Wall clock time and date at job start Tue Mar 31 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 N 1.46901 * 109.46965 * 119.99626 * 2 1 3 5 5 C 1.46850 * 110.99771 * 55.79026 * 4 2 1 6 6 C 1.53171 * 109.55466 * 185.83382 * 5 4 2 7 7 C 1.53115 * 109.21422 * 300.86630 * 6 5 4 8 8 C 1.53120 * 109.21180 * 57.62128 * 7 6 5 9 9 H 1.08999 * 109.50407 * 62.29802 * 8 7 6 10 10 O 1.42900 * 109.50222 * 182.37785 * 8 7 6 11 11 C 1.35680 * 116.99715 * 276.39077 * 10 8 7 12 12 C 1.39304 * 119.81661 * 4.96444 * 11 10 8 13 13 C 1.36450 * 120.18156 * 179.76297 * 12 11 10 14 14 C 1.40825 * 119.81186 * 0.51546 * 13 12 11 15 15 C 1.41209 * 120.18279 * 179.72051 * 14 13 12 16 16 H 1.08001 * 119.99671 * 26.50305 * 15 14 13 17 17 C 1.39892 * 120.00310 * 206.50561 * 15 14 13 18 18 N 1.30881 * 120.00060 * 13.17274 * 17 15 14 19 19 Si 1.86799 * 120.00061 * 193.16944 * 17 15 14 20 20 H 1.48504 * 109.47200 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46822 * 119.99990 * 19 17 15 22 22 H 1.48498 * 109.47611 * 239.99935 * 19 17 15 23 23 C 1.40837 * 119.64246 * 359.74503 * 14 13 12 24 24 C 1.36439 * 119.81072 * 359.97438 * 23 14 13 25 25 C 1.46849 * 110.99913 * 179.97438 * 4 2 1 26 26 H 1.09003 * 109.46717 * 60.00423 * 1 2 3 27 27 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47292 * 299.99823 * 1 2 3 29 29 H 1.08999 * 109.46977 * 239.99478 * 2 1 3 30 30 H 1.09001 * 109.46806 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47093 * 299.99347 * 3 2 1 32 32 H 1.08999 * 109.47326 * 59.99592 * 3 2 1 33 33 H 1.08992 * 109.46798 * 305.85755 * 5 4 2 34 34 H 1.09007 * 109.45983 * 65.83290 * 5 4 2 35 35 H 1.08997 * 109.59066 * 180.90845 * 6 5 4 36 36 H 1.09007 * 109.48351 * 60.75466 * 6 5 4 37 37 H 1.09003 * 109.51718 * 297.68922 * 7 6 5 38 38 H 1.08996 * 109.52787 * 177.56403 * 7 6 5 39 39 H 1.08003 * 119.91165 * 0.02767 * 12 11 10 40 40 H 1.07997 * 120.08909 * 180.25675 * 13 12 11 41 41 H 0.96997 * 120.00369 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.09721 * 180.02562 * 23 14 13 43 43 H 1.08000 * 119.90931 * 179.97438 * 24 23 14 44 44 H 1.09004 * 109.45807 * 54.15006 * 25 4 2 45 45 H 1.08993 * 109.45339 * 294.17341 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4683 -2.0508 1.2848 6 6 1.8810 -2.6890 2.6147 7 6 3.4092 -2.7305 2.7010 8 6 3.9605 -1.3089 2.5609 9 1 3.5987 -0.6953 3.3859 10 8 5.3888 -1.3466 2.5850 11 6 5.9838 -1.3724 3.8042 12 6 5.2030 -1.4661 4.9541 13 6 5.7938 -1.4974 6.1836 14 6 7.1962 -1.4239 6.2887 15 6 7.8154 -1.4497 7.5575 16 1 7.3247 -1.9354 8.3880 17 6 9.0644 -0.8462 7.7388 18 7 9.5424 -0.0434 6.8224 19 14 10.0498 -1.1862 9.2888 20 1 9.2943 -2.1214 10.1606 21 1 11.3537 -1.7956 8.9227 22 1 10.2853 0.0874 10.0151 23 6 7.9778 -1.3238 5.1214 24 6 7.3718 -1.2995 3.8993 25 6 3.4876 -0.7126 1.2331 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.3810 -2.0059 1.2258 34 1 1.8523 -2.6511 0.4599 35 1 1.4856 -3.7031 2.6717 36 1 1.4859 -2.0969 3.4402 37 1 3.8024 -3.3544 1.8983 38 1 3.7086 -3.1441 3.6639 39 1 4.1274 -1.5183 4.8719 40 1 5.1873 -1.5743 7.0739 41 1 10.4083 0.3754 6.9482 42 1 9.0539 -1.2673 5.1934 43 1 7.9696 -1.2224 3.0031 44 1 3.8670 0.3048 1.1367 45 1 3.8613 -1.3193 0.4085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:08 Heat of formation + Delta-G solvation = -23.287573 kcal Electronic energy + Delta-G solvation = -23091.348240 eV Core-core repulsion = 19880.327027 eV Total energy + Delta-G solvation = -3211.021213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83459 -38.33815 -36.41788 -34.53403 -33.23987 -30.84532 -30.39668 -29.35717 -28.89683 -27.22324 -24.93155 -24.12130 -22.82505 -21.09889 -20.74952 -20.09993 -19.58190 -17.33216 -17.09389 -16.41064 -15.32209 -15.06918 -14.96535 -14.56879 -14.25249 -13.99605 -13.86700 -13.46356 -13.19833 -12.88044 -12.57280 -12.51207 -12.33738 -12.11000 -12.01531 -11.83927 -11.72247 -11.32007 -11.24832 -11.16738 -10.99692 -10.89795 -10.78325 -10.51766 -10.38936 -10.29001 -9.78588 -9.63230 -9.26287 -9.02080 -8.39634 -7.59255 -6.94261 -6.65133 -4.22976 2.80421 2.99703 3.11205 3.16449 3.22653 3.50818 3.98883 4.33096 4.67548 4.75486 4.78272 4.84107 5.01297 5.05671 5.15777 5.31465 5.40430 5.46909 5.49987 5.53136 5.64204 5.69264 5.70971 5.73059 5.81847 5.87907 6.01052 6.03769 6.06286 6.12018 6.14572 6.23202 6.35288 6.46574 6.78202 6.99575 7.02891 7.04158 7.17077 7.24855 7.53470 7.60931 7.84737 8.05143 8.25822 8.51325 8.70679 8.95004 9.03306 10.28983 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.003093 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.588434 B = 9051.942767 C = 9356.227003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 C -0.149 4.149 4 N -0.530 5.530 5 C 0.050 3.950 6 C -0.114 4.114 7 C -0.147 4.147 8 C 0.098 3.902 9 H 0.074 0.926 10 O -0.325 6.325 11 C 0.000 4.000 12 C -0.169 4.169 13 C -0.194 4.194 14 C 0.086 3.914 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.805 5.805 19 Si 0.908 3.092 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.276 1.276 23 C -0.130 4.130 24 C -0.124 4.124 25 C 0.061 3.939 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.278 0.722 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 -0.975 -11.123 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 C -0.207 4.207 4 N -0.257 5.257 5 C -0.078 4.078 6 C -0.151 4.151 7 C -0.184 4.184 8 C 0.040 3.960 9 H 0.092 0.908 10 O -0.240 6.240 11 C -0.044 4.044 12 C -0.188 4.188 13 C -0.214 4.214 14 C 0.083 3.917 15 C -0.493 4.493 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.433 5.433 19 Si 0.733 3.267 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.067 4.067 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.226 -0.560 -10.935 17.170 hybrid contribution 0.646 -0.511 0.171 0.841 sum -12.580 -1.071 -10.764 16.591 Atomic orbital electron populations 1.21927 0.94333 1.01932 1.02256 1.21577 0.95523 0.95187 0.90663 1.21919 1.01499 0.95079 1.02153 1.61845 1.07558 1.17227 1.39088 1.22236 0.99921 0.88360 0.97246 1.21561 0.95719 1.00340 0.97520 1.22172 0.95149 0.97881 1.03243 1.21933 0.80767 0.95656 0.97623 0.90781 1.85811 1.18748 1.90818 1.28630 1.18591 0.92022 1.11251 0.82496 1.20468 0.97379 1.07810 0.93095 1.20604 0.94789 1.10987 0.95042 1.17606 0.90565 0.90026 0.93469 1.19487 1.01875 1.31898 0.96041 0.90659 1.25860 0.97513 0.93009 0.97964 1.69815 1.17907 1.21568 1.33964 0.86261 0.79709 0.79043 0.81648 1.18581 1.19857 1.20112 1.21038 1.00252 1.03340 0.90293 1.19862 0.90760 1.05994 0.97681 1.21999 0.86788 1.01623 0.96290 0.92283 0.92506 0.91609 0.94371 0.92209 0.92329 0.91576 0.90240 0.95027 0.91299 0.90985 0.91783 0.90656 0.88425 0.88798 0.91118 0.85439 0.88599 0.89650 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.84 37.16 0.33 -0.87 16 2 C 0.08 0.79 2.68 -67.71 -0.18 0.61 16 3 C -0.15 -1.43 8.97 37.16 0.33 -1.10 16 4 N -0.53 -6.39 4.53 -226.60 -1.03 -7.41 16 5 C 0.05 0.54 5.13 -3.76 -0.02 0.52 16 6 C -0.11 -1.33 6.11 -26.58 -0.16 -1.49 16 7 C -0.15 -2.17 5.24 -26.61 -0.14 -2.31 16 8 C 0.10 1.64 2.28 -26.65 -0.06 1.57 16 9 H 0.07 1.33 6.36 -51.93 -0.33 1.00 16 10 O -0.32 -6.73 9.80 -18.74 -0.18 -6.91 16 11 C 0.00 -0.01 6.62 -38.78 -0.26 -0.26 16 12 C -0.17 -3.86 8.14 -39.83 -0.32 -4.18 16 13 C -0.19 -4.83 9.74 -39.25 -0.38 -5.21 16 14 C 0.09 2.31 5.57 -106.81 -0.59 1.71 16 15 C -0.46 -12.42 9.05 -37.84 -0.34 -12.76 16 16 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 17 C 0.07 1.84 5.22 -17.34 -0.09 1.75 16 18 N -0.81 -21.13 10.81 55.54 0.60 -20.53 16 19 Si 0.91 18.98 29.58 -169.99 -5.03 13.95 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 23 C -0.13 -3.43 8.62 -39.25 -0.34 -3.77 16 24 C -0.12 -3.04 9.92 -39.83 -0.40 -3.44 16 25 C 0.06 0.86 4.87 -3.83 -0.02 0.84 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.44 6.22 -51.93 -0.32 0.11 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.62 6.28 -51.93 -0.33 0.29 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.74 5.90 -51.93 -0.31 0.43 16 34 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.22 6.76 -51.93 -0.35 0.87 16 39 H 0.10 1.98 5.32 -52.48 -0.28 1.70 16 40 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 42 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 44 H 0.09 1.22 6.01 -51.93 -0.31 0.91 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -27.88 345.72 -10.24 -38.12 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.17 Total: 5.97 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -2.64 Total: -28.40 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: -0.43 Total: -27.94 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.18 Total: -6.91 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.88 -10.24 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.832 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds