Wall clock time and date at job start Tue Mar 31 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99663 * 2 1 4 4 O 1.42895 * 109.47087 * 134.99970 * 3 2 1 5 5 C 1.35905 * 117.00146 * 179.97438 * 4 3 2 6 6 C 1.38732 * 120.05302 * 359.72939 * 5 4 3 7 7 C 1.38145 * 119.94275 * 179.74606 * 6 5 4 8 8 C 1.38268 * 120.05499 * 0.49877 * 7 6 5 9 9 C 1.50695 * 119.94215 * 179.74585 * 8 7 6 10 10 N 1.46897 * 109.47637 * 270.02729 * 9 8 7 11 11 C 1.46898 * 111.00307 * 190.00450 * 10 9 8 12 12 C 1.50695 * 109.47193 * 164.74097 * 11 10 9 13 13 H 1.08004 * 120.00388 * 0.16294 * 12 11 10 14 14 C 1.37880 * 120.00329 * 180.16962 * 12 11 10 15 15 N 1.31508 * 120.00522 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99655 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47321 * 90.00164 * 16 14 12 18 18 H 1.48495 * 109.47372 * 210.00019 * 16 14 12 19 19 H 1.48498 * 109.47469 * 330.00175 * 16 14 12 20 20 C 1.46901 * 111.00145 * 66.04600 * 10 9 8 21 21 C 1.53001 * 109.46939 * 62.50345 * 20 10 9 22 22 C 1.52993 * 109.47232 * 182.41595 * 21 20 10 23 23 C 1.38265 * 120.11031 * 359.77618 * 8 7 6 24 24 C 1.38142 * 120.05435 * 359.97399 * 23 8 7 25 25 H 1.08001 * 120.00614 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99690 * 180.02562 * 1 2 3 27 27 H 1.07994 * 119.99764 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47602 * 14.99487 * 3 2 1 29 29 H 1.09006 * 109.46903 * 255.00028 * 3 2 1 30 30 H 1.08000 * 120.02793 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.97028 * 180.23409 * 7 6 5 32 32 H 1.08996 * 109.47455 * 30.02982 * 9 8 7 33 33 H 1.09007 * 109.46798 * 150.02744 * 9 8 7 34 34 H 1.09003 * 109.47296 * 284.73490 * 11 10 9 35 35 H 1.08997 * 109.47461 * 44.73768 * 11 10 9 36 36 H 0.97001 * 120.00247 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47443 * 182.50117 * 20 10 9 38 38 H 1.09004 * 109.46920 * 302.50466 * 20 10 9 39 39 H 1.09007 * 109.47192 * 302.41769 * 21 20 10 40 40 H 1.08997 * 109.47366 * 62.41179 * 21 20 10 41 41 H 1.08997 * 109.47179 * 299.99979 * 22 21 20 42 42 H 1.08997 * 109.47285 * 59.99534 * 22 21 20 43 43 H 1.09000 * 109.47254 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.97065 * 179.97438 * 23 8 7 45 45 H 1.08000 * 120.02384 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9096 2.3451 1.0782 6 6 3.6632 3.4643 0.2964 7 6 4.4573 4.5869 0.4297 8 6 5.5033 4.5918 1.3339 9 6 6.3714 5.8157 1.4730 10 7 7.5015 5.7233 0.5391 11 6 8.4934 6.7731 0.8073 12 6 9.7842 6.4355 0.1068 13 1 9.8594 5.5328 -0.4814 14 6 10.8694 7.2790 0.2166 15 7 11.9960 6.9841 -0.3944 16 14 10.7393 8.8406 1.2334 17 1 11.1354 8.5530 2.6354 18 1 11.6401 9.8765 0.6672 19 1 9.3389 9.3339 1.2061 20 6 7.0391 5.7795 -0.8541 21 6 6.3644 7.1280 -1.1135 22 6 5.8295 7.1634 -2.5464 23 6 5.7545 3.4755 2.1101 24 6 4.9601 2.3524 1.9843 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4868 -0.9927 30 1 2.8490 3.4594 -0.4131 31 1 4.2634 5.4598 -0.1760 32 1 5.7843 6.7055 1.2459 33 1 6.7481 5.8798 2.4939 34 1 8.1196 7.7287 0.4395 35 1 8.6696 6.8409 1.8809 36 1 12.7595 7.5774 -0.3167 37 1 7.8908 5.6645 -1.5246 38 1 6.3250 4.9756 -1.0326 39 1 5.5390 7.2618 -0.4141 40 1 7.0900 7.9297 -0.9766 41 1 6.6548 7.0297 -3.2457 42 1 5.1039 6.3617 -2.6833 43 1 5.3484 8.1239 -2.7310 44 1 6.5724 3.4817 2.8153 45 1 5.1570 1.4806 2.5905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204299970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:45 Heat of formation + Delta-G solvation = 9.927051 kcal Electronic energy + Delta-G solvation = -22680.599914 eV Core-core repulsion = 19471.018996 eV Total energy + Delta-G solvation = -3209.580918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19569 -38.43852 -36.76344 -34.36835 -32.79730 -32.26416 -30.94212 -30.46071 -27.70159 -26.85724 -25.88221 -23.57625 -22.65957 -22.03375 -21.06734 -20.23945 -19.15056 -18.19116 -16.73242 -16.55070 -15.98599 -15.37564 -15.13698 -15.00106 -14.44129 -14.30192 -14.07033 -13.82596 -13.56720 -13.24670 -13.13370 -12.78921 -12.61971 -12.36751 -11.88268 -11.69695 -11.50405 -11.40752 -11.29885 -11.15249 -10.98771 -10.83849 -10.65503 -10.52367 -10.32816 -9.89334 -9.85229 -9.83876 -9.27466 -8.83404 -8.54196 -7.99428 -7.23976 -6.02542 -3.98886 1.48978 1.55480 1.69936 3.23709 3.28711 3.36435 3.37422 3.87586 4.43261 4.48521 4.66623 4.86169 4.91970 4.99726 5.01028 5.09975 5.18970 5.30190 5.38336 5.42322 5.44093 5.52862 5.55943 5.73434 5.75398 5.86906 6.00574 6.04762 6.12389 6.18238 6.22031 6.24003 6.30755 6.38463 6.44504 6.48137 6.54282 6.81290 6.89275 6.91227 6.97021 7.06265 7.42556 7.64135 7.93752 8.07740 8.69565 9.07912 9.59436 11.10829 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.003218 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.584054 B = 8698.510634 C = 9160.786177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.087 3.913 4 O -0.315 6.315 5 C 0.117 3.883 6 C -0.210 4.210 7 C -0.075 4.075 8 C -0.096 4.096 9 C 0.086 3.914 10 N -0.518 5.518 11 C 0.157 3.843 12 C -0.503 4.503 13 H 0.080 0.920 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.063 3.937 21 C -0.165 4.165 22 C -0.143 4.143 23 C -0.059 4.059 24 C -0.152 4.152 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.036 0.964 33 H 0.075 0.925 34 H -0.003 1.003 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.131 0.869 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.905 -7.943 1.016 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C 0.012 3.988 4 O -0.229 6.229 5 C 0.073 3.927 6 C -0.229 4.229 7 C -0.094 4.094 8 C -0.096 4.096 9 C -0.042 4.042 10 N -0.241 5.241 11 C 0.031 3.969 12 C -0.541 4.541 13 H 0.098 0.902 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.700 3.300 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.066 4.066 21 C -0.204 4.204 22 C -0.201 4.201 23 C -0.078 4.078 24 C -0.170 4.170 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.015 0.985 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.149 0.851 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.454 -8.507 1.173 23.109 hybrid contribution -0.378 1.805 0.152 1.850 sum -21.832 -6.702 1.325 22.876 Atomic orbital electron populations 1.23872 0.95434 1.02495 0.99450 1.22706 0.95651 0.97944 1.00766 1.21774 0.88038 0.96521 0.92482 1.86054 1.42168 1.36161 1.58551 1.18932 0.91902 0.85868 0.96037 1.21111 1.03745 0.94511 1.03552 1.20874 0.94147 0.97405 0.96930 1.19825 0.96060 0.96640 0.97101 1.21080 0.92016 0.92975 0.98145 1.62210 1.10314 1.49699 1.01828 1.20267 0.91550 0.88654 0.96407 1.21016 0.93659 1.08987 1.30460 0.90199 1.24888 0.95272 0.97654 0.95550 1.69890 1.02461 1.37894 1.43827 0.86909 0.78223 0.83935 0.80960 1.20206 1.21289 1.19313 1.22127 0.99210 0.94287 0.90935 1.22208 1.00328 1.01504 0.96403 1.21653 1.00683 1.00471 0.97314 1.20893 0.97312 0.91353 0.98240 1.20388 0.95881 0.99912 1.00841 0.88278 0.87508 0.86253 0.91651 0.91059 0.86060 0.86084 0.94573 0.90651 0.98549 0.96134 0.92739 0.89826 0.92206 0.92919 0.91025 0.92490 0.93413 0.93578 0.85099 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.31 29.01 0.42 -0.69 16 2 C -0.15 -1.20 9.89 -36.03 -0.36 -1.56 16 3 C 0.09 0.80 5.15 36.00 0.19 0.99 16 4 O -0.32 -3.93 10.12 -19.44 -0.20 -4.13 16 5 C 0.12 1.57 6.69 -39.22 -0.26 1.31 16 6 C -0.21 -2.66 9.04 -39.43 -0.36 -3.02 16 7 C -0.07 -1.03 7.91 -39.60 -0.31 -1.34 16 8 C -0.10 -1.45 4.89 -104.60 -0.51 -1.96 16 9 C 0.09 1.45 4.91 -4.98 -0.02 1.42 16 10 N -0.52 -10.62 4.65 -237.52 -1.11 -11.72 16 11 C 0.16 3.73 3.65 -4.98 -0.02 3.71 16 12 C -0.50 -14.17 9.12 -34.44 -0.31 -14.48 16 13 H 0.08 2.48 7.71 -52.48 -0.40 2.07 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 16 Si 0.87 21.39 27.46 -169.99 -4.67 16.72 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.31 6.55 56.52 0.37 -5.94 16 20 C 0.06 1.18 4.83 -3.82 -0.02 1.16 16 21 C -0.17 -2.74 5.14 -26.73 -0.14 -2.88 16 22 C -0.14 -1.99 9.91 37.15 0.37 -1.63 16 23 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 24 C -0.15 -2.07 9.99 -39.44 -0.39 -2.46 16 25 H 0.10 0.54 7.90 -52.49 -0.41 0.13 16 26 H 0.11 0.52 8.06 -52.48 -0.42 0.10 16 27 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.07 0.54 7.40 -51.93 -0.38 0.15 16 29 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 30 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 31 H 0.12 1.55 7.20 -52.49 -0.38 1.17 16 32 H 0.04 0.58 5.97 -51.93 -0.31 0.27 16 33 H 0.08 1.24 7.81 -51.93 -0.41 0.84 16 34 H 0.00 -0.07 4.95 -51.93 -0.26 -0.33 16 35 H 0.02 0.49 7.24 -51.93 -0.38 0.11 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 1.79 7.20 -51.93 -0.37 1.42 16 38 H 0.06 1.04 5.99 -51.93 -0.31 0.72 16 39 H 0.05 0.81 5.57 -51.93 -0.29 0.52 16 40 H 0.07 1.36 6.33 -51.93 -0.33 1.04 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -30.90 357.72 -9.11 -40.01 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.09 Total: 1.41 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -2.22 Total: -20.83 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.33 Total: -38.57 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.20 Total: -4.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.90 -9.11 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204299970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.933 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds