Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 N 1.46901 * 109.46965 * 119.99626 * 2 1 3 5 5 C 1.46850 * 110.99771 * 55.79026 * 4 2 1 6 6 C 1.53171 * 109.55466 * 185.83382 * 5 4 2 7 7 C 1.53115 * 109.21422 * 300.86630 * 6 5 4 8 8 C 1.53120 * 109.21180 * 57.62128 * 7 6 5 9 9 H 1.08999 * 109.50407 * 62.29802 * 8 7 6 10 10 O 1.42900 * 109.50222 * 182.37785 * 8 7 6 11 11 C 1.35680 * 116.99715 * 276.39077 * 10 8 7 12 12 C 1.39304 * 119.81661 * 4.96444 * 11 10 8 13 13 C 1.36450 * 120.18156 * 179.76297 * 12 11 10 14 14 C 1.40825 * 119.81186 * 0.51546 * 13 12 11 15 15 C 1.41209 * 120.18279 * 179.72051 * 14 13 12 16 16 H 1.08001 * 119.99671 * 26.50305 * 15 14 13 17 17 C 1.39892 * 120.00310 * 206.50561 * 15 14 13 18 18 N 1.30881 * 120.00060 * 13.17274 * 17 15 14 19 19 Si 1.86799 * 120.00061 * 193.16944 * 17 15 14 20 20 H 1.48504 * 109.47200 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46822 * 119.99990 * 19 17 15 22 22 H 1.48498 * 109.47611 * 239.99935 * 19 17 15 23 23 C 1.40837 * 119.64246 * 359.74503 * 14 13 12 24 24 C 1.36439 * 119.81072 * 359.97438 * 23 14 13 25 25 C 1.46849 * 110.99913 * 179.97438 * 4 2 1 26 26 H 1.09003 * 109.46717 * 60.00423 * 1 2 3 27 27 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47292 * 299.99823 * 1 2 3 29 29 H 1.08999 * 109.46977 * 239.99478 * 2 1 3 30 30 H 1.09001 * 109.46806 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47093 * 299.99347 * 3 2 1 32 32 H 1.08999 * 109.47326 * 59.99592 * 3 2 1 33 33 H 1.08992 * 109.46798 * 305.85755 * 5 4 2 34 34 H 1.09007 * 109.45983 * 65.83290 * 5 4 2 35 35 H 1.08997 * 109.59066 * 180.90845 * 6 5 4 36 36 H 1.09007 * 109.48351 * 60.75466 * 6 5 4 37 37 H 1.09003 * 109.51718 * 297.68922 * 7 6 5 38 38 H 1.08996 * 109.52787 * 177.56403 * 7 6 5 39 39 H 1.08003 * 119.91165 * 0.02767 * 12 11 10 40 40 H 1.07997 * 120.08909 * 180.25675 * 13 12 11 41 41 H 0.96997 * 120.00369 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.09721 * 180.02562 * 23 14 13 43 43 H 1.08000 * 119.90931 * 179.97438 * 24 23 14 44 44 H 1.09004 * 109.45807 * 54.15006 * 25 4 2 45 45 H 1.08993 * 109.45339 * 294.17341 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4683 -2.0508 1.2848 6 6 1.8810 -2.6890 2.6147 7 6 3.4092 -2.7305 2.7010 8 6 3.9605 -1.3089 2.5609 9 1 3.5987 -0.6953 3.3859 10 8 5.3888 -1.3466 2.5850 11 6 5.9838 -1.3724 3.8042 12 6 5.2030 -1.4661 4.9541 13 6 5.7938 -1.4974 6.1836 14 6 7.1962 -1.4239 6.2887 15 6 7.8154 -1.4497 7.5575 16 1 7.3247 -1.9354 8.3880 17 6 9.0644 -0.8462 7.7388 18 7 9.5424 -0.0434 6.8224 19 14 10.0498 -1.1862 9.2888 20 1 9.2943 -2.1214 10.1606 21 1 11.3537 -1.7956 8.9227 22 1 10.2853 0.0874 10.0151 23 6 7.9778 -1.3238 5.1214 24 6 7.3718 -1.2995 3.8993 25 6 3.4876 -0.7126 1.2331 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.3810 -2.0059 1.2258 34 1 1.8523 -2.6511 0.4599 35 1 1.4856 -3.7031 2.6717 36 1 1.4859 -2.0969 3.4402 37 1 3.8024 -3.3544 1.8983 38 1 3.7086 -3.1441 3.6639 39 1 4.1274 -1.5183 4.8719 40 1 5.1873 -1.5743 7.0739 41 1 10.4083 0.3754 6.9482 42 1 9.0539 -1.2673 5.1934 43 1 7.9696 -1.2224 3.0031 44 1 3.8670 0.3048 1.1367 45 1 3.8613 -1.3193 0.4085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -37.654061 kcal Electronic energy + Delta-G solvation = -23091.971218 eV Core-core repulsion = 19880.327027 eV Total energy + Delta-G solvation = -3211.644190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17698 -39.76408 -38.11055 -35.65311 -35.07170 -32.02667 -31.74248 -30.98490 -30.65568 -28.03896 -26.75335 -25.22363 -24.16169 -22.69346 -22.43722 -21.21825 -20.75759 -19.25201 -18.68142 -17.50116 -17.05978 -16.38960 -16.01966 -15.96567 -15.70068 -15.55584 -15.00313 -14.75949 -14.42907 -14.21997 -14.11253 -13.91187 -13.78078 -13.49838 -13.19858 -12.97527 -12.87207 -12.74464 -12.65852 -12.45007 -12.35742 -12.13837 -12.09466 -11.82127 -11.68491 -11.60007 -11.38341 -11.16857 -11.06262 -10.83773 -9.55140 -9.33050 -8.87265 -8.55752 -6.23850 0.94717 1.03392 1.40235 1.51131 1.55222 2.23579 2.30427 2.75444 3.13743 3.68045 3.73808 3.77741 3.96230 4.03837 4.08345 4.17456 4.30214 4.33272 4.38701 4.41891 4.50231 4.53033 4.67048 4.76678 4.80615 4.87642 4.91062 4.96132 4.98219 5.01830 5.06973 5.08054 5.19320 5.23922 5.27039 5.33346 5.35447 5.42711 5.60119 5.66229 5.89938 6.04769 6.07335 6.16490 6.28080 6.58527 6.81967 6.96636 7.10452 8.40609 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.003093 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.588434 B = 9051.942767 C = 9356.227003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.148 4.148 4 N -0.537 5.537 5 C 0.050 3.950 6 C -0.107 4.107 7 C -0.142 4.142 8 C 0.091 3.909 9 H 0.062 0.938 10 O -0.334 6.334 11 C 0.009 3.991 12 C -0.164 4.164 13 C -0.205 4.205 14 C 0.054 3.946 15 C -0.497 4.497 16 H 0.075 0.925 17 C 0.030 3.970 18 N -0.837 5.837 19 Si 0.985 3.015 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.267 1.267 23 C -0.148 4.148 24 C -0.136 4.136 25 C 0.070 3.930 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.286 0.714 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 -1.296 -11.727 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.206 4.206 4 N -0.264 5.264 5 C -0.077 4.077 6 C -0.145 4.145 7 C -0.180 4.180 8 C 0.034 3.966 9 H 0.080 0.920 10 O -0.249 6.249 11 C -0.035 4.035 12 C -0.183 4.183 13 C -0.224 4.224 14 C 0.052 3.948 15 C -0.528 4.528 16 H 0.093 0.907 17 C -0.183 4.183 18 N -0.465 5.465 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.167 4.167 24 C -0.155 4.155 25 C -0.058 4.058 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.998 -0.881 -11.564 18.959 hybrid contribution 1.067 -0.388 0.212 1.155 sum -13.931 -1.268 -11.352 18.015 Atomic orbital electron populations 1.21895 0.92564 1.02632 1.02815 1.21702 0.96857 0.94899 0.89770 1.21918 1.00680 0.95225 1.02728 1.61883 1.05839 1.18231 1.40480 1.22311 1.01193 0.87592 0.96650 1.21560 0.93052 1.01834 0.98075 1.22124 0.97545 0.96143 1.02225 1.22240 0.78445 0.97081 0.98816 0.91974 1.85800 1.21374 1.90516 1.27211 1.18645 0.91841 1.09424 0.83609 1.20688 0.98724 1.06580 0.92264 1.20826 0.94336 1.10966 0.96298 1.17950 0.91724 0.91183 0.93958 1.19732 1.03459 1.33404 0.96165 0.90718 1.26737 0.97978 0.92128 1.01435 1.69876 1.18573 1.22095 1.35924 0.85121 0.77970 0.79075 0.77266 1.18225 1.19004 1.19220 1.20961 0.99698 1.04970 0.91103 1.20032 0.91844 1.06069 0.97571 1.21845 0.88526 1.00973 0.94493 0.90688 0.91709 0.92123 0.94139 0.93482 0.90437 0.92328 0.87971 0.94680 0.89080 0.91287 0.91798 0.92373 0.85823 0.87764 0.90350 0.86899 0.87349 0.90200 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.84 71.98 0.64 -1.25 16 2 C 0.08 1.33 2.68 44.92 0.12 1.45 16 3 C -0.15 -2.61 8.97 71.98 0.65 -1.97 16 4 N -0.54 -11.85 4.53 -870.82 -3.94 -15.80 16 5 C 0.05 0.94 5.13 86.37 0.44 1.38 16 6 C -0.11 -2.25 6.11 30.69 0.19 -2.07 16 7 C -0.14 -4.03 5.24 30.67 0.16 -3.87 16 8 C 0.09 2.97 2.28 30.65 0.07 3.04 16 9 H 0.06 2.18 6.36 -2.39 -0.02 2.17 16 10 O -0.33 -13.76 9.80 -89.98 -0.88 -14.64 16 11 C 0.01 0.41 6.62 22.79 0.15 0.56 16 12 C -0.16 -7.50 8.14 22.11 0.18 -7.32 16 13 C -0.20 -10.33 9.74 22.49 0.22 -10.11 16 14 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 15 C -0.50 -27.43 9.05 23.40 0.21 -27.22 16 16 H 0.07 3.97 7.88 -2.91 -0.02 3.94 16 17 C 0.03 1.55 5.22 85.24 0.44 1.99 16 18 N -0.84 -44.95 10.81 21.82 0.24 -44.71 16 19 Si 0.98 39.14 29.58 68.60 2.03 41.17 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.15 -8.09 8.62 22.49 0.19 -7.90 16 24 C -0.14 -6.84 9.92 22.11 0.22 -6.62 16 25 C 0.07 1.90 4.87 86.33 0.42 2.32 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.76 6.22 -2.39 -0.01 0.75 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.94 6.28 -2.39 -0.01 0.92 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.51 5.90 -2.39 -0.01 1.49 16 34 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.84 6.76 -2.39 -0.02 1.82 16 39 H 0.12 4.92 5.32 -2.91 -0.02 4.90 16 40 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 42 H 0.11 6.41 6.13 -2.91 -0.02 6.39 16 43 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 44 H 0.08 2.25 6.01 -2.38 -0.01 2.23 16 45 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -61.00 345.72 2.59 -58.41 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.96 Total: 30.25 kcal Atomic # 6 Polarization: -58.88 SS G_CDS: 4.19 Total: -54.69 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -3.71 Total: -60.51 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.88 Total: -14.64 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -61.00 2.59 -58.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.755 kcal (2) G-P(sol) polarization free energy of solvation -61.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds