Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 N 1.46497 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00057 * 179.97438 * 4 3 2 6 6 O 1.21543 * 119.99985 * 359.97438 * 5 4 3 7 7 C 1.47847 * 119.99734 * 179.97438 * 5 4 3 8 8 C 1.39572 * 120.14317 * 180.02562 * 7 5 4 9 9 C 1.37957 * 119.85380 * 180.02562 * 8 7 5 10 10 C 1.38361 * 120.14425 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.85111 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47103 * 299.99884 * 11 10 9 13 13 C 1.52997 * 109.47238 * 60.00077 * 11 10 9 14 14 C 1.53002 * 109.46925 * 180.02562 * 11 10 9 15 15 C 1.50696 * 109.47300 * 180.02562 * 14 11 10 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47025 * 120.00050 * 19 17 15 22 22 H 1.48500 * 109.46740 * 240.00408 * 19 17 15 23 23 C 1.38360 * 120.29215 * 0.23233 * 10 9 8 24 24 C 1.37954 * 120.14529 * 359.49070 * 23 10 9 25 25 H 1.09007 * 109.46825 * 60.00237 * 1 2 3 26 26 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47094 * 300.00123 * 1 2 3 28 28 H 1.08995 * 109.47094 * 239.99877 * 2 1 3 29 29 H 1.08999 * 109.46973 * 120.00046 * 2 1 3 30 30 H 1.08999 * 109.47065 * 59.99552 * 3 2 1 31 31 H 1.08999 * 109.47306 * 299.99842 * 3 2 1 32 32 H 0.97005 * 119.99795 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.07619 * 359.97438 * 8 7 5 34 34 H 1.08002 * 119.92731 * 179.97438 * 9 8 7 35 35 H 1.08992 * 109.47280 * 59.99899 * 12 11 10 36 36 H 1.09002 * 109.46777 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47140 * 300.00046 * 12 11 10 38 38 H 1.09004 * 109.47261 * 59.99705 * 13 11 10 39 39 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99686 * 13 11 10 41 41 H 1.09004 * 109.46930 * 299.99901 * 14 11 10 42 42 H 1.09004 * 109.47059 * 59.99503 * 14 11 10 43 43 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 44 44 H 1.08004 * 119.92476 * 179.74494 * 23 10 9 45 45 H 1.07999 * 120.07349 * 180.25276 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5711 3.6624 -0.0011 7 6 5.6573 2.6098 0.0014 8 6 6.3582 3.8168 0.0015 9 6 7.7377 3.8098 0.0021 10 6 8.4265 2.6098 0.0020 11 6 9.9336 2.6099 0.0021 12 6 10.4435 3.3313 -1.2471 13 6 10.4435 3.3311 1.2514 14 6 10.4436 1.1674 0.0014 15 6 11.9506 1.1674 0.0020 16 1 12.4905 2.1028 0.0033 17 6 12.6400 -0.0266 0.0021 18 7 11.9825 -1.1655 0.0010 19 14 14.5080 -0.0266 0.0037 20 1 15.0029 1.3735 0.0053 21 1 15.0020 -0.7271 1.2162 22 1 15.0040 -0.7260 -1.2088 23 6 7.7378 1.4098 -0.0035 24 6 6.3583 1.4028 0.0017 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6025 0.0013 33 1 5.8218 4.7542 0.0003 34 1 8.2813 4.7431 0.0018 35 1 10.0802 4.3588 -1.2471 36 1 11.5336 3.3309 -1.2472 37 1 10.0803 2.8175 -2.1371 38 1 10.0801 2.8172 2.1414 39 1 11.5335 3.3308 1.2516 40 1 10.0801 4.3588 1.2514 41 1 10.0802 0.6531 0.8911 42 1 10.0802 0.6540 -0.8889 43 1 12.4674 -2.0056 0.0007 44 1 8.2814 0.4766 -0.0076 45 1 5.8219 0.4654 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220235984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -59.253070 kcal Electronic energy + Delta-G solvation = -22470.791501 eV Core-core repulsion = 19258.210707 eV Total energy + Delta-G solvation = -3212.580793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36385 -40.10746 -37.34990 -36.79615 -34.51801 -33.68676 -31.98975 -31.22181 -29.04903 -27.91492 -27.29227 -25.80018 -24.28334 -23.08944 -22.51375 -21.63520 -19.97546 -18.97581 -18.29386 -17.30168 -16.77397 -16.63675 -16.21510 -15.88240 -15.62461 -15.48479 -14.95290 -14.94440 -14.52840 -14.26435 -13.88465 -13.82980 -13.69922 -13.65441 -13.38985 -12.94664 -12.93868 -12.72438 -12.65644 -12.31845 -12.27729 -12.10546 -12.00977 -11.88210 -11.76461 -11.65424 -11.06409 -10.86007 -10.78712 -10.50015 -10.23031 -9.90025 -9.59574 -8.12812 -6.18789 -0.10660 0.46730 1.41262 1.43522 1.54203 1.83598 2.13532 2.45077 2.91927 3.22150 3.65814 3.83502 3.92583 3.97768 4.04446 4.06743 4.31531 4.34420 4.41878 4.47912 4.58435 4.60823 4.66385 4.72846 4.85293 4.96277 4.96714 5.04342 5.13171 5.14852 5.15598 5.23727 5.28529 5.32866 5.34801 5.40018 5.46622 5.50548 5.54103 5.56239 5.82115 5.83410 5.92278 5.99492 6.36185 6.45511 6.95757 7.12752 7.48376 8.99417 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.003104 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.265658 B = 9019.711586 C = 9995.008946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.116 3.884 4 N -0.718 5.718 5 C 0.562 3.438 6 O -0.580 6.580 7 C -0.163 4.163 8 C -0.064 4.064 9 C -0.125 4.125 10 C -0.036 4.036 11 C -0.030 4.030 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.044 3.956 15 C -0.517 4.517 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.952 3.048 20 H -0.261 1.261 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.142 4.142 24 C -0.073 4.073 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.413 0.587 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.067 0.933 41 H -0.008 1.008 42 H -0.007 1.007 43 H 0.259 0.741 44 H 0.120 0.880 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 4.333 -0.002 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.007 4.007 4 N -0.370 5.370 5 C 0.351 3.649 6 O -0.461 6.461 7 C -0.166 4.166 8 C -0.083 4.083 9 C -0.143 4.143 10 C -0.036 4.036 11 C -0.030 4.030 12 C -0.177 4.177 13 C -0.177 4.177 14 C 0.007 3.993 15 C -0.555 4.555 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.778 3.222 20 H -0.185 1.185 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.160 4.160 24 C -0.092 4.092 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.251 0.749 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.860 4.878 -0.003 18.514 hybrid contribution 1.355 -0.997 0.002 1.682 sum -16.504 3.881 -0.001 16.955 Atomic orbital electron populations 1.21685 0.93794 1.02856 1.02339 1.21722 0.97533 0.93889 1.03656 1.21527 0.78358 0.98989 1.01809 1.45924 1.08113 1.08456 1.74519 1.18404 0.87385 0.83791 0.75287 1.90713 1.70647 1.32595 1.52180 1.19875 0.92191 0.94999 1.09540 1.21303 0.93860 0.97694 0.95428 1.21125 0.93476 0.98221 1.01490 1.20455 0.95993 0.93421 0.93724 1.19637 0.89125 0.97588 0.96678 1.21710 1.01267 0.99061 0.95638 1.21710 1.01264 0.99063 0.95636 1.19054 0.94838 0.90849 0.94562 1.21689 0.92877 0.92346 1.48565 0.91488 1.25837 1.02749 0.95603 0.95561 1.70085 1.36956 0.97795 1.52668 0.85590 0.80821 0.78509 0.77305 1.18489 1.21035 1.21022 1.21351 0.94438 0.98818 1.01375 1.21404 0.93684 0.97490 0.96614 0.92366 0.91110 0.92358 0.90449 0.90447 0.92142 0.92135 0.74949 0.84527 0.83630 0.91375 0.92567 0.94334 0.94335 0.92569 0.91370 0.98924 0.98899 0.93190 0.86221 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.46 6.05 30.60 0.19 -1.28 16 3 C 0.12 2.01 5.67 86.38 0.49 2.50 16 4 N -0.72 -14.57 5.51 -465.99 -2.57 -17.13 16 5 C 0.56 15.66 7.77 86.79 0.67 16.33 16 6 O -0.58 -19.83 16.35 -3.85 -0.06 -19.89 16 7 C -0.16 -4.61 5.87 -20.09 -0.12 -4.72 16 8 C -0.06 -1.82 9.60 22.53 0.22 -1.61 16 9 C -0.13 -3.62 8.69 22.23 0.19 -3.43 16 10 C -0.04 -1.21 4.77 -19.80 -0.09 -1.31 16 11 C -0.03 -1.15 0.61 -52.93 -0.03 -1.18 16 12 C -0.12 -4.19 8.03 71.98 0.58 -3.62 16 13 C -0.12 -4.19 8.03 71.98 0.58 -3.61 16 14 C 0.04 2.15 2.70 29.85 0.08 2.23 16 15 C -0.52 -27.33 7.65 25.60 0.20 -27.13 16 16 H 0.07 3.39 5.68 -2.91 -0.02 3.37 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 18 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 19 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 C -0.14 -4.83 8.96 22.23 0.20 -4.63 16 24 C -0.07 -2.01 9.54 22.53 0.21 -1.79 16 25 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 6.38 6.51 -92.70 -0.60 5.78 16 33 H 0.14 3.67 7.65 -2.91 -0.02 3.65 16 34 H 0.15 3.54 7.08 -2.91 -0.02 3.52 16 35 H 0.07 1.92 7.37 -2.39 -0.02 1.91 16 36 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 40 H 0.07 1.92 7.38 -2.39 -0.02 1.91 16 41 H -0.01 -0.41 7.52 -2.38 -0.02 -0.42 16 42 H -0.01 -0.39 7.49 -2.39 -0.02 -0.41 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.12 4.63 5.87 -2.91 -0.02 4.61 16 45 H 0.15 3.00 6.41 -2.91 -0.02 2.98 16 Total: -1.00 -66.33 359.08 4.59 -61.74 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.37 Total: 18.29 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.54 Total: -33.55 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.28 Total: -71.76 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.33 4.59 -61.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220235984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.486 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds