Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 N 1.46907 * 109.46919 * 178.41262 * 3 2 1 5 5 C 1.46905 * 110.99550 * 295.87207 * 4 3 2 6 6 C 1.50703 * 109.47167 * 288.42774 * 5 4 3 7 7 H 1.07996 * 119.99914 * 0.69780 * 6 5 4 8 8 C 1.37878 * 119.99565 * 180.69219 * 6 5 4 9 9 N 1.31515 * 119.99688 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00462 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46982 * 89.99640 * 10 8 6 12 12 H 1.48496 * 109.47330 * 209.99769 * 10 8 6 13 13 H 1.48497 * 109.46990 * 330.00162 * 10 8 6 14 14 C 1.46894 * 111.00022 * 59.82547 * 4 3 2 15 15 C 1.53001 * 109.47227 * 66.05005 * 14 4 3 16 16 C 1.50696 * 109.47372 * 179.97438 * 15 14 4 17 17 C 1.38288 * 120.11699 * 89.99767 * 16 15 14 18 18 C 1.37931 * 120.35397 * 180.17539 * 17 16 15 19 19 C 1.39287 * 120.24222 * 0.06144 * 18 17 16 20 20 C 1.38977 * 118.85451 * 359.59544 * 19 18 17 21 21 C 1.37667 * 120.78006 * 0.54607 * 20 19 18 22 22 C 1.51654 * 106.98171 * 180.57368 * 20 19 18 23 23 C 1.54705 * 101.93654 * 15.71101 * 22 20 19 24 24 O 1.36129 * 129.87927 * 179.56801 * 19 18 17 25 25 H 1.09000 * 109.46926 * 300.00072 * 1 2 3 26 26 H 1.09000 * 109.46627 * 59.99912 * 1 2 3 27 27 H 1.08995 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47098 * 239.99161 * 2 1 3 29 29 H 1.09007 * 109.46958 * 120.00179 * 2 1 3 30 30 H 1.08995 * 109.47136 * 58.40961 * 3 2 1 31 31 H 1.08996 * 109.46985 * 298.40505 * 3 2 1 32 32 H 1.08997 * 109.47215 * 48.43620 * 5 4 3 33 33 H 1.09001 * 109.46742 * 168.42720 * 5 4 3 34 34 H 0.96997 * 120.00425 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.47616 * 306.04319 * 14 4 3 36 36 H 1.09003 * 109.46711 * 186.04710 * 14 4 3 37 37 H 1.09003 * 109.47383 * 59.99171 * 15 14 4 38 38 H 1.09004 * 109.46782 * 299.99994 * 15 14 4 39 39 H 1.08005 * 119.82560 * 0.19682 * 17 16 15 40 40 H 1.07995 * 119.88020 * 180.02562 * 18 17 16 41 41 H 1.07999 * 119.98656 * 179.62378 * 21 20 19 42 42 H 1.08993 * 110.94396 * 257.54053 * 22 20 19 43 43 H 1.09000 * 110.94369 * 133.88070 * 22 20 19 44 44 H 1.09002 * 110.74975 * 92.94748 * 23 22 20 45 45 H 1.08998 * 110.75165 * 216.11446 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 0.0384 5 6 4.0025 0.8555 1.2912 6 6 3.7333 1.8041 2.4309 7 1 3.2341 2.7436 2.2450 8 6 4.1241 1.4724 3.7108 9 7 3.8887 2.3000 4.7055 10 14 4.9879 -0.1524 4.0322 11 1 6.4553 0.0323 3.8985 12 1 4.6707 -0.6184 5.4060 13 1 4.5244 -1.1626 3.0475 14 6 4.0657 0.7423 -1.1266 15 6 3.7349 1.5255 -2.3986 16 6 4.3069 0.8076 -3.5937 17 6 3.5527 -0.1410 -4.2598 18 6 4.0727 -0.8037 -5.3520 19 6 5.3639 -0.5237 -5.7931 20 6 6.1092 0.4368 -5.1197 21 6 5.5887 1.0947 -4.0281 22 6 7.4479 0.5338 -5.8255 23 6 7.1551 -0.1800 -7.1664 24 8 6.0672 -1.0572 -6.8294 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6537 1.9645 0.8753 31 1 1.7003 1.9479 -0.9039 32 1 3.4912 -0.0892 1.4762 33 1 5.0751 0.6784 1.2115 34 1 4.1640 2.0669 5.6059 35 1 3.6331 -0.2560 -1.1917 36 1 5.1476 0.6631 -1.0197 37 1 4.1676 2.5239 -2.3335 38 1 2.6530 1.6048 -2.5054 39 1 2.5509 -0.3639 -3.9233 40 1 3.4768 -1.5428 -5.8668 41 1 6.1814 1.8345 -3.5106 42 1 8.2223 0.0092 -5.2659 43 1 7.7268 1.5745 -5.9908 44 1 6.8504 0.5382 -7.9277 45 1 8.0238 -0.7480 -7.4993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209146022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -11.824704 kcal Electronic energy + Delta-G solvation = -22759.687539 eV Core-core repulsion = 19549.163394 eV Total energy + Delta-G solvation = -3210.524145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19388 -38.42149 -37.26524 -33.05623 -32.78614 -32.76068 -31.47027 -29.41101 -28.56600 -26.90560 -25.13070 -23.59482 -22.61444 -22.08329 -21.91155 -20.56520 -18.99016 -17.52052 -16.85402 -16.69906 -16.32640 -15.55476 -15.18610 -14.81102 -14.23876 -14.15727 -13.87616 -13.42760 -13.38607 -13.34220 -13.14151 -12.88575 -12.61255 -12.41288 -12.12684 -11.99068 -11.65911 -11.50141 -11.21658 -11.13598 -11.04775 -10.88382 -10.75237 -10.55945 -10.50983 -10.32618 -9.84291 -9.74591 -9.27213 -8.96039 -8.53821 -8.07006 -7.25916 -6.02790 -3.98958 1.20933 1.30296 3.09202 3.29156 3.36782 3.38686 3.60478 4.21600 4.36190 4.43692 4.68967 4.72242 4.78647 5.02610 5.12308 5.18742 5.28804 5.32937 5.37718 5.44492 5.45972 5.51349 5.53928 5.56975 5.64536 5.79777 5.91599 5.96987 6.02904 6.13484 6.24632 6.26291 6.29885 6.34279 6.41751 6.45446 6.53802 6.56336 6.70044 6.82872 6.97230 7.06388 7.10432 7.65107 7.94194 8.09367 8.69646 9.07128 9.59590 11.10593 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003524 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.330233 B = 7942.724818 C = 8769.829252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.063 3.937 4 N -0.526 5.526 5 C 0.158 3.842 6 C -0.503 4.503 7 H 0.080 0.920 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.055 3.945 15 C -0.073 4.073 16 C -0.096 4.096 17 C -0.083 4.083 18 C -0.136 4.136 19 C 0.091 3.909 20 C -0.174 4.174 21 C -0.065 4.065 22 C -0.110 4.110 23 C 0.052 3.948 24 O -0.309 6.309 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.058 0.942 32 H -0.004 1.004 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.030 0.970 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -5.068 -22.264 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.066 4.066 4 N -0.248 5.248 5 C 0.032 3.968 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.073 4.073 15 C -0.111 4.111 16 C -0.096 4.096 17 C -0.101 4.101 18 C -0.155 4.155 19 C 0.047 3.953 20 C -0.175 4.175 21 C -0.083 4.083 22 C -0.147 4.147 23 C -0.023 4.023 24 O -0.223 6.223 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.268 -4.750 -22.200 22.815 hybrid contribution 0.440 -1.657 0.391 1.759 sum 2.708 -6.407 -21.808 22.891 Atomic orbital electron populations 1.21654 0.96188 1.00746 1.01542 1.22194 0.95903 1.00502 1.01818 1.22128 0.88172 0.94362 1.01927 1.62175 1.06614 1.53873 1.02126 1.20235 0.94608 0.94426 0.87536 1.21030 1.38238 1.05076 0.89817 0.90179 1.24888 0.95770 0.96551 0.96156 1.69891 1.47877 1.36261 1.00096 0.86910 0.80494 0.85008 0.77634 1.20221 1.21251 1.19326 1.22100 0.99790 0.95054 0.90381 1.20575 1.00801 0.99068 0.90624 1.19894 0.94167 0.97908 0.97663 1.20810 0.99956 0.95212 0.94141 1.20210 0.92098 1.03555 0.99588 1.19556 0.92543 0.94168 0.89076 1.20727 0.96040 1.01403 0.99283 1.20244 0.94840 0.98834 0.94428 1.21782 0.95442 1.02523 0.94983 1.23792 0.89006 0.92662 0.96843 1.86795 1.41764 1.44702 1.49050 0.92499 0.93304 0.93626 0.92807 0.91271 0.89721 0.92380 0.98649 0.96232 0.92742 0.95229 0.91603 0.90201 0.90953 0.85214 0.85703 0.85555 0.89207 0.89096 0.90712 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 37.16 0.37 -1.63 16 2 C -0.17 -2.72 5.28 -26.73 -0.14 -2.87 16 3 C 0.06 1.14 4.97 -3.82 -0.02 1.12 16 4 N -0.53 -10.66 4.66 -236.07 -1.10 -11.76 16 5 C 0.16 3.79 3.67 -4.97 -0.02 3.77 16 6 C -0.50 -14.19 9.09 -34.44 -0.31 -14.51 16 7 H 0.08 2.46 7.72 -52.49 -0.41 2.06 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 10 Si 0.87 21.57 27.45 -169.99 -4.67 16.91 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.42 6.56 56.52 0.37 -6.04 16 14 C 0.06 0.92 4.69 -3.83 -0.02 0.91 16 15 C -0.07 -1.00 5.28 -27.88 -0.15 -1.15 16 16 C -0.10 -1.22 5.14 -104.57 -0.54 -1.76 16 17 C -0.08 -0.99 9.68 -39.68 -0.38 -1.37 16 18 C -0.14 -1.61 10.06 -39.30 -0.40 -2.01 16 19 C 0.09 1.14 7.04 -38.92 -0.27 0.87 16 20 C -0.17 -2.04 6.27 -104.09 -0.65 -2.70 16 21 C -0.07 -0.80 9.69 -39.75 -0.39 -1.19 16 22 C -0.11 -0.94 7.12 -26.52 -0.19 -1.13 16 23 C 0.05 0.41 8.01 38.05 0.30 0.72 16 24 O -0.31 -3.65 11.10 -20.15 -0.22 -3.88 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.82 6.36 -51.93 -0.33 0.49 16 29 H 0.07 1.32 6.21 -51.92 -0.32 1.00 16 30 H 0.08 1.76 7.15 -51.93 -0.37 1.39 16 31 H 0.06 0.92 6.48 -51.93 -0.34 0.59 16 32 H 0.00 -0.10 5.02 -51.93 -0.26 -0.36 16 33 H 0.02 0.48 7.21 -51.93 -0.37 0.10 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.03 0.49 6.03 -51.93 -0.31 0.18 16 36 H 0.07 1.14 7.87 -51.93 -0.41 0.73 16 37 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16 39 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -31.39 353.43 -10.06 -41.46 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.27 Total: -0.12 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -2.90 Total: -21.06 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.33 Total: -38.63 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.22 Total: -3.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.39 -10.06 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209146022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.631 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds