Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46609 * 2 1 4 4 N 1.46895 * 109.46999 * 119.99874 * 2 1 3 5 5 C 1.46848 * 110.99915 * 180.02562 * 4 2 1 6 6 C 1.53037 * 109.52262 * 185.83809 * 5 4 2 7 7 C 1.53116 * 109.28365 * 300.82253 * 6 5 4 8 8 O 1.42897 * 109.52491 * 177.55923 * 7 6 5 9 9 C 1.35677 * 116.99599 * 155.61983 * 8 7 6 10 10 C 1.39319 * 119.81186 * 185.09933 * 9 8 7 11 11 C 1.36438 * 120.18130 * 179.76022 * 10 9 8 12 12 C 1.40837 * 119.81130 * 0.51457 * 11 10 9 13 13 C 1.41215 * 120.17965 * 179.71725 * 12 11 10 14 14 H 1.07998 * 120.00053 * 156.72845 * 13 12 11 15 15 C 1.39894 * 120.00114 * 336.73377 * 13 12 11 16 16 N 1.30885 * 119.99850 * 341.11020 * 15 13 12 17 17 Si 1.86796 * 120.00227 * 161.10723 * 15 13 12 18 18 H 1.48501 * 109.46812 * 94.76583 * 17 15 13 19 19 H 1.48501 * 109.47460 * 214.76531 * 17 15 13 20 20 H 1.48504 * 109.47110 * 334.76928 * 17 15 13 21 21 C 1.40832 * 119.64076 * 359.74016 * 12 11 10 22 22 C 1.36438 * 119.81313 * 0.02562 * 21 12 11 23 23 C 1.53118 * 109.15791 * 57.65099 * 7 6 5 24 24 C 1.46846 * 111.00200 * 304.21309 * 4 2 1 25 25 H 1.09005 * 109.47501 * 299.99639 * 1 2 3 26 26 H 1.08998 * 109.47586 * 60.00213 * 1 2 3 27 27 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47002 * 239.99900 * 2 1 3 29 29 H 1.09001 * 109.47079 * 60.00473 * 3 2 1 30 30 H 1.09004 * 109.46709 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47170 * 299.99703 * 3 2 1 32 32 H 1.09002 * 109.46212 * 65.82805 * 5 4 2 33 33 H 1.08994 * 109.46128 * 305.86024 * 5 4 2 34 34 H 1.09003 * 109.50177 * 180.87597 * 6 5 4 35 35 H 1.09003 * 109.50252 * 60.76528 * 6 5 4 36 36 H 1.09000 * 109.52104 * 297.68549 * 7 6 5 37 37 H 1.07994 * 119.90950 * 0.02702 * 10 9 8 38 38 H 1.08001 * 120.09508 * 180.25417 * 11 10 9 39 39 H 0.96996 * 119.99707 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.09303 * 179.97438 * 21 12 11 41 41 H 1.07994 * 119.90724 * 179.97438 * 22 21 12 42 42 H 1.09004 * 109.50132 * 62.29487 * 23 7 6 43 43 H 1.09005 * 109.50375 * 182.40472 * 23 7 6 44 44 H 1.09002 * 109.46546 * 294.17428 * 24 4 2 45 45 H 1.08999 * 109.46341 * 54.15787 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4876 -0.7115 1.2337 6 6 3.9606 -1.5626 2.4143 7 6 3.4087 -0.9735 3.7155 8 8 3.8001 -1.7965 4.8161 9 6 3.8568 -1.2067 6.0366 10 6 4.3331 -1.9246 7.1314 11 6 4.3980 -1.3373 8.3612 12 6 3.9716 -0.0050 8.5242 13 6 4.0297 0.6086 9.7948 14 1 4.0728 1.6849 9.8732 15 6 4.0316 -0.1777 10.9519 16 7 3.6157 -1.4177 10.9011 17 14 4.6276 0.5421 12.5693 18 1 3.4667 1.0547 13.3405 19 1 5.3179 -0.5117 13.3556 20 1 5.5719 1.6555 12.2975 21 6 3.4865 0.7119 7.4133 22 6 3.4326 0.1114 6.1894 23 6 1.8806 -0.9200 3.6344 24 6 1.4683 -0.0872 2.4185 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.8615 0.3061 1.3468 33 1 3.8670 -1.1365 0.3045 34 1 5.0501 -1.5638 2.4487 35 1 3.5986 -2.5838 2.2949 36 1 3.8025 0.0332 3.8553 37 1 4.6559 -2.9475 7.0055 38 1 4.7713 -1.8939 9.2082 39 1 3.6174 -1.9629 11.7033 40 1 3.1572 1.7338 7.5301 41 1 3.0605 0.6596 5.3366 42 1 1.4859 -1.9311 3.5343 43 1 1.4839 -0.4621 4.5406 44 1 1.8520 0.9274 2.5258 45 1 0.3808 -0.0589 2.3501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -23.773727 kcal Electronic energy + Delta-G solvation = -23093.432433 eV Core-core repulsion = 19882.390139 eV Total energy + Delta-G solvation = -3211.042294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91728 -38.46626 -36.50412 -34.25341 -33.19313 -31.02314 -30.15152 -29.34389 -28.88040 -27.45010 -25.03509 -24.03144 -23.02761 -21.45359 -20.62333 -20.21052 -19.17576 -17.32417 -17.08746 -16.27333 -15.31328 -15.19588 -14.84873 -14.75138 -14.22107 -14.00518 -13.92676 -13.67964 -13.10690 -12.94204 -12.70003 -12.31827 -12.27923 -12.11570 -12.06607 -11.73874 -11.70803 -11.49600 -11.28059 -11.12451 -11.01059 -10.93423 -10.83175 -10.72478 -10.34622 -10.21746 -9.82630 -9.71198 -9.29256 -8.94833 -8.36740 -7.60428 -6.99516 -6.70790 -4.22295 2.79952 2.98485 3.09226 3.13291 3.23688 3.75244 3.96172 4.10458 4.62048 4.63936 4.80526 4.86241 4.96413 5.09291 5.21187 5.26843 5.33390 5.38435 5.48412 5.54538 5.59348 5.66681 5.68536 5.70295 5.76090 5.80087 5.99393 6.01591 6.08666 6.10839 6.16363 6.22766 6.35728 6.47942 6.79776 7.01384 7.02372 7.03216 7.14641 7.22746 7.51968 7.59192 7.84197 8.03226 8.23811 8.50885 8.69698 8.92343 9.02685 10.23025 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.003048 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.943826 B = 9184.601204 C = 9498.760571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.189 4.189 4 N -0.532 5.532 5 C 0.059 3.941 6 C -0.111 4.111 7 C 0.094 3.906 8 O -0.322 6.322 9 C -0.006 4.006 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.087 3.913 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.797 5.797 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.200 4.200 22 C -0.167 4.167 23 C -0.141 4.141 24 C 0.053 3.947 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.280 0.720 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 2.107 -17.021 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.248 4.248 4 N -0.256 5.256 5 C -0.069 4.069 6 C -0.149 4.149 7 C 0.036 3.964 8 O -0.237 6.237 9 C -0.049 4.049 10 C -0.140 4.140 11 C -0.155 4.155 12 C 0.085 3.915 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.141 4.141 16 N -0.423 5.423 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.219 4.219 22 C -0.186 4.186 23 C -0.179 4.179 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.960 1.218 -16.924 17.224 hybrid contribution 0.350 1.397 0.847 1.671 sum -2.611 2.616 -16.077 16.496 Atomic orbital electron populations 1.21921 0.94381 1.02535 1.01718 1.21692 0.95737 0.92294 0.93533 1.22508 1.01651 0.98281 1.02369 1.62226 1.07918 1.53552 1.01934 1.22045 0.87516 0.98641 0.98658 1.21601 1.00541 1.00716 0.92050 1.22073 0.93721 0.94549 0.86015 1.85879 1.85379 1.38247 1.14236 1.18594 1.09298 0.92888 0.84103 1.19847 1.04063 0.98457 0.91616 1.20991 1.02831 0.96664 0.95034 1.17580 0.89466 0.91945 0.92486 1.19453 1.45305 0.94492 0.90109 0.90633 1.25877 0.92559 0.94578 1.01135 1.69845 1.33348 1.08311 1.30842 0.86354 0.79780 0.79843 0.81048 1.19686 1.20070 1.18519 1.20550 1.08429 0.99740 0.93215 1.20427 1.06146 0.94463 0.97566 1.22165 0.96639 1.01734 0.97362 1.22149 1.00179 0.95857 0.89245 0.92303 0.92378 0.91747 0.90045 0.92301 0.92369 0.92177 0.94489 0.90450 0.90927 0.90318 0.92177 0.88572 0.85666 0.90959 0.88911 0.88744 0.90471 0.90567 0.94695 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.84 37.16 0.33 -0.89 16 2 C 0.08 0.69 3.03 -67.72 -0.20 0.48 16 3 C -0.19 -1.62 8.51 37.16 0.32 -1.30 16 4 N -0.53 -5.98 4.68 -226.69 -1.06 -7.04 16 5 C 0.06 0.66 4.89 -3.83 -0.02 0.64 16 6 C -0.11 -1.49 5.75 -26.65 -0.15 -1.64 16 7 C 0.09 1.54 2.17 -26.61 -0.06 1.48 16 8 O -0.32 -6.68 9.79 -18.73 -0.18 -6.86 16 9 C -0.01 -0.13 6.63 -38.78 -0.26 -0.39 16 10 C -0.12 -2.97 9.92 -39.83 -0.40 -3.37 16 11 C -0.14 -3.59 8.66 -39.25 -0.34 -3.93 16 12 C 0.09 2.36 5.59 -106.80 -0.60 1.76 16 13 C -0.46 -12.41 9.04 -37.83 -0.34 -12.76 16 14 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 15 C 0.08 1.91 5.12 -17.34 -0.09 1.82 16 16 N -0.80 -20.80 10.93 55.55 0.61 -20.19 16 17 Si 0.91 18.79 29.60 -169.99 -5.03 13.75 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 C -0.20 -4.95 9.74 -39.25 -0.38 -5.34 16 22 C -0.17 -3.81 8.18 -39.83 -0.33 -4.14 16 23 C -0.14 -2.13 5.36 -26.65 -0.14 -2.27 16 24 C 0.05 0.65 4.67 -3.83 -0.02 0.63 16 25 H 0.06 0.51 6.22 -51.93 -0.32 0.18 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.55 6.63 -51.93 -0.34 0.20 16 30 H 0.06 0.51 6.53 -51.93 -0.34 0.17 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.41 6.63 -51.93 -0.34 0.06 16 33 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.02 6.32 -51.93 -0.33 0.69 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.13 3.38 6.10 -52.49 -0.32 3.06 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 41 H 0.09 1.90 5.35 -52.49 -0.28 1.62 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.26 6.85 -51.93 -0.36 0.91 16 44 H 0.03 0.43 6.71 -51.93 -0.35 0.08 16 45 H 0.08 0.91 5.90 -51.93 -0.31 0.60 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -27.87 343.10 -10.24 -38.12 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.07 Total: 6.25 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.68 Total: -29.20 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: -0.45 Total: -27.23 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.18 Total: -6.86 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.87 -10.24 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.343 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds