Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 N 1.46907 * 109.46919 * 178.41262 * 3 2 1 5 5 C 1.46905 * 110.99550 * 295.87207 * 4 3 2 6 6 C 1.50703 * 109.47167 * 288.42774 * 5 4 3 7 7 H 1.07996 * 119.99914 * 0.69780 * 6 5 4 8 8 C 1.37878 * 119.99565 * 180.69219 * 6 5 4 9 9 N 1.31515 * 119.99688 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00462 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46982 * 89.99640 * 10 8 6 12 12 H 1.48496 * 109.47330 * 209.99769 * 10 8 6 13 13 H 1.48497 * 109.46990 * 330.00162 * 10 8 6 14 14 C 1.46894 * 111.00022 * 59.82547 * 4 3 2 15 15 C 1.53001 * 109.47227 * 66.05005 * 14 4 3 16 16 C 1.50696 * 109.47372 * 179.97438 * 15 14 4 17 17 C 1.38288 * 120.11699 * 89.99767 * 16 15 14 18 18 C 1.37931 * 120.35397 * 180.17539 * 17 16 15 19 19 C 1.39287 * 120.24222 * 0.06144 * 18 17 16 20 20 C 1.38977 * 118.85451 * 359.59544 * 19 18 17 21 21 C 1.37667 * 120.78006 * 0.54607 * 20 19 18 22 22 C 1.51654 * 106.98171 * 180.57368 * 20 19 18 23 23 C 1.54705 * 101.93654 * 15.71101 * 22 20 19 24 24 O 1.36129 * 129.87927 * 179.56801 * 19 18 17 25 25 H 1.09000 * 109.46926 * 300.00072 * 1 2 3 26 26 H 1.09000 * 109.46627 * 59.99912 * 1 2 3 27 27 H 1.08995 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47098 * 239.99161 * 2 1 3 29 29 H 1.09007 * 109.46958 * 120.00179 * 2 1 3 30 30 H 1.08995 * 109.47136 * 58.40961 * 3 2 1 31 31 H 1.08996 * 109.46985 * 298.40505 * 3 2 1 32 32 H 1.08997 * 109.47215 * 48.43620 * 5 4 3 33 33 H 1.09001 * 109.46742 * 168.42720 * 5 4 3 34 34 H 0.96997 * 120.00425 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.47616 * 306.04319 * 14 4 3 36 36 H 1.09003 * 109.46711 * 186.04710 * 14 4 3 37 37 H 1.09003 * 109.47383 * 59.99171 * 15 14 4 38 38 H 1.09004 * 109.46782 * 299.99994 * 15 14 4 39 39 H 1.08005 * 119.82560 * 0.19682 * 17 16 15 40 40 H 1.07995 * 119.88020 * 180.02562 * 18 17 16 41 41 H 1.07999 * 119.98656 * 179.62378 * 21 20 19 42 42 H 1.08993 * 110.94396 * 257.54053 * 22 20 19 43 43 H 1.09000 * 110.94369 * 133.88070 * 22 20 19 44 44 H 1.09002 * 110.74975 * 92.94748 * 23 22 20 45 45 H 1.08998 * 110.75165 * 216.11446 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 0.0384 5 6 4.0025 0.8555 1.2912 6 6 3.7333 1.8041 2.4309 7 1 3.2341 2.7436 2.2450 8 6 4.1241 1.4724 3.7108 9 7 3.8887 2.3000 4.7055 10 14 4.9879 -0.1524 4.0322 11 1 6.4553 0.0323 3.8985 12 1 4.6707 -0.6184 5.4060 13 1 4.5244 -1.1626 3.0475 14 6 4.0657 0.7423 -1.1266 15 6 3.7349 1.5255 -2.3986 16 6 4.3069 0.8076 -3.5937 17 6 3.5527 -0.1410 -4.2598 18 6 4.0727 -0.8037 -5.3520 19 6 5.3639 -0.5237 -5.7931 20 6 6.1092 0.4368 -5.1197 21 6 5.5887 1.0947 -4.0281 22 6 7.4479 0.5338 -5.8255 23 6 7.1551 -0.1800 -7.1664 24 8 6.0672 -1.0572 -6.8294 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6537 1.9645 0.8753 31 1 1.7003 1.9479 -0.9039 32 1 3.4912 -0.0892 1.4762 33 1 5.0751 0.6784 1.2115 34 1 4.1640 2.0669 5.6059 35 1 3.6331 -0.2560 -1.1917 36 1 5.1476 0.6631 -1.0197 37 1 4.1676 2.5239 -2.3335 38 1 2.6530 1.6048 -2.5054 39 1 2.5509 -0.3639 -3.9233 40 1 3.4768 -1.5428 -5.8668 41 1 6.1814 1.8345 -3.5106 42 1 8.2223 0.0092 -5.2659 43 1 7.7268 1.5745 -5.9908 44 1 6.8504 0.5382 -7.9277 45 1 8.0238 -0.7480 -7.4993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209146022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -30.487773 kcal Electronic energy + Delta-G solvation = -22760.496830 eV Core-core repulsion = 19549.163394 eV Total energy + Delta-G solvation = -3211.333437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00011 -39.66983 -38.42917 -34.86650 -34.13333 -33.59842 -32.92377 -30.29815 -29.99767 -28.33245 -26.55449 -24.48584 -23.86128 -23.56953 -22.82703 -21.68556 -20.47266 -18.86304 -18.32004 -17.69763 -17.09135 -16.84028 -16.67700 -16.22791 -15.90648 -15.15985 -15.04634 -14.82605 -14.58342 -14.35005 -14.11715 -14.07155 -13.81469 -13.72512 -13.31598 -13.20311 -12.92471 -12.66960 -12.59747 -12.45423 -12.31902 -12.18437 -12.09354 -11.94813 -11.85114 -11.63844 -11.52872 -11.35798 -11.15503 -10.74817 -9.83200 -8.98212 -8.84861 -8.26686 -6.28193 0.32743 0.39279 1.33547 1.34407 1.44928 2.34332 2.34740 2.70463 3.06649 3.28842 3.50319 3.70129 3.94787 4.01326 4.08143 4.15972 4.17489 4.27886 4.34934 4.40362 4.47277 4.53939 4.56120 4.63146 4.67706 4.69339 4.83463 4.87648 4.89978 4.91215 5.02858 5.05480 5.10627 5.17256 5.22164 5.29530 5.33610 5.39629 5.42819 5.50227 5.59574 5.67443 5.73439 6.04009 6.24379 6.46086 6.70510 6.78023 7.34760 8.90251 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003524 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.330233 B = 7942.724818 C = 8769.829252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.158 4.158 3 C 0.065 3.935 4 N -0.543 5.543 5 C 0.169 3.831 6 C -0.507 4.507 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.949 5.949 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.253 1.253 14 C 0.060 3.940 15 C -0.059 4.059 16 C -0.107 4.107 17 C -0.084 4.084 18 C -0.145 4.145 19 C 0.077 3.923 20 C -0.184 4.184 21 C -0.076 4.076 22 C -0.109 4.109 23 C 0.047 3.953 24 O -0.327 6.327 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.086 0.914 32 H -0.003 1.003 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -6.812 -24.562 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C -0.063 4.063 4 N -0.265 5.265 5 C 0.042 3.958 6 C -0.546 4.546 7 H 0.055 0.945 8 C -0.189 4.189 9 N -0.591 5.591 10 Si 0.766 3.234 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.177 1.177 14 C -0.068 4.068 15 C -0.097 4.097 16 C -0.108 4.108 17 C -0.102 4.102 18 C -0.163 4.163 19 C 0.032 3.968 20 C -0.185 4.185 21 C -0.095 4.095 22 C -0.146 4.146 23 C -0.027 4.027 24 O -0.241 6.241 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.014 0.986 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.784 -6.491 -24.530 25.527 hybrid contribution 0.268 -1.026 1.016 1.468 sum 3.052 -7.517 -23.515 24.875 Atomic orbital electron populations 1.21623 0.94079 1.01986 1.02000 1.22101 0.97763 0.98672 1.01173 1.22096 0.87008 0.95681 1.01520 1.62056 1.08018 1.54597 1.01871 1.19962 0.94536 0.93292 0.88028 1.21256 1.37333 1.04305 0.91688 0.94451 1.25792 0.96683 1.00603 0.95825 1.70046 1.49584 1.38705 1.00717 0.85791 0.79493 0.80277 0.77859 1.19140 1.20731 1.17713 1.22122 0.99122 0.95545 0.90039 1.20399 1.01405 0.98356 0.89548 1.19819 0.94660 0.98652 0.97664 1.20988 1.00584 0.94704 0.93937 1.20461 0.92330 1.03855 0.99682 1.19847 0.93026 0.94373 0.89517 1.21072 0.97518 1.00877 0.98992 1.20387 0.94959 0.99218 0.94886 1.21887 0.93970 1.03837 0.94928 1.24096 0.88856 0.92907 0.96806 1.86769 1.42687 1.45858 1.48830 0.93854 0.91081 0.91992 0.90903 0.94265 0.93431 0.89578 0.98572 0.96299 0.92538 0.94557 0.92383 0.90788 0.89974 0.83592 0.84285 0.85158 0.88627 0.87377 0.89387 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.16 -5.01 5.28 30.59 0.16 -4.85 16 3 C 0.06 2.35 4.97 86.30 0.43 2.78 16 4 N -0.54 -22.00 4.66 -900.78 -4.20 -26.20 16 5 C 0.17 8.14 3.67 85.56 0.31 8.46 16 6 C -0.51 -29.61 9.09 25.60 0.23 -29.38 16 7 H 0.04 2.43 7.72 -2.91 -0.02 2.41 16 8 C 0.01 0.46 5.47 84.65 0.46 0.93 16 9 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 10 Si 0.94 44.72 27.45 68.60 1.88 46.60 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.25 -11.30 6.56 99.48 0.65 -10.65 16 14 C 0.06 1.92 4.69 86.30 0.40 2.32 16 15 C -0.06 -1.54 5.28 29.85 0.16 -1.38 16 16 C -0.11 -2.55 5.14 -19.83 -0.10 -2.65 16 17 C -0.08 -1.82 9.68 22.21 0.21 -1.60 16 18 C -0.14 -3.17 10.06 22.45 0.23 -2.94 16 19 C 0.08 1.80 7.04 22.70 0.16 1.96 16 20 C -0.18 -4.02 6.27 -19.52 -0.12 -4.15 16 21 C -0.08 -1.78 9.69 22.16 0.21 -1.57 16 22 C -0.11 -1.62 7.12 30.73 0.22 -1.40 16 23 C 0.05 0.63 8.01 72.56 0.58 1.21 16 24 O -0.33 -7.12 11.10 -95.02 -1.05 -8.18 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 2.03 6.36 -2.39 -0.02 2.01 16 29 H 0.04 1.47 6.21 -2.38 -0.01 1.46 16 30 H 0.05 2.06 7.15 -2.39 -0.02 2.04 16 31 H 0.09 2.61 6.48 -2.39 -0.02 2.59 16 32 H 0.00 -0.16 5.02 -2.39 -0.01 -0.17 16 33 H 0.02 0.91 7.21 -2.39 -0.02 0.90 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.04 1.13 6.03 -2.39 -0.01 1.11 16 36 H 0.06 1.95 7.87 -2.39 -0.02 1.93 16 37 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 38 H 0.08 1.94 6.50 -2.38 -0.02 1.93 16 39 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.75 353.43 2.10 -67.64 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.91 Total: 14.95 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.27 Total: -35.14 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -3.90 Total: -85.88 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.05 Total: -8.18 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -69.75 2.10 -67.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209146022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.154 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds