Wall clock time and date at job start Tue Mar 31 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.33674 * 2 1 4 4 C 1.51189 * 110.29509 * 237.88985 * 2 1 3 5 5 C 1.38332 * 131.26589 * 78.15755 * 4 2 1 6 6 N 1.31836 * 120.75214 * 179.97438 * 5 4 2 7 7 C 1.31886 * 121.78802 * 0.02562 * 6 5 4 8 8 C 1.38205 * 120.71030 * 359.97438 * 7 6 5 9 9 C 1.38468 * 109.68779 * 258.14822 * 4 2 1 10 10 C 1.51054 * 109.87487 * 359.97438 * 9 4 2 11 11 C 1.54401 * 110.29688 * 122.11536 * 2 1 3 12 12 H 1.09006 * 110.97583 * 211.07691 * 11 2 1 13 13 O 1.42899 * 110.81136 * 334.51967 * 11 2 1 14 14 C 1.42903 * 113.99629 * 204.48828 * 13 11 2 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.46632 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.46609 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99687 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00321 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47191 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47204 * 120.00366 * 23 21 19 26 26 H 1.48501 * 109.47152 * 240.00312 * 23 21 19 27 27 H 1.09001 * 109.46853 * 297.88337 * 1 2 3 28 28 H 1.08995 * 109.47288 * 57.88197 * 1 2 3 29 29 H 1.08996 * 109.46940 * 177.88780 * 1 2 3 30 30 H 1.07999 * 119.62683 * 359.97438 * 5 4 2 31 31 H 1.08003 * 119.63807 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.44861 * 180.02562 * 8 7 6 33 33 H 1.09005 * 110.30618 * 224.04139 * 10 9 4 34 34 H 1.09005 * 110.31044 * 101.88181 * 10 9 4 35 35 H 1.09002 * 109.47382 * 59.99956 * 14 13 11 36 36 H 1.09001 * 109.46938 * 299.99942 * 14 13 11 37 37 H 1.09001 * 109.47194 * 299.99575 * 15 14 13 38 38 H 1.08992 * 109.47399 * 59.99748 * 15 14 13 39 39 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 40 40 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 41 41 H 1.08992 * 109.47098 * 299.99158 * 17 16 15 42 42 H 1.09001 * 109.47583 * 60.00267 * 17 16 15 43 43 H 1.09001 * 109.47420 * 299.99415 * 18 17 16 44 44 H 1.08992 * 109.47457 * 59.99756 * 18 17 16 45 45 H 0.97000 * 119.99871 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0545 -0.7538 -1.2011 5 6 2.1708 -0.3860 -2.5296 6 7 2.6672 -1.2224 -3.4196 7 6 3.0697 -2.4332 -3.0863 8 6 2.9841 -2.8703 -1.7780 9 6 2.4674 -2.0177 -0.8148 10 6 2.2494 -2.1980 0.6690 11 6 2.0657 -0.7699 1.2265 12 1 3.0186 -0.3587 1.5597 13 8 1.1108 -0.7587 2.2896 14 6 1.6835 -0.9347 3.5870 15 6 0.5753 -0.9067 4.6416 16 6 1.1885 -1.0945 6.0307 17 6 0.0803 -1.0672 7.0852 18 6 0.6934 -1.2557 8.4743 19 6 -0.3982 -1.2293 9.5130 20 1 -1.4263 -1.0915 9.2125 21 6 -0.0843 -1.3812 10.8469 22 7 1.1677 -1.5485 11.2130 23 14 -1.4374 -1.3478 12.1345 24 1 -2.7494 -1.1471 11.4687 25 1 -1.4496 -2.6360 12.8732 26 1 -1.1887 -0.2344 13.0851 27 1 -0.3633 0.4806 0.9084 28 1 -0.3633 0.5463 -0.8703 29 1 -0.3633 -1.0269 -0.0379 30 1 1.8514 0.5975 -2.8412 31 1 3.4714 -3.0900 -3.8438 32 1 3.3154 -3.8627 -1.5097 33 1 3.1186 -2.6730 1.1241 34 1 1.3541 -2.7929 0.8504 35 1 2.3928 -0.1307 3.7833 36 1 2.2003 -1.8935 3.6289 37 1 0.0581 0.0519 4.5998 38 1 -0.1336 -1.7109 4.4452 39 1 1.7060 -2.0530 6.0729 40 1 1.8973 -0.2900 6.2269 41 1 -0.4375 -0.1090 7.0433 42 1 -0.6281 -1.8720 6.8890 43 1 1.2110 -2.2140 8.5161 44 1 1.4020 -0.4512 8.6709 45 1 1.3884 -1.6558 12.1515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:01 Heat of formation + Delta-G solvation = -61.477335 kcal Electronic energy + Delta-G solvation = -21710.739789 eV Core-core repulsion = 18498.062544 eV Total energy + Delta-G solvation = -3212.677245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89415 -39.49570 -37.39392 -36.36444 -34.72445 -33.41251 -32.06945 -30.79258 -29.97271 -28.07488 -26.15311 -25.16234 -24.10610 -22.67361 -22.36078 -21.77381 -21.08941 -18.44024 -17.86424 -17.67870 -17.29550 -16.83146 -16.53309 -16.33345 -15.62125 -15.50957 -15.34139 -14.69716 -14.56414 -14.29835 -14.07952 -13.85308 -13.75036 -13.48972 -13.27216 -13.18514 -13.11595 -12.85162 -12.60653 -12.34903 -12.29654 -11.94824 -11.87996 -11.79331 -11.66014 -11.32695 -11.29277 -10.96742 -10.60570 -10.55581 -10.40546 -10.36529 -9.88585 -8.20269 -6.31239 0.14334 0.25394 1.39693 1.39739 1.53439 2.40524 2.54561 2.80176 3.12513 3.23781 3.39696 3.63722 3.84013 3.92934 3.99211 4.05154 4.14380 4.23250 4.33186 4.42391 4.43953 4.45785 4.50887 4.56311 4.58053 4.73003 4.78469 4.83411 4.90141 4.91563 4.97770 5.02050 5.07187 5.11750 5.13917 5.31782 5.33866 5.38748 5.41956 5.42565 5.57017 5.74338 5.79636 5.87950 6.26207 6.28608 6.86595 6.99802 7.38024 8.91632 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.049360 B = 0.001980 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.122080 B =14138.283351 C =14421.168709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.042 4.042 3 H 0.099 0.901 4 C -0.148 4.148 5 C 0.104 3.896 6 N -0.510 5.510 7 C 0.088 3.912 8 C -0.161 4.161 9 C -0.060 4.060 10 C -0.106 4.106 11 C 0.089 3.911 12 H 0.086 0.914 13 O -0.379 6.379 14 C 0.064 3.936 15 C -0.107 4.107 16 C -0.107 4.107 17 C -0.100 4.100 18 C 0.020 3.980 19 C -0.544 4.544 20 H 0.059 0.941 21 C -0.004 4.004 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.049 0.951 43 H -0.009 1.009 44 H -0.009 1.009 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 0.279 -28.701 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.061 4.061 3 H 0.118 0.882 4 C -0.150 4.150 5 C -0.052 4.052 6 N -0.218 5.218 7 C -0.068 4.068 8 C -0.181 4.181 9 C -0.068 4.068 10 C -0.143 4.143 11 C 0.030 3.970 12 H 0.104 0.896 13 O -0.298 6.298 14 C -0.012 4.012 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.138 4.138 18 C -0.017 4.017 19 C -0.582 4.582 20 H 0.077 0.923 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.186 0.814 31 H 0.198 0.802 32 H 0.173 0.827 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.911 0.542 -29.465 29.729 hybrid contribution -0.166 -0.471 1.915 1.979 sum 3.746 0.071 -27.550 27.804 Atomic orbital electron populations 1.21467 0.92739 1.01671 1.02293 1.20583 0.97276 0.99216 0.88995 0.88236 1.21520 1.00675 0.96782 0.96038 1.22496 0.95100 0.99679 0.87939 1.67767 1.11371 1.04925 1.37779 1.23170 0.95594 0.92523 0.95543 1.21924 1.01134 1.01751 0.93276 1.20943 0.95030 0.94365 0.96489 1.21596 1.03679 0.98909 0.90131 1.22787 0.92482 0.94311 0.87386 0.89636 1.87924 1.33780 1.93564 1.14545 1.22591 0.95974 1.00694 0.81944 1.21411 0.97942 1.02838 0.92277 1.21433 0.98000 1.01633 0.93384 1.21449 0.97629 1.00378 0.94305 1.19058 0.95181 0.94722 0.92704 1.21789 0.94582 1.49144 0.92704 0.92317 1.26015 0.97998 0.94815 1.01268 1.70104 1.19238 1.50855 1.17224 0.85390 0.79265 0.77841 0.78502 1.18644 1.20317 1.20299 0.91556 0.91758 0.93761 0.81425 0.80151 0.82698 0.88850 0.89048 0.92388 0.92500 0.91458 0.91562 0.92335 0.92296 0.93210 0.93250 0.99057 0.99038 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 8.62 71.98 0.62 -1.43 16 2 C -0.04 -0.64 3.44 -10.91 -0.04 -0.68 16 3 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.15 -2.45 5.50 -19.63 -0.11 -2.56 16 5 C 0.10 1.76 11.19 84.71 0.95 2.71 16 6 N -0.51 -9.61 10.36 -195.75 -2.03 -11.63 16 7 C 0.09 1.30 11.19 84.68 0.95 2.25 16 8 C -0.16 -2.25 10.12 22.35 0.23 -2.02 16 9 C -0.06 -0.98 6.20 -19.61 -0.12 -1.10 16 10 C -0.11 -1.63 6.51 30.44 0.20 -1.44 16 11 C 0.09 1.47 3.36 31.55 0.11 1.57 16 12 H 0.09 1.26 7.88 -2.38 -0.02 1.24 16 13 O -0.38 -7.85 8.54 -148.98 -1.27 -9.13 16 14 C 0.06 1.34 5.81 71.98 0.42 1.76 16 15 C -0.11 -2.74 5.58 30.59 0.17 -2.57 16 16 C -0.11 -3.40 5.21 30.59 0.16 -3.24 16 17 C -0.10 -4.09 5.15 30.60 0.16 -3.93 16 18 C 0.02 1.09 4.97 29.85 0.15 1.24 16 19 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 20 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 21 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 22 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 23 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H 0.07 1.20 7.49 -2.39 -0.02 1.18 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.54 8.10 -2.38 -0.02 1.53 16 35 H 0.06 1.12 8.11 -2.39 -0.02 1.11 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -67.67 368.11 4.47 -63.20 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.93 Total: 8.41 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.53 Total: -40.48 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.74 Total: -68.70 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.27 Total: -9.13 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.67 4.47 -63.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.722 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds