Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99663 * 2 1 4 4 O 1.42895 * 109.47087 * 134.99970 * 3 2 1 5 5 C 1.35905 * 117.00146 * 179.97438 * 4 3 2 6 6 C 1.38732 * 120.05302 * 359.72939 * 5 4 3 7 7 C 1.38145 * 119.94275 * 179.74606 * 6 5 4 8 8 C 1.38268 * 120.05499 * 0.49877 * 7 6 5 9 9 C 1.50695 * 119.94215 * 179.74585 * 8 7 6 10 10 N 1.46897 * 109.47637 * 270.02729 * 9 8 7 11 11 C 1.46898 * 111.00307 * 190.00450 * 10 9 8 12 12 C 1.50695 * 109.47193 * 164.74097 * 11 10 9 13 13 H 1.08004 * 120.00388 * 0.16294 * 12 11 10 14 14 C 1.37880 * 120.00329 * 180.16962 * 12 11 10 15 15 N 1.31508 * 120.00522 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99655 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47321 * 90.00164 * 16 14 12 18 18 H 1.48495 * 109.47372 * 210.00019 * 16 14 12 19 19 H 1.48498 * 109.47469 * 330.00175 * 16 14 12 20 20 C 1.46901 * 111.00145 * 66.04600 * 10 9 8 21 21 C 1.53001 * 109.46939 * 62.50345 * 20 10 9 22 22 C 1.52993 * 109.47232 * 182.41595 * 21 20 10 23 23 C 1.38265 * 120.11031 * 359.77618 * 8 7 6 24 24 C 1.38142 * 120.05435 * 359.97399 * 23 8 7 25 25 H 1.08001 * 120.00614 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99690 * 180.02562 * 1 2 3 27 27 H 1.07994 * 119.99764 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47602 * 14.99487 * 3 2 1 29 29 H 1.09006 * 109.46903 * 255.00028 * 3 2 1 30 30 H 1.08000 * 120.02793 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.97028 * 180.23409 * 7 6 5 32 32 H 1.08996 * 109.47455 * 30.02982 * 9 8 7 33 33 H 1.09007 * 109.46798 * 150.02744 * 9 8 7 34 34 H 1.09003 * 109.47296 * 284.73490 * 11 10 9 35 35 H 1.08997 * 109.47461 * 44.73768 * 11 10 9 36 36 H 0.97001 * 120.00247 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47443 * 182.50117 * 20 10 9 38 38 H 1.09004 * 109.46920 * 302.50466 * 20 10 9 39 39 H 1.09007 * 109.47192 * 302.41769 * 21 20 10 40 40 H 1.08997 * 109.47366 * 62.41179 * 21 20 10 41 41 H 1.08997 * 109.47179 * 299.99979 * 22 21 20 42 42 H 1.08997 * 109.47285 * 59.99534 * 22 21 20 43 43 H 1.09000 * 109.47254 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.97065 * 179.97438 * 23 8 7 45 45 H 1.08000 * 120.02384 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9096 2.3451 1.0782 6 6 3.6632 3.4643 0.2964 7 6 4.4573 4.5869 0.4297 8 6 5.5033 4.5918 1.3339 9 6 6.3714 5.8157 1.4730 10 7 7.5015 5.7233 0.5391 11 6 8.4934 6.7731 0.8073 12 6 9.7842 6.4355 0.1068 13 1 9.8594 5.5328 -0.4814 14 6 10.8694 7.2790 0.2166 15 7 11.9960 6.9841 -0.3944 16 14 10.7393 8.8406 1.2334 17 1 11.1354 8.5530 2.6354 18 1 11.6401 9.8765 0.6672 19 1 9.3389 9.3339 1.2061 20 6 7.0391 5.7795 -0.8541 21 6 6.3644 7.1280 -1.1135 22 6 5.8295 7.1634 -2.5464 23 6 5.7545 3.4755 2.1101 24 6 4.9601 2.3524 1.9843 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4868 -0.9927 30 1 2.8490 3.4594 -0.4131 31 1 4.2634 5.4598 -0.1760 32 1 5.7843 6.7055 1.2459 33 1 6.7481 5.8798 2.4939 34 1 8.1196 7.7287 0.4395 35 1 8.6696 6.8409 1.8809 36 1 12.7595 7.5774 -0.3167 37 1 7.8908 5.6645 -1.5246 38 1 6.3250 4.9756 -1.0326 39 1 5.5390 7.2618 -0.4141 40 1 7.0900 7.9297 -0.9766 41 1 6.6548 7.0297 -3.2457 42 1 5.1039 6.3617 -2.6833 43 1 5.3484 8.1239 -2.7310 44 1 6.5724 3.4817 2.8153 45 1 5.1570 1.4806 2.5905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204299970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = -8.229903 kcal Electronic energy + Delta-G solvation = -22681.387259 eV Core-core repulsion = 19471.018996 eV Total energy + Delta-G solvation = -3210.368263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19733 -39.67746 -37.99719 -35.03505 -34.76951 -33.68953 -32.03245 -31.78177 -29.38766 -27.80619 -27.08505 -25.11391 -23.66659 -23.57697 -22.30563 -20.87006 -20.64400 -19.12498 -18.86030 -17.41566 -16.89284 -16.70985 -16.68159 -16.18862 -15.94233 -15.40256 -15.31367 -15.24383 -14.54939 -14.46258 -14.30438 -14.24666 -13.64884 -13.47239 -13.38577 -13.07005 -12.91836 -12.69752 -12.58144 -12.33769 -12.22539 -12.08008 -12.02481 -11.86281 -11.75187 -11.63952 -11.41065 -11.30380 -10.74343 -10.42688 -9.88067 -9.09517 -8.78232 -8.25398 -6.27404 0.45026 0.47456 1.14715 1.35306 1.36394 1.46853 2.35757 2.42970 2.77310 3.08180 3.50142 3.80186 3.93586 3.94555 4.03628 4.10472 4.12469 4.15396 4.28596 4.38054 4.46773 4.49000 4.52547 4.61723 4.65940 4.72186 4.81827 4.83703 4.97020 4.98094 5.03481 5.10784 5.15235 5.25009 5.34234 5.36758 5.40684 5.49554 5.59552 5.61975 5.66818 5.78982 5.87080 6.04277 6.45077 6.48824 6.71133 6.78764 7.35487 8.91707 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.003218 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.584054 B = 8698.510634 C = 9160.786177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.178 4.178 3 C 0.080 3.920 4 O -0.328 6.328 5 C 0.115 3.885 6 C -0.207 4.207 7 C -0.075 4.075 8 C -0.114 4.114 9 C 0.091 3.909 10 N -0.538 5.538 11 C 0.168 3.832 12 C -0.507 4.507 13 H 0.032 0.968 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.945 3.055 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.248 1.248 20 C 0.069 3.931 21 C -0.158 4.158 22 C -0.139 4.139 23 C -0.070 4.070 24 C -0.162 4.162 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.001 0.999 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.190 -7.189 1.497 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C 0.006 3.994 4 O -0.242 6.242 5 C 0.070 3.930 6 C -0.226 4.226 7 C -0.094 4.094 8 C -0.115 4.115 9 C -0.037 4.037 10 N -0.261 5.261 11 C 0.042 3.958 12 C -0.546 4.546 13 H 0.050 0.950 14 C -0.191 4.191 15 N -0.592 5.592 16 Si 0.769 3.231 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.172 1.172 20 C -0.059 4.059 21 C -0.196 4.196 22 C -0.197 4.197 23 C -0.088 4.088 24 C -0.181 4.181 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.019 0.981 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.148 0.852 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.775 -7.771 1.652 26.017 hybrid contribution 0.542 1.376 -0.058 1.480 sum -24.233 -6.395 1.594 25.113 Atomic orbital electron populations 1.24116 0.94884 1.03774 0.96731 1.22697 0.96259 0.97340 1.03266 1.22025 0.87504 0.97795 0.92058 1.86052 1.42832 1.35860 1.59505 1.19086 0.91762 0.86427 0.95727 1.21367 1.04034 0.93648 1.03514 1.21020 0.93655 0.98235 0.96460 1.19740 0.96888 0.96214 0.98628 1.21065 0.91016 0.94507 0.97072 1.62057 1.11900 1.48715 1.03430 1.19997 0.90478 0.89706 0.95661 1.21242 0.96099 1.07277 1.29977 0.94962 1.25833 0.94662 1.01649 0.96928 1.70057 1.03559 1.39714 1.45910 0.85745 0.79229 0.78981 0.79175 1.19112 1.20957 1.17207 1.22016 0.98092 0.96453 0.89371 1.22102 0.99999 0.98720 0.98820 1.21625 1.00717 1.02393 0.94953 1.20967 0.97646 0.91694 0.98504 1.20540 0.96142 1.00003 1.01376 0.87196 0.86019 0.86581 0.90347 0.90521 0.83404 0.84755 0.93284 0.90643 0.98100 0.95777 0.92581 0.93861 0.90486 0.90887 0.93803 0.93832 0.91330 0.91683 0.85187 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 14.31 67.78 0.97 -0.59 16 2 C -0.18 -2.47 9.89 25.64 0.25 -2.21 16 3 C 0.08 1.31 5.15 71.23 0.37 1.67 16 4 O -0.33 -7.66 10.12 -92.48 -0.94 -8.59 16 5 C 0.12 2.89 6.69 22.50 0.15 3.04 16 6 C -0.21 -4.69 9.04 22.37 0.20 -4.49 16 7 C -0.08 -1.88 7.91 22.25 0.18 -1.70 16 8 C -0.11 -3.32 4.89 -19.85 -0.10 -3.42 16 9 C 0.09 2.95 4.91 85.56 0.42 3.37 16 10 N -0.54 -22.15 4.65 -905.38 -4.21 -26.36 16 11 C 0.17 8.02 3.65 85.56 0.31 8.33 16 12 C -0.51 -29.69 9.12 25.60 0.23 -29.46 16 13 H 0.03 2.13 7.71 -2.91 -0.02 2.11 16 14 C 0.01 0.35 5.47 84.66 0.46 0.81 16 15 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 16 Si 0.95 44.28 27.46 68.60 1.88 46.16 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.25 -10.75 6.55 99.48 0.65 -10.10 16 20 C 0.07 2.59 4.83 86.30 0.42 3.00 16 21 C -0.16 -5.01 5.14 30.59 0.16 -4.85 16 22 C -0.14 -3.58 9.91 71.98 0.71 -2.87 16 23 C -0.07 -1.98 9.69 22.25 0.22 -1.77 16 24 C -0.16 -4.29 9.99 22.36 0.22 -4.07 16 25 H 0.11 0.84 7.90 -2.91 -0.02 0.82 16 26 H 0.12 0.83 8.06 -2.91 -0.02 0.80 16 27 H 0.12 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.08 1.05 7.40 -2.39 -0.02 1.03 16 29 H 0.08 1.14 7.65 -2.38 -0.02 1.12 16 30 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 31 H 0.13 2.95 7.20 -2.91 -0.02 2.93 16 32 H 0.05 1.46 5.97 -2.39 -0.01 1.45 16 33 H 0.08 2.42 7.81 -2.38 -0.02 2.40 16 34 H 0.00 0.07 4.95 -2.39 -0.01 0.06 16 35 H 0.02 1.13 7.24 -2.39 -0.02 1.11 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.04 1.95 7.20 -2.39 -0.02 1.93 16 38 H 0.08 2.60 5.99 -2.38 -0.01 2.59 16 39 H 0.07 2.02 5.57 -2.38 -0.01 2.01 16 40 H 0.04 1.64 6.33 -2.39 -0.02 1.62 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -69.05 357.72 3.11 -65.93 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.90 Total: 18.10 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 5.18 Total: -35.19 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -3.91 Total: -86.42 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.94 Total: -8.59 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -69.05 3.11 -65.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204299970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.703 kcal (2) G-P(sol) polarization free energy of solvation -69.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds