Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46826 * 2 1 4 4 N 1.46896 * 109.46959 * 119.99437 * 2 1 3 5 5 C 1.46846 * 111.00103 * 56.05170 * 4 2 1 6 6 C 1.53033 * 109.52556 * 174.15919 * 5 4 2 7 7 C 1.53118 * 109.28013 * 59.17713 * 6 5 4 8 8 C 1.53117 * 109.16168 * 302.34516 * 7 6 5 9 9 H 1.08997 * 109.50244 * 297.67798 * 8 7 6 10 10 O 1.42897 * 109.50624 * 177.59681 * 8 7 6 11 11 C 1.35669 * 117.00148 * 84.25431 * 10 8 7 12 12 C 1.39313 * 119.81807 * 355.18095 * 11 10 8 13 13 C 1.36437 * 120.18655 * 180.02562 * 12 11 10 14 14 C 1.40831 * 119.81026 * 359.97438 * 13 12 11 15 15 C 1.41212 * 120.17996 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99657 * 20.12808 * 15 14 13 17 17 C 1.39893 * 120.00559 * 200.11742 * 15 14 13 18 18 N 1.30874 * 120.00397 * 217.90139 * 17 15 14 19 19 Si 1.86806 * 119.99365 * 37.90184 * 17 15 14 20 20 H 1.48504 * 109.47070 * 265.50983 * 19 17 15 21 21 H 1.48497 * 109.47290 * 25.51296 * 19 17 15 22 22 H 1.48503 * 109.47018 * 145.51277 * 19 17 15 23 23 C 1.40841 * 119.64358 * 0.25927 * 14 13 12 24 24 C 1.36441 * 119.80693 * 359.50393 * 23 14 13 25 25 C 1.46844 * 111.00718 * 291.83760 * 4 2 1 26 26 H 1.09002 * 109.47279 * 60.00405 * 1 2 3 27 27 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47344 * 300.00129 * 1 2 3 29 29 H 1.08998 * 109.47344 * 239.99871 * 2 1 3 30 30 H 1.09002 * 109.46960 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46861 * 299.99851 * 3 2 1 32 32 H 1.08998 * 109.47264 * 59.99822 * 3 2 1 33 33 H 1.08998 * 109.46707 * 54.13722 * 5 4 2 34 34 H 1.09001 * 109.45140 * 294.16808 * 5 4 2 35 35 H 1.09003 * 109.50289 * 299.23600 * 6 5 4 36 36 H 1.09001 * 109.50751 * 179.12157 * 6 5 4 37 37 H 1.09006 * 109.52402 * 182.44116 * 7 6 5 38 38 H 1.08995 * 109.52178 * 62.25229 * 7 6 5 39 39 H 1.08004 * 119.90480 * 0.02926 * 12 11 10 40 40 H 1.08004 * 120.09559 * 179.97438 * 13 12 11 41 41 H 0.96998 * 120.00351 * 5.08141 * 18 17 15 42 42 H 1.07995 * 120.09581 * 179.72033 * 23 14 13 43 43 H 1.07994 * 119.90361 * 180.25448 * 24 23 14 44 44 H 1.09003 * 109.46143 * 65.82135 * 25 4 2 45 45 H 1.09003 * 109.46013 * 305.86359 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4732 -2.0529 1.2817 6 6 2.1149 -2.7916 2.4583 7 6 1.8269 -2.0267 3.7531 8 6 2.3632 -0.5984 3.6231 9 1 3.4445 -0.6266 3.4885 10 8 2.0488 0.1389 4.8061 11 6 2.9001 0.0129 5.8549 12 6 3.9631 -0.8845 5.7804 13 6 4.8235 -1.0177 6.8309 14 6 4.6349 -0.2443 7.9926 15 6 5.5203 -0.3762 9.0847 16 1 6.5020 -0.8011 8.9357 17 6 5.1261 0.0436 10.3596 18 7 5.9898 0.6231 11.1540 19 14 3.3668 -0.2233 10.9282 20 1 2.5676 0.9981 10.6546 21 1 2.7791 -1.3738 10.1961 22 1 3.3552 -0.5061 12.3860 23 6 3.5548 0.6570 8.0618 24 6 2.7064 0.7816 7.0005 25 6 1.7143 0.0766 2.4126 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6885 -2.5873 0.3564 34 1 0.3944 -2.0025 1.4293 35 1 3.1922 -2.8543 2.3047 36 1 1.6978 -3.7961 2.5286 37 1 2.3186 -2.5258 4.5882 38 1 0.7513 -1.9975 3.9273 39 1 4.1065 -1.4765 4.8884 40 1 5.6468 -1.7141 6.7717 41 1 6.8819 0.8284 10.8333 42 1 3.4007 1.2503 8.9509 43 1 1.8802 1.4752 7.0502 44 1 0.6344 0.1169 2.5549 45 1 2.1047 1.0890 2.3087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -41.645586 kcal Electronic energy + Delta-G solvation = -23289.097437 eV Core-core repulsion = 20077.280162 eV Total energy + Delta-G solvation = -3211.817276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26275 -39.93483 -38.22270 -35.72391 -35.29020 -32.06875 -31.67169 -31.12195 -30.74143 -28.11285 -26.35922 -25.44753 -24.41519 -22.86622 -22.32369 -21.63630 -20.28937 -20.00662 -18.82966 -17.60252 -16.46420 -16.29160 -16.08858 -15.98158 -15.88948 -15.44899 -15.23517 -14.98924 -14.91580 -14.41073 -14.15996 -13.99733 -13.89494 -13.62277 -13.40451 -12.91704 -12.88243 -12.68705 -12.58235 -12.48872 -12.25993 -12.11576 -11.98336 -11.84461 -11.69877 -11.60353 -11.53914 -11.14677 -11.06490 -10.72503 -9.70798 -9.46147 -9.26512 -9.07226 -6.37312 0.80740 0.85870 1.39986 1.55478 1.76437 2.19580 2.30787 2.48614 3.15656 3.47184 3.73167 3.77807 3.97446 3.99267 4.11259 4.18796 4.21516 4.27122 4.31899 4.39214 4.50779 4.51467 4.66832 4.70876 4.72521 4.78538 4.84136 4.90080 4.93208 4.98095 5.01250 5.05911 5.08253 5.20862 5.27052 5.31971 5.37613 5.39753 5.44324 5.51033 5.76722 5.88427 6.02801 6.08336 6.17053 6.35062 6.55817 6.76524 6.98858 7.86006 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032529 B = 0.003398 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.559710 B = 8239.032297 C = 8366.165348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 C -0.151 4.151 4 N -0.537 5.537 5 C 0.053 3.947 6 C -0.109 4.109 7 C -0.143 4.143 8 C 0.089 3.911 9 H 0.063 0.937 10 O -0.330 6.330 11 C -0.005 4.005 12 C -0.144 4.144 13 C -0.210 4.210 14 C 0.058 3.942 15 C -0.566 4.566 16 H 0.051 0.949 17 C 0.031 3.969 18 N -0.812 5.812 19 Si 1.088 2.912 20 H -0.256 1.256 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.229 4.229 24 C -0.102 4.102 25 C 0.067 3.933 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.284 0.716 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.041 0.959 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -3.061 -20.536 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 C -0.208 4.208 4 N -0.263 5.263 5 C -0.075 4.075 6 C -0.147 4.147 7 C -0.181 4.181 8 C 0.033 3.967 9 H 0.081 0.919 10 O -0.245 6.245 11 C -0.049 4.049 12 C -0.163 4.163 13 C -0.229 4.229 14 C 0.055 3.945 15 C -0.593 4.593 16 H 0.069 0.931 17 C -0.188 4.188 18 N -0.433 5.433 19 Si 0.907 3.093 20 H -0.181 1.181 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.248 4.248 24 C -0.120 4.120 25 C -0.061 4.061 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.060 0.940 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.897 -2.782 -19.244 22.795 hybrid contribution 1.160 -0.174 -0.772 1.404 sum -10.737 -2.956 -20.016 22.905 Atomic orbital electron populations 1.22457 0.96863 1.02422 1.02522 1.21788 0.93285 0.95353 0.92518 1.21968 1.01585 0.94985 1.02306 1.62073 1.59878 1.02762 1.01571 1.22206 0.97087 0.88709 0.99474 1.21540 1.01817 0.98901 0.92413 1.22126 1.01497 0.95167 0.99296 1.22270 0.99623 0.91352 0.83499 0.91944 1.85800 1.48901 1.68196 1.21616 1.18563 0.94454 1.02245 0.89632 1.20773 0.96199 1.00180 0.99101 1.20702 1.02576 1.03666 0.95971 1.17805 0.92037 0.91091 0.93560 1.20378 1.01776 1.41678 0.95489 0.93058 1.28199 1.08773 0.88617 0.93233 1.70633 1.07877 1.23966 1.40812 0.83484 0.70238 0.79315 0.76245 1.18138 1.19292 1.19431 1.20699 1.00320 1.04418 0.99392 1.19947 1.00265 0.99885 0.91949 1.21880 0.98347 0.97763 0.88076 0.90666 0.91921 0.93586 0.88455 0.92460 0.90461 0.93167 0.88713 0.93958 0.91425 0.89272 0.92497 0.91652 0.85605 0.88268 0.90518 0.87531 0.85911 0.94042 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.47 71.98 0.61 -1.94 16 2 C 0.08 1.22 3.10 44.92 0.14 1.36 16 3 C -0.15 -2.38 8.69 71.98 0.63 -1.75 16 4 N -0.54 -10.80 4.71 -871.14 -4.10 -14.90 16 5 C 0.05 0.91 4.77 86.32 0.41 1.32 16 6 C -0.11 -2.15 6.09 30.64 0.19 -1.96 16 7 C -0.14 -3.79 5.26 30.67 0.16 -3.63 16 8 C 0.09 2.70 2.28 30.64 0.07 2.77 16 9 H 0.06 2.04 6.31 -2.39 -0.02 2.02 16 10 O -0.33 -12.48 9.79 -89.86 -0.88 -13.36 16 11 C -0.01 -0.23 6.62 22.79 0.15 -0.08 16 12 C -0.14 -6.21 8.17 22.11 0.18 -6.03 16 13 C -0.21 -10.23 9.74 22.48 0.22 -10.01 16 14 C 0.06 3.06 5.24 -21.28 -0.11 2.95 16 15 C -0.57 -31.89 9.26 23.40 0.22 -31.67 16 16 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 17 C 0.03 1.66 5.09 85.24 0.43 2.09 16 18 N -0.81 -44.23 13.66 21.82 0.30 -43.93 16 19 Si 1.09 48.29 25.84 68.60 1.77 50.07 16 20 H -0.26 -10.63 6.52 99.48 0.65 -9.98 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.23 -11.38 7.69 22.49 0.17 -11.21 16 24 C -0.10 -4.59 9.92 22.11 0.22 -4.37 16 25 C 0.07 1.66 4.32 86.33 0.37 2.04 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.82 6.48 -2.38 -0.02 0.80 16 28 H 0.05 0.76 6.75 -2.39 -0.02 0.75 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.90 6.19 -2.39 -0.01 0.88 16 33 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 34 H 0.04 0.71 6.59 -2.39 -0.02 0.70 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.70 6.84 -2.38 -0.02 1.69 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.13 4.72 5.36 -2.91 -0.02 4.70 16 40 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.28 15.32 8.73 -92.71 -0.81 14.51 16 42 H 0.11 5.22 4.90 -2.91 -0.01 5.21 16 43 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 44 H 0.04 1.03 6.82 -2.39 -0.02 1.01 16 45 H 0.08 2.10 5.84 -2.39 -0.01 2.08 16 Total: -1.00 -59.29 339.52 2.02 -57.27 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.87 Total: 25.00 kcal Atomic # 6 Polarization: -64.19 SS G_CDS: 4.06 Total: -60.13 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -3.81 Total: -58.84 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.88 Total: -13.36 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.77 Total: 50.07 kcal Total: -59.29 2.02 -57.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.622 kcal (2) G-P(sol) polarization free energy of solvation -59.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds