Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 N 1.46497 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00057 * 179.97438 * 4 3 2 6 6 O 1.21543 * 119.99985 * 359.97438 * 5 4 3 7 7 C 1.47847 * 119.99734 * 179.97438 * 5 4 3 8 8 C 1.39572 * 120.14317 * 180.02562 * 7 5 4 9 9 C 1.37957 * 119.85380 * 180.02562 * 8 7 5 10 10 C 1.38361 * 120.14425 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.85111 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47103 * 299.99884 * 11 10 9 13 13 C 1.52997 * 109.47238 * 60.00077 * 11 10 9 14 14 C 1.53002 * 109.46925 * 180.02562 * 11 10 9 15 15 C 1.50696 * 109.47300 * 180.02562 * 14 11 10 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47025 * 120.00050 * 19 17 15 22 22 H 1.48500 * 109.46740 * 240.00408 * 19 17 15 23 23 C 1.38360 * 120.29215 * 0.23233 * 10 9 8 24 24 C 1.37954 * 120.14529 * 359.49070 * 23 10 9 25 25 H 1.09007 * 109.46825 * 60.00237 * 1 2 3 26 26 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47094 * 300.00123 * 1 2 3 28 28 H 1.08995 * 109.47094 * 239.99877 * 2 1 3 29 29 H 1.08999 * 109.46973 * 120.00046 * 2 1 3 30 30 H 1.08999 * 109.47065 * 59.99552 * 3 2 1 31 31 H 1.08999 * 109.47306 * 299.99842 * 3 2 1 32 32 H 0.97005 * 119.99795 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.07619 * 359.97438 * 8 7 5 34 34 H 1.08002 * 119.92731 * 179.97438 * 9 8 7 35 35 H 1.08992 * 109.47280 * 59.99899 * 12 11 10 36 36 H 1.09002 * 109.46777 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47140 * 300.00046 * 12 11 10 38 38 H 1.09004 * 109.47261 * 59.99705 * 13 11 10 39 39 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99686 * 13 11 10 41 41 H 1.09004 * 109.46930 * 299.99901 * 14 11 10 42 42 H 1.09004 * 109.47059 * 59.99503 * 14 11 10 43 43 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 44 44 H 1.08004 * 119.92476 * 179.74494 * 23 10 9 45 45 H 1.07999 * 120.07349 * 180.25276 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5711 3.6624 -0.0011 7 6 5.6573 2.6098 0.0014 8 6 6.3582 3.8168 0.0015 9 6 7.7377 3.8098 0.0021 10 6 8.4265 2.6098 0.0020 11 6 9.9336 2.6099 0.0021 12 6 10.4435 3.3313 -1.2471 13 6 10.4435 3.3311 1.2514 14 6 10.4436 1.1674 0.0014 15 6 11.9506 1.1674 0.0020 16 1 12.4905 2.1028 0.0033 17 6 12.6400 -0.0266 0.0021 18 7 11.9825 -1.1655 0.0010 19 14 14.5080 -0.0266 0.0037 20 1 15.0029 1.3735 0.0053 21 1 15.0020 -0.7271 1.2162 22 1 15.0040 -0.7260 -1.2088 23 6 7.7378 1.4098 -0.0035 24 6 6.3583 1.4028 0.0017 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6025 0.0013 33 1 5.8218 4.7542 0.0003 34 1 8.2813 4.7431 0.0018 35 1 10.0802 4.3588 -1.2471 36 1 11.5336 3.3309 -1.2472 37 1 10.0803 2.8175 -2.1371 38 1 10.0801 2.8172 2.1414 39 1 11.5335 3.3308 1.2516 40 1 10.0801 4.3588 1.2514 41 1 10.0802 0.6531 0.8911 42 1 10.0802 0.6540 -0.8889 43 1 12.4674 -2.0056 0.0007 44 1 8.2814 0.4766 -0.0076 45 1 5.8219 0.4654 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220235984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = -42.954301 kcal Electronic energy + Delta-G solvation = -22470.084733 eV Core-core repulsion = 19258.210707 eV Total energy + Delta-G solvation = -3211.874026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17659 -38.83685 -36.08015 -35.71918 -32.97045 -32.42963 -30.75120 -29.94501 -27.23520 -26.45502 -26.44063 -24.21333 -22.91783 -22.01189 -21.56812 -20.46611 -18.49116 -17.84587 -16.42361 -16.19956 -15.98278 -15.04454 -14.80476 -14.59140 -14.55581 -14.20299 -13.71657 -13.39750 -13.29870 -13.05599 -12.79944 -12.78044 -12.40790 -12.23256 -12.13488 -12.02771 -11.48056 -11.40715 -11.21404 -11.04849 -10.99639 -10.76930 -10.67938 -10.46790 -10.22401 -10.01406 -9.83782 -9.22910 -9.15379 -8.93629 -8.69219 -8.40163 -8.32851 -6.04323 -4.04682 1.11877 1.69242 3.02797 3.09370 3.28009 3.36445 3.39206 4.14657 4.42373 4.49877 4.64014 4.78007 4.91461 5.03143 5.23329 5.27920 5.30624 5.31902 5.32411 5.45448 5.65988 5.66177 5.73947 5.78494 5.86654 5.91392 5.93955 5.96536 6.26779 6.31012 6.34723 6.36790 6.54020 6.56188 6.63483 6.68194 6.83089 7.04950 7.05893 7.19125 7.28860 7.42824 7.58086 7.70616 7.94464 8.19566 8.38098 8.99904 9.58826 11.07280 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.003104 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.265658 B = 9019.711586 C = 9995.008946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.119 3.881 4 N -0.732 5.732 5 C 0.564 3.436 6 O -0.546 6.546 7 C -0.161 4.161 8 C -0.062 4.062 9 C -0.132 4.132 10 C -0.020 4.020 11 C -0.034 4.034 12 C -0.124 4.124 13 C -0.124 4.124 14 C 0.033 3.967 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.123 4.123 24 C -0.086 4.086 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.401 0.599 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.259 0.741 44 H 0.144 0.856 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 3.422 -0.004 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.005 4.005 4 N -0.385 5.385 5 C 0.353 3.647 6 O -0.425 6.425 7 C -0.164 4.164 8 C -0.081 4.081 9 C -0.150 4.150 10 C -0.021 4.021 11 C -0.034 4.034 12 C -0.181 4.181 13 C -0.181 4.181 14 C -0.004 4.004 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.141 4.141 24 C -0.105 4.105 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.162 0.838 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.180 3.989 -0.005 17.637 hybrid contribution 1.246 -0.685 0.003 1.422 sum -15.934 3.304 -0.002 16.273 Atomic orbital electron populations 1.21676 0.94557 1.02153 1.02292 1.21756 0.96978 0.95884 1.02957 1.21383 0.79576 0.97108 1.02395 1.45950 1.07256 1.08938 1.76379 1.18421 0.87559 0.83354 0.75333 1.90727 1.70212 1.31298 1.50276 1.19712 0.91750 0.94858 1.10080 1.21122 0.93876 0.97114 0.95988 1.21042 0.93358 0.98381 1.02210 1.20585 0.97123 0.92377 0.91967 1.19796 0.87585 1.00586 0.95460 1.21759 1.02199 0.97429 0.96690 1.21759 1.02196 0.97431 0.96689 1.19248 0.95932 0.88005 0.97239 1.21272 0.91491 0.92205 1.49976 0.92167 1.24995 0.98166 0.95770 0.95503 1.69954 1.35222 0.97223 1.51140 0.86602 0.86203 0.78074 0.77532 1.19755 1.21134 1.21127 1.21450 0.93236 0.99711 0.99654 1.21238 0.94789 0.96194 0.98286 0.92368 0.92156 0.92362 0.91162 0.91161 0.91532 0.91523 0.76299 0.85425 0.85712 0.94635 0.91223 0.93414 0.93415 0.91226 0.94632 0.96208 0.96198 0.93117 0.83845 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.50 16 2 C -0.14 -0.92 6.05 -26.73 -0.16 -1.08 16 3 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 4 N -0.73 -8.10 5.51 -61.25 -0.34 -8.43 16 5 C 0.56 8.27 7.77 -12.33 -0.10 8.17 16 6 O -0.55 -9.62 16.35 5.33 0.09 -9.54 16 7 C -0.16 -2.40 5.87 -104.97 -0.62 -3.02 16 8 C -0.06 -0.94 9.60 -39.19 -0.38 -1.32 16 9 C -0.13 -2.04 8.69 -39.64 -0.34 -2.38 16 10 C -0.02 -0.35 4.77 -104.53 -0.50 -0.85 16 11 C -0.03 -0.65 0.61 -155.66 -0.09 -0.75 16 12 C -0.12 -2.23 8.03 37.16 0.30 -1.93 16 13 C -0.12 -2.23 8.03 37.16 0.30 -1.93 16 14 C 0.03 0.77 2.70 -27.88 -0.08 0.69 16 15 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 16 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -25.61 13.29 55.43 0.74 -24.88 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.12 -2.07 8.96 -39.64 -0.36 -2.43 16 24 C -0.09 -1.23 9.54 -39.18 -0.37 -1.60 16 25 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 3.58 6.51 -40.82 -0.27 3.31 16 33 H 0.13 1.84 7.65 -52.49 -0.40 1.44 16 34 H 0.12 1.73 7.08 -52.49 -0.37 1.36 16 35 H 0.03 0.55 7.37 -51.93 -0.38 0.16 16 36 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 40 H 0.03 0.55 7.38 -51.93 -0.38 0.16 16 41 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 42 H 0.02 0.50 7.49 -51.93 -0.39 0.11 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.14 2.61 5.87 -52.48 -0.31 2.31 16 45 H 0.12 1.31 6.41 -52.49 -0.34 0.97 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -30.36 359.08 -8.69 -39.05 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.15 Total: 2.48 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.41 Total: -19.95 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.40 Total: -33.31 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.36 -8.69 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220235984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.904 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds