.19867 0.95245 0.86575 0.92792 1.21402 1.35100 0.99156 0.98870 0.94132 1.25633 0.96574 1.00539 0.95471 1.70034 1.49137 1.25315 1.14326 0.85994 0.79084 0.79004 0.80773 1.20415 1.20801 1.17040 1.22618 0.94156 0.98247 0.87797 0.86099 1.21687 0.94182 0.96773 1.01592 1.20735 0.97327 0.95166 1.00804 1.20657 0.96345 0.94069 0.98854 1.21312 0.94819 1.01923 1.05606 1.18960 0.85510 0.93030 0.95998 1.86011 1.31178 1.32436 1.75488 1.23344 1.03998 0.79938 1.00344 1.19978 0.98229 0.94256 1.05869 1.20594 0.92413 0.97509 0.95293 1.21219 0.94350 0.92868 1.02664 0.92109 0.94232 0.91070 0.93000 0.90487 0.94690 0.93553 0.99776 0.95591 0.92681 0.87496 0.92126 0.84662 0.83293 0.85943 0.92901 0.90975 0.85332 0.91038 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.10 5.97 30.60 0.18 -2.92 16 3 C 0.06 2.21 4.67 86.30 0.40 2.62 16 4 N -0.53 -21.11 4.42 -870.22 -3.84 -24.96 16 5 C 0.18 8.87 2.31 85.56 0.20 9.06 16 6 C -0.51 -30.07 8.69 25.60 0.22 -29.85 16 7 H 0.04 2.66 7.77 -2.91 -0.02 2.64 16 8 C 0.01 0.91 5.47 84.65 0.46 1.37 16 9 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 10 Si 0.93 47.15 27.57 68.60 1.89 49.04 16 11 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.25 -11.89 6.40 99.48 0.64 -11.26 16 14 C 0.08 2.44 3.18 45.82 0.15 2.58 16 15 H 0.12 2.89 6.83 -2.39 -0.02 2.88 16 16 C -0.10 -2.99 5.57 30.52 0.17 -2.82 16 17 C -0.14 -4.59 4.74 -19.57 -0.09 -4.68 16 18 C -0.08 -2.54 10.03 22.29 0.22 -2.31 16 19 C -0.22 -6.61 9.04 22.34 0.20 -6.41 16 20 C 0.11 3.66 6.68 22.48 0.15 3.81 16 21 O -0.34 -10.20 10.50 -92.44 -0.97 -11.17 16 22 C 0.02 0.36 9.81 113.37 1.11 1.47 16 23 C -0.16 -5.70 9.98 22.40 0.22 -5.48 16 24 C -0.06 -1.95 4.24 -19.60 -0.08 -2.03 16 25 C -0.07 -2.21 5.85 30.51 0.18 -2.03 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.82 7.00 -2.39 -0.02 1.80 16 31 H 0.03 1.18 6.48 -2.39 -0.02 1.16 16 32 H 0.05 2.10 6.70 -2.39 -0.02 2.08 16 33 H -0.02 -0.77 5.36 -2.39 -0.01 -0.78 16 34 H 0.03 1.31 5.02 -2.39 -0.01 1.30 16 35 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 36 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 1.93 5.96 -2.39 -0.01 1.92 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.15 3.57 6.31 -2.91 -0.02 3.55 16 40 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.07 7.67 -2.39 -0.02 1.05 16 42 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 43 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 44 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16 45 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.73 345.39 2.69 -70.05 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.90 Total: 18.25 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 4.41 Total: -40.50 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.54 Total: -85.67 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.97 Total: -11.17 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.89 Total: 49.04 kcal Total: -72.73 2.69 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168278046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.499 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds