Wall clock time and date at job start Tue Mar 31 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.33674 * 2 1 4 4 C 1.51189 * 110.29509 * 237.88985 * 2 1 3 5 5 C 1.38332 * 131.26589 * 78.15755 * 4 2 1 6 6 N 1.31836 * 120.75214 * 179.97438 * 5 4 2 7 7 C 1.31886 * 121.78802 * 0.02562 * 6 5 4 8 8 C 1.38205 * 120.71030 * 359.97438 * 7 6 5 9 9 C 1.38468 * 109.68779 * 258.14822 * 4 2 1 10 10 C 1.51054 * 109.87487 * 359.97438 * 9 4 2 11 11 C 1.54401 * 110.29688 * 122.11536 * 2 1 3 12 12 H 1.09006 * 110.97583 * 211.07691 * 11 2 1 13 13 O 1.42899 * 110.81136 * 334.51967 * 11 2 1 14 14 C 1.42903 * 113.99629 * 204.48828 * 13 11 2 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.46632 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.46609 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99687 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00321 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47191 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47204 * 120.00366 * 23 21 19 26 26 H 1.48501 * 109.47152 * 240.00312 * 23 21 19 27 27 H 1.09001 * 109.46853 * 297.88337 * 1 2 3 28 28 H 1.08995 * 109.47288 * 57.88197 * 1 2 3 29 29 H 1.08996 * 109.46940 * 177.88780 * 1 2 3 30 30 H 1.07999 * 119.62683 * 359.97438 * 5 4 2 31 31 H 1.08003 * 119.63807 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.44861 * 180.02562 * 8 7 6 33 33 H 1.09005 * 110.30618 * 224.04139 * 10 9 4 34 34 H 1.09005 * 110.31044 * 101.88181 * 10 9 4 35 35 H 1.09002 * 109.47382 * 59.99956 * 14 13 11 36 36 H 1.09001 * 109.46938 * 299.99942 * 14 13 11 37 37 H 1.09001 * 109.47194 * 299.99575 * 15 14 13 38 38 H 1.08992 * 109.47399 * 59.99748 * 15 14 13 39 39 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 40 40 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 41 41 H 1.08992 * 109.47098 * 299.99158 * 17 16 15 42 42 H 1.09001 * 109.47583 * 60.00267 * 17 16 15 43 43 H 1.09001 * 109.47420 * 299.99415 * 18 17 16 44 44 H 1.08992 * 109.47457 * 59.99756 * 18 17 16 45 45 H 0.97000 * 119.99871 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0545 -0.7538 -1.2011 5 6 2.1708 -0.3860 -2.5296 6 7 2.6672 -1.2224 -3.4196 7 6 3.0697 -2.4332 -3.0863 8 6 2.9841 -2.8703 -1.7780 9 6 2.4674 -2.0177 -0.8148 10 6 2.2494 -2.1980 0.6690 11 6 2.0657 -0.7699 1.2265 12 1 3.0186 -0.3587 1.5597 13 8 1.1108 -0.7587 2.2896 14 6 1.6835 -0.9347 3.5870 15 6 0.5753 -0.9067 4.6416 16 6 1.1885 -1.0945 6.0307 17 6 0.0803 -1.0672 7.0852 18 6 0.6934 -1.2557 8.4743 19 6 -0.3982 -1.2293 9.5130 20 1 -1.4263 -1.0915 9.2125 21 6 -0.0843 -1.3812 10.8469 22 7 1.1677 -1.5485 11.2130 23 14 -1.4374 -1.3478 12.1345 24 1 -2.7494 -1.1471 11.4687 25 1 -1.4496 -2.6360 12.8732 26 1 -1.1887 -0.2344 13.0851 27 1 -0.3633 0.4806 0.9084 28 1 -0.3633 0.5463 -0.8703 29 1 -0.3633 -1.0269 -0.0379 30 1 1.8514 0.5975 -2.8412 31 1 3.4714 -3.0900 -3.8438 32 1 3.3154 -3.8627 -1.5097 33 1 3.1186 -2.6730 1.1241 34 1 1.3541 -2.7929 0.8504 35 1 2.3928 -0.1307 3.7833 36 1 2.2003 -1.8935 3.6289 37 1 0.0581 0.0519 4.5998 38 1 -0.1336 -1.7109 4.4452 39 1 1.7060 -2.0530 6.0729 40 1 1.8973 -0.2900 6.2269 41 1 -0.4375 -0.1090 7.0433 42 1 -0.6281 -1.8720 6.8890 43 1 1.2110 -2.2140 8.5161 44 1 1.4020 -0.4512 8.6709 45 1 1.3884 -1.6558 12.1515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:01 Heat of formation + Delta-G solvation = -45.530425 kcal Electronic energy + Delta-G solvation = -21710.048279 eV Core-core repulsion = 18498.062544 eV Total energy + Delta-G solvation = -3211.985735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25990 -38.73818 -36.40199 -35.00221 -32.87209 -32.73488 -30.56972 -30.07570 -29.17909 -26.44397 -25.46214 -23.68899 -23.28157 -21.99148 -21.09770 -20.48800 -20.00103 -17.21633 -16.95107 -16.63290 -16.16827 -15.95765 -15.53778 -14.83901 -14.67897 -14.43919 -14.39833 -13.94141 -13.54090 -13.13170 -13.00934 -12.83959 -12.62002 -12.57180 -12.26143 -11.95552 -11.61112 -11.53245 -11.22747 -11.16278 -10.99868 -10.93165 -10.47677 -10.45224 -10.39169 -9.91492 -9.75005 -9.65879 -9.62992 -9.26497 -9.25794 -9.00009 -8.33762 -5.98789 -4.00787 0.75130 0.89121 3.31409 3.33931 3.38820 3.42950 3.43484 3.86895 4.01975 4.21126 4.46692 4.48156 4.56582 4.70857 4.73400 5.00004 5.03917 5.09685 5.17181 5.19103 5.20571 5.34299 5.36936 5.45381 5.47124 5.49767 5.61298 5.69109 5.71777 5.74436 5.79478 6.02525 6.05245 6.11232 6.26139 6.33494 6.39524 6.49502 6.80716 6.94541 7.08682 7.17675 7.61619 7.70320 7.85398 8.02238 8.45509 9.07009 9.63227 11.12601 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.049360 B = 0.001980 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.122080 B =14138.283351 C =14421.168709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.044 4.044 3 H 0.089 0.911 4 C -0.142 4.142 5 C 0.115 3.885 6 N -0.485 5.485 7 C 0.095 3.905 8 C -0.160 4.160 9 C -0.047 4.047 10 C -0.110 4.110 11 C 0.093 3.907 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.059 3.941 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.109 4.109 18 C 0.019 3.981 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 0.337 -27.935 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.042 4.042 6 N -0.193 5.193 7 C -0.061 4.061 8 C -0.180 4.180 9 C -0.055 4.055 10 C -0.147 4.147 11 C 0.035 3.965 12 H 0.094 0.906 13 O -0.287 6.287 14 C -0.017 4.017 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.018 4.018 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.320 0.598 -28.682 29.012 hybrid contribution -0.324 -0.471 1.710 1.803 sum 3.996 0.127 -26.972 27.267 Atomic orbital electron populations 1.21524 0.92388 1.02447 1.02258 1.20589 0.97626 0.98715 0.89380 0.89315 1.21471 1.00406 0.96552 0.95959 1.22220 0.95099 0.99010 0.87886 1.67741 1.10509 1.03996 1.37083 1.22712 0.96071 0.92680 0.94667 1.21661 1.01780 1.00942 0.93602 1.20751 0.94630 0.94016 0.96142 1.21650 1.03563 0.99342 0.90193 1.22647 0.92463 0.93655 0.87784 0.90587 1.87953 1.32941 1.93415 1.14401 1.22734 0.96910 0.99835 0.82191 1.21591 0.97435 1.02937 0.93376 1.21589 0.99410 1.01440 0.92906 1.21612 0.96566 1.00320 0.96215 1.19119 0.96053 0.96984 0.89645 1.21335 0.93830 1.49017 0.91554 0.92660 1.25046 0.95389 0.95436 0.98755 1.69978 1.17026 1.50162 1.16460 0.86547 0.82310 0.77562 0.81654 1.19742 1.21045 1.21032 0.90698 0.92822 0.92542 0.82894 0.82513 0.84831 0.89918 0.88323 0.93230 0.93339 0.91408 0.91444 0.92453 0.92423 0.93399 0.93417 0.96708 0.96694 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.62 37.16 0.32 -0.79 16 2 C -0.04 -0.37 3.44 -90.79 -0.31 -0.68 16 3 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.25 5.50 -104.26 -0.57 -1.83 16 5 C 0.11 1.02 11.19 -17.52 -0.20 0.83 16 6 N -0.48 -4.82 10.36 -13.22 -0.14 -4.96 16 7 C 0.10 0.78 11.19 -17.54 -0.20 0.58 16 8 C -0.16 -1.25 10.12 -39.45 -0.40 -1.65 16 9 C -0.05 -0.42 6.20 -104.22 -0.65 -1.06 16 10 C -0.11 -0.93 6.51 -26.97 -0.18 -1.10 16 11 C 0.09 0.84 3.36 -25.26 -0.08 0.76 16 12 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 13 O -0.37 -4.08 8.54 -35.23 -0.30 -4.38 16 14 C 0.06 0.67 5.81 37.16 0.22 0.89 16 15 C -0.12 -1.56 5.58 -26.73 -0.15 -1.71 16 16 C -0.12 -1.89 5.21 -26.73 -0.14 -2.02 16 17 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 18 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 19 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 23 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.07 0.70 7.49 -51.93 -0.39 0.32 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -31.63 368.11 -10.14 -41.77 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -7.95 Total: -4.78 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.02 Total: -23.55 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.60 Total: -31.40 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.30 Total: -4.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.63 -10.14 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.760 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds