Wall clock time and date at job start Tue Mar 31 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47217 * 2 1 4 4 O 1.20757 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99957 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47091 * 59.99600 * 5 3 2 7 7 C 1.52996 * 109.47052 * 300.00036 * 5 3 2 8 8 C 1.52997 * 109.47017 * 179.97438 * 5 3 2 9 9 N 1.46499 * 109.47170 * 179.97438 * 8 5 3 10 10 C 1.36934 * 120.00570 * 270.00669 * 9 8 5 11 11 H 1.07993 * 120.00698 * 141.95399 * 10 9 8 12 12 C 1.38819 * 119.99561 * 321.95580 * 10 9 8 13 13 N 1.31617 * 119.99851 * 339.27363 * 12 10 9 14 14 Si 1.86802 * 119.99768 * 159.27565 * 12 10 9 15 15 H 1.48495 * 109.47399 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46848 * 120.00000 * 14 12 10 17 17 H 1.48503 * 109.46716 * 239.99974 * 14 12 10 18 18 C 1.46505 * 119.99921 * 89.99919 * 9 8 5 19 19 C 1.50699 * 109.46792 * 95.36495 * 18 9 8 20 20 C 1.38236 * 119.99696 * 86.03639 * 19 18 9 21 21 C 1.38232 * 120.00110 * 179.97438 * 20 19 18 22 22 C 1.38236 * 119.99918 * 359.97058 * 21 20 19 23 23 C 1.38238 * 120.00123 * 0.28180 * 22 21 20 24 24 C 1.38236 * 120.00285 * 266.01034 * 19 18 9 25 25 H 1.09000 * 109.46960 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.46682 * 59.99849 * 1 2 3 27 27 H 1.08992 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46960 * 239.99869 * 2 1 3 29 29 H 1.08995 * 109.47126 * 120.00367 * 2 1 3 30 30 H 1.09006 * 109.47000 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.47769 * 300.00126 * 6 5 3 32 32 H 1.09011 * 109.46992 * 60.00398 * 6 5 3 33 33 H 1.08996 * 109.47074 * 300.00222 * 7 5 3 34 34 H 1.08999 * 109.47249 * 59.99787 * 7 5 3 35 35 H 1.08997 * 109.47326 * 180.02562 * 7 5 3 36 36 H 1.08998 * 109.46757 * 60.00545 * 8 5 3 37 37 H 1.08995 * 109.47238 * 300.00157 * 8 5 3 38 38 H 0.97005 * 119.99895 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.47228 * 335.36961 * 18 9 8 40 40 H 1.08992 * 109.47269 * 215.36773 * 18 9 8 41 41 H 1.07997 * 120.00227 * 359.97034 * 20 19 18 42 42 H 1.07998 * 120.00411 * 179.97438 * 21 20 19 43 43 H 1.08008 * 120.00476 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.00150 * 179.72397 * 23 22 21 45 45 H 1.07999 * 120.00204 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2477 2.3387 -0.0005 5 6 3.5141 1.6962 -0.0006 6 6 4.1467 1.0803 -1.2501 7 6 4.1477 1.0800 1.2483 8 6 3.7519 3.2075 -0.0011 9 7 5.1922 3.4752 -0.0011 10 6 5.8654 3.6007 1.1848 11 1 6.8633 3.1999 1.2844 12 6 5.2650 4.2430 2.2591 13 7 4.2627 5.0711 2.0541 14 14 5.8797 3.9319 3.9954 15 1 7.0073 2.9665 3.9559 16 1 6.3425 5.2102 4.5930 17 1 4.7774 3.3714 4.8177 18 6 5.9125 3.6086 -1.2698 19 6 6.0141 5.0662 -1.6389 20 6 7.0523 5.8335 -1.1447 21 6 7.1458 7.1704 -1.4836 22 6 6.2014 7.7398 -2.3172 23 6 5.1603 6.9737 -2.8073 24 6 5.0694 5.6357 -2.4720 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.2184 1.2799 -1.2508 31 1 3.9773 0.0036 -1.2503 32 1 3.6953 1.5193 -2.1400 33 1 3.6970 1.5187 2.1385 34 1 3.9783 0.0033 1.2482 35 1 5.2193 1.2796 1.2481 36 1 3.3012 3.6465 0.8890 37 1 3.3005 3.6461 -0.8910 38 1 3.8429 5.5196 2.8049 39 1 5.3741 3.0726 -2.0514 40 1 6.9133 3.1897 -1.1652 41 1 7.7903 5.3886 -0.4937 42 1 7.9566 7.7701 -1.0972 43 1 6.2747 8.7842 -2.5824 44 1 4.4200 7.4197 -3.4549 45 1 4.2583 5.0362 -2.8582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208920220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:09 Heat of formation + Delta-G solvation = -5.359257 kcal Electronic energy + Delta-G solvation = -24170.649664 eV Core-core repulsion = 20960.405881 eV Total energy + Delta-G solvation = -3210.243782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.55095 -38.43062 -36.33992 -33.60692 -32.34756 -31.94063 -30.12007 -29.69880 -26.89153 -26.01188 -25.24388 -24.81734 -22.33145 -21.78945 -20.75878 -19.92714 -17.84385 -16.59313 -16.06138 -15.60551 -15.12840 -14.96567 -14.55590 -14.34360 -14.29919 -13.81184 -13.20256 -13.13714 -12.98821 -12.67825 -12.46571 -12.14013 -12.05729 -11.87446 -11.72474 -11.57639 -11.37116 -11.29532 -10.93728 -10.84408 -10.76893 -10.70702 -10.59068 -10.28402 -10.06561 -9.94822 -9.89434 -9.70296 -8.76562 -8.48969 -8.13897 -7.91308 -6.57918 -5.78885 -3.37281 2.16697 2.19794 2.55536 3.31997 3.41853 3.42570 4.37021 4.52980 4.61447 5.19782 5.24715 5.32023 5.42373 5.55716 5.57676 5.61757 5.68973 5.74220 5.79129 5.86036 5.90807 5.92774 6.07048 6.13552 6.18341 6.22438 6.29253 6.29552 6.40177 6.40842 6.56138 6.60471 6.80163 6.82900 6.84395 6.87700 7.02821 7.20060 7.24143 7.25255 7.55535 7.74536 7.80055 7.84100 8.10204 8.50106 9.15802 9.77260 10.36774 11.19664 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.006573 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.934997 B = 4259.127309 C = 5586.935221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.178 4.178 3 C 0.364 3.636 4 O -0.454 6.454 5 C -0.130 4.130 6 C -0.129 4.129 7 C -0.119 4.119 8 C 0.170 3.830 9 N -0.566 5.566 10 C -0.259 4.259 11 H 0.062 0.938 12 C 0.021 3.979 13 N -0.871 5.871 14 Si 0.886 3.114 15 H -0.274 1.274 16 H -0.290 1.290 17 H -0.288 1.288 18 C 0.170 3.830 19 C -0.070 4.070 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.026 0.974 38 H 0.254 0.746 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -6.852 -6.945 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.216 4.216 3 C 0.238 3.762 4 O -0.327 6.327 5 C -0.133 4.133 6 C -0.186 4.186 7 C -0.176 4.176 8 C 0.043 3.957 9 N -0.284 5.284 10 C -0.389 4.389 11 H 0.080 0.920 12 C -0.181 4.181 13 N -0.512 5.512 14 Si 0.715 3.285 15 H -0.199 1.199 16 H -0.217 1.217 17 H -0.214 1.214 18 C 0.044 3.956 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.144 4.144 22 C -0.162 4.162 23 C -0.146 4.146 24 C -0.136 4.136 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.571 -6.273 -6.808 9.275 hybrid contribution 0.142 0.097 1.138 1.151 sum -0.429 -6.176 -5.670 8.395 Atomic orbital electron populations 1.21578 0.94557 1.01008 1.02841 1.22104 0.97476 0.97840 1.04136 1.24849 0.91717 0.89941 0.69694 1.90349 1.59142 1.47869 1.35316 1.21846 0.91370 1.02936 0.97133 1.21823 1.02328 0.98631 0.95829 1.21666 1.03822 0.96691 0.95415 1.20753 0.84799 0.87667 1.02452 1.43887 1.04460 1.79907 1.00107 1.18933 1.00892 1.31040 0.88046 0.92047 1.25209 0.98611 0.95397 0.98891 1.70014 1.25124 1.26005 1.30031 0.86509 0.78507 0.77830 0.85677 1.19898 1.21689 1.21425 1.20223 0.96770 0.89015 0.89548 1.20983 0.93103 0.99991 0.93258 1.20919 0.98541 0.93552 0.98274 1.21004 0.99110 0.95498 0.98801 1.20855 0.96257 0.98842 1.00202 1.20928 0.98121 0.94483 1.01025 1.20904 0.98589 0.94891 0.99187 0.92329 0.92441 0.92711 0.88997 0.88840 0.90649 0.93724 0.93709 0.93339 0.94888 0.89252 0.88263 0.95545 0.93544 0.93221 0.93370 0.86679 0.87411 0.87553 0.87485 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.20 37.16 0.34 -1.44 16 2 C -0.18 -2.33 5.69 -27.88 -0.16 -2.49 16 3 C 0.36 6.41 5.97 -29.03 -0.17 6.24 16 4 O -0.45 -9.63 15.61 6.00 0.09 -9.54 16 5 C -0.13 -2.36 0.70 -155.66 -0.11 -2.47 16 6 C -0.13 -1.96 7.02 37.16 0.26 -1.70 16 7 C -0.12 -2.14 7.65 37.16 0.28 -1.86 16 8 C 0.17 3.85 3.67 -4.04 -0.01 3.84 16 9 N -0.57 -12.73 1.93 -174.62 -0.34 -13.07 16 10 C -0.26 -6.41 7.27 -15.06 -0.11 -6.52 16 11 H 0.06 1.52 7.91 -52.49 -0.42 1.11 16 12 C 0.02 0.55 4.97 -17.43 -0.09 0.46 16 13 N -0.87 -24.65 11.46 55.49 0.64 -24.02 16 14 Si 0.89 20.76 29.60 -169.99 -5.03 15.72 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 C 0.17 3.36 4.54 -5.19 -0.02 3.34 16 19 C -0.07 -1.43 5.43 -104.62 -0.57 -1.99 16 20 C -0.09 -1.88 9.72 -39.58 -0.38 -2.27 16 21 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 22 C -0.14 -2.50 10.05 -39.58 -0.40 -2.89 16 23 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 24 C -0.12 -2.26 9.69 -39.58 -0.38 -2.64 16 25 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 26 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.02 7.38 -51.93 -0.38 0.63 16 29 H 0.09 1.11 7.38 -51.93 -0.38 0.73 16 30 H 0.07 1.19 6.07 -51.93 -0.32 0.88 16 31 H 0.04 0.56 7.28 -51.93 -0.38 0.18 16 32 H 0.04 0.66 8.07 -51.92 -0.42 0.24 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.48 7.28 -51.93 -0.38 0.10 16 35 H 0.09 1.75 6.29 -51.93 -0.33 1.42 16 36 H 0.10 2.68 5.48 -51.93 -0.28 2.40 16 37 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 39 H 0.05 0.89 6.21 -51.93 -0.32 0.56 16 40 H 0.05 0.91 8.05 -51.93 -0.42 0.50 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 45 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -29.07 358.07 -8.94 -38.00 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.38 Total: 5.27 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.32 Total: -17.77 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.30 Total: -37.09 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.07 -8.94 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208920220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.645 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds