Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46826 * 2 1 4 4 N 1.46896 * 109.46959 * 119.99437 * 2 1 3 5 5 C 1.46846 * 111.00103 * 56.05170 * 4 2 1 6 6 C 1.53033 * 109.52556 * 174.15919 * 5 4 2 7 7 C 1.53118 * 109.28013 * 59.17713 * 6 5 4 8 8 C 1.53117 * 109.16168 * 302.34516 * 7 6 5 9 9 H 1.08997 * 109.50244 * 297.67798 * 8 7 6 10 10 O 1.42897 * 109.50624 * 177.59681 * 8 7 6 11 11 C 1.35669 * 117.00148 * 84.25431 * 10 8 7 12 12 C 1.39313 * 119.81807 * 355.18095 * 11 10 8 13 13 C 1.36437 * 120.18655 * 180.02562 * 12 11 10 14 14 C 1.40831 * 119.81026 * 359.97438 * 13 12 11 15 15 C 1.41212 * 120.17996 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99657 * 20.12808 * 15 14 13 17 17 C 1.39893 * 120.00559 * 200.11742 * 15 14 13 18 18 N 1.30874 * 120.00397 * 217.90139 * 17 15 14 19 19 Si 1.86806 * 119.99365 * 37.90184 * 17 15 14 20 20 H 1.48504 * 109.47070 * 265.50983 * 19 17 15 21 21 H 1.48497 * 109.47290 * 25.51296 * 19 17 15 22 22 H 1.48503 * 109.47018 * 145.51277 * 19 17 15 23 23 C 1.40841 * 119.64358 * 0.25927 * 14 13 12 24 24 C 1.36441 * 119.80693 * 359.50393 * 23 14 13 25 25 C 1.46844 * 111.00718 * 291.83760 * 4 2 1 26 26 H 1.09002 * 109.47279 * 60.00405 * 1 2 3 27 27 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47344 * 300.00129 * 1 2 3 29 29 H 1.08998 * 109.47344 * 239.99871 * 2 1 3 30 30 H 1.09002 * 109.46960 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46861 * 299.99851 * 3 2 1 32 32 H 1.08998 * 109.47264 * 59.99822 * 3 2 1 33 33 H 1.08998 * 109.46707 * 54.13722 * 5 4 2 34 34 H 1.09001 * 109.45140 * 294.16808 * 5 4 2 35 35 H 1.09003 * 109.50289 * 299.23600 * 6 5 4 36 36 H 1.09001 * 109.50751 * 179.12157 * 6 5 4 37 37 H 1.09006 * 109.52402 * 182.44116 * 7 6 5 38 38 H 1.08995 * 109.52178 * 62.25229 * 7 6 5 39 39 H 1.08004 * 119.90480 * 0.02926 * 12 11 10 40 40 H 1.08004 * 120.09559 * 179.97438 * 13 12 11 41 41 H 0.96998 * 120.00351 * 5.08141 * 18 17 15 42 42 H 1.07995 * 120.09581 * 179.72033 * 23 14 13 43 43 H 1.07994 * 119.90361 * 180.25448 * 24 23 14 44 44 H 1.09003 * 109.46143 * 65.82135 * 25 4 2 45 45 H 1.09003 * 109.46013 * 305.86359 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4732 -2.0529 1.2817 6 6 2.1149 -2.7916 2.4583 7 6 1.8269 -2.0267 3.7531 8 6 2.3632 -0.5984 3.6231 9 1 3.4445 -0.6266 3.4885 10 8 2.0488 0.1389 4.8061 11 6 2.9001 0.0129 5.8549 12 6 3.9631 -0.8845 5.7804 13 6 4.8235 -1.0177 6.8309 14 6 4.6349 -0.2443 7.9926 15 6 5.5203 -0.3762 9.0847 16 1 6.5020 -0.8011 8.9357 17 6 5.1261 0.0436 10.3596 18 7 5.9898 0.6231 11.1540 19 14 3.3668 -0.2233 10.9282 20 1 2.5676 0.9981 10.6546 21 1 2.7791 -1.3738 10.1961 22 1 3.3552 -0.5061 12.3860 23 6 3.5548 0.6570 8.0618 24 6 2.7064 0.7816 7.0005 25 6 1.7143 0.0766 2.4126 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6885 -2.5873 0.3564 34 1 0.3944 -2.0025 1.4293 35 1 3.1922 -2.8543 2.3047 36 1 1.6978 -3.7961 2.5286 37 1 2.3186 -2.5258 4.5882 38 1 0.7513 -1.9975 3.9273 39 1 4.1065 -1.4765 4.8884 40 1 5.6468 -1.7141 6.7717 41 1 6.8819 0.8284 10.8333 42 1 3.4007 1.2503 8.9509 43 1 1.8802 1.4752 7.0502 44 1 0.6344 0.1169 2.5549 45 1 2.1047 1.0890 2.3087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = -26.537213 kcal Electronic energy + Delta-G solvation = -23288.442289 eV Core-core repulsion = 20077.280162 eV Total energy + Delta-G solvation = -3211.162127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00923 -38.52045 -36.56629 -34.58594 -33.49039 -30.62614 -30.37616 -29.67896 -29.17623 -27.39438 -24.69761 -24.28059 -23.04482 -21.36050 -20.74945 -20.31080 -19.23530 -18.14237 -17.23696 -16.49217 -15.32054 -14.84577 -14.62425 -14.51897 -14.39342 -14.36328 -14.07872 -13.67349 -13.36739 -13.11840 -12.91549 -12.64909 -12.38811 -12.28828 -12.14174 -11.88954 -11.83280 -11.40985 -11.18344 -11.02136 -10.98969 -10.83177 -10.74106 -10.63747 -10.33811 -10.14750 -10.08808 -9.72671 -9.28827 -8.80005 -8.39891 -7.82676 -7.44697 -7.17966 -4.34801 2.70810 2.75618 3.23235 3.36370 3.49574 3.54346 4.04131 4.27554 4.42496 4.66281 4.73371 4.88840 4.92264 5.00824 5.08147 5.26152 5.28231 5.38156 5.43678 5.44443 5.49043 5.58695 5.65459 5.72055 5.74566 5.81294 5.93811 5.97715 6.00450 6.04296 6.05554 6.09342 6.27277 6.40377 6.55460 6.76651 6.91243 6.98146 6.98325 7.24220 7.39581 7.50528 7.67622 7.84979 7.95904 8.28850 8.50709 8.68819 8.85207 9.88158 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032529 B = 0.003398 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.559710 B = 8239.032297 C = 8366.165348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 C -0.152 4.152 4 N -0.529 5.529 5 C 0.052 3.948 6 C -0.114 4.114 7 C -0.146 4.146 8 C 0.097 3.903 9 H 0.073 0.927 10 O -0.324 6.324 11 C -0.024 4.024 12 C -0.147 4.147 13 C -0.199 4.199 14 C 0.080 3.920 15 C -0.531 4.531 16 H 0.077 0.923 17 C 0.058 3.942 18 N -0.793 5.793 19 Si 1.058 2.942 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.285 1.285 23 C -0.224 4.224 24 C -0.089 4.089 25 C 0.057 3.943 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.291 0.709 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 -2.615 -17.985 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.029 4.029 3 C -0.210 4.210 4 N -0.254 5.254 5 C -0.075 4.075 6 C -0.152 4.152 7 C -0.184 4.184 8 C 0.039 3.961 9 H 0.091 0.909 10 O -0.239 6.239 11 C -0.067 4.067 12 C -0.165 4.165 13 C -0.218 4.218 14 C 0.077 3.923 15 C -0.558 4.558 16 H 0.095 0.905 17 C -0.166 4.166 18 N -0.413 5.413 19 Si 0.882 3.118 20 H -0.199 1.199 21 H -0.190 1.190 22 H -0.212 1.212 23 C -0.243 4.243 24 C -0.108 4.108 25 C -0.071 4.071 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.646 -2.340 -16.671 19.402 hybrid contribution 0.507 -0.290 -1.285 1.411 sum -9.139 -2.629 -17.956 20.319 Atomic orbital electron populations 1.22510 0.97698 1.02113 1.02446 1.21683 0.92638 0.95394 0.93165 1.21975 1.02135 0.94885 1.01958 1.62050 1.59250 1.02265 1.01865 1.22147 0.97000 0.89344 0.99038 1.21544 1.01765 0.98177 0.93728 1.22170 1.01862 0.96275 0.98124 1.21950 0.99772 0.90210 0.84120 0.90872 1.85794 1.49524 1.67502 1.21105 1.18395 0.95118 1.03912 0.89286 1.20559 0.96957 1.00183 0.98836 1.20517 1.01902 1.03643 0.95766 1.17616 0.91374 0.90125 0.93176 1.20419 1.02169 1.39171 0.94045 0.90491 1.27239 1.06354 0.89468 0.93543 1.70574 1.07776 1.22388 1.40530 0.83859 0.73323 0.78905 0.75674 1.19862 1.18957 1.21173 1.20620 1.00317 1.04661 0.98675 1.19676 0.99784 0.99213 0.92134 1.22042 0.98805 0.97940 0.88272 0.92110 0.92359 0.92290 0.89871 0.91626 0.92251 0.92046 0.90837 0.94433 0.91023 0.91273 0.90718 0.91718 0.88173 0.88628 0.89822 0.87531 0.88236 0.94033 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 8.47 37.16 0.31 -1.29 16 2 C 0.08 0.74 3.10 -67.71 -0.21 0.53 16 3 C -0.15 -1.37 8.69 37.16 0.32 -1.04 16 4 N -0.53 -6.04 4.71 -226.70 -1.07 -7.11 16 5 C 0.05 0.54 4.77 -3.84 -0.02 0.52 16 6 C -0.11 -1.29 6.09 -26.65 -0.16 -1.46 16 7 C -0.15 -2.10 5.26 -26.61 -0.14 -2.24 16 8 C 0.10 1.56 2.28 -26.65 -0.06 1.50 16 9 H 0.07 1.25 6.31 -51.93 -0.33 0.93 16 10 O -0.32 -6.43 9.79 -18.71 -0.18 -6.61 16 11 C -0.02 -0.54 6.62 -38.78 -0.26 -0.80 16 12 C -0.15 -3.24 8.17 -39.83 -0.33 -3.56 16 13 C -0.20 -4.82 9.74 -39.25 -0.38 -5.21 16 14 C 0.08 2.09 5.24 -106.80 -0.56 1.53 16 15 C -0.53 -14.41 9.26 -37.83 -0.35 -14.76 16 16 H 0.08 2.15 8.06 -52.48 -0.42 1.72 16 17 C 0.06 1.51 5.09 -17.34 -0.09 1.42 16 18 N -0.79 -20.99 13.66 55.54 0.76 -20.24 16 19 Si 1.06 23.98 25.84 -169.99 -4.39 19.59 16 20 H -0.27 -5.92 6.52 56.52 0.37 -5.55 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.22 -5.59 7.69 -39.25 -0.30 -5.89 16 24 C -0.09 -2.08 9.92 -39.83 -0.40 -2.47 16 25 C 0.06 0.76 4.32 -3.84 -0.02 0.75 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.48 6.48 -51.92 -0.34 0.15 16 28 H 0.06 0.56 6.75 -51.93 -0.35 0.21 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 6.19 -51.93 -0.32 0.28 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 34 H 0.04 0.39 6.59 -51.93 -0.34 0.04 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.18 6.84 -51.93 -0.36 0.83 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.95 5.36 -52.48 -0.28 1.67 16 40 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 41 H 0.29 7.49 8.73 -40.82 -0.36 7.13 16 42 H 0.11 2.63 4.90 -52.49 -0.26 2.37 16 43 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 44 H 0.04 0.56 6.82 -51.93 -0.35 0.20 16 45 H 0.09 1.17 5.84 -51.93 -0.30 0.87 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -27.41 339.52 -9.46 -36.87 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.06 Total: 4.84 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -2.63 Total: -32.46 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: -0.31 Total: -27.34 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.18 Total: -6.61 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -4.39 Total: 19.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.41 -9.46 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.331 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds