Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46609 * 2 1 4 4 N 1.46895 * 109.46999 * 119.99874 * 2 1 3 5 5 C 1.46848 * 110.99915 * 180.02562 * 4 2 1 6 6 C 1.53037 * 109.52262 * 185.83809 * 5 4 2 7 7 C 1.53116 * 109.28365 * 300.82253 * 6 5 4 8 8 O 1.42897 * 109.52491 * 177.55923 * 7 6 5 9 9 C 1.35677 * 116.99599 * 155.61983 * 8 7 6 10 10 C 1.39319 * 119.81186 * 185.09933 * 9 8 7 11 11 C 1.36438 * 120.18130 * 179.76022 * 10 9 8 12 12 C 1.40837 * 119.81130 * 0.51457 * 11 10 9 13 13 C 1.41215 * 120.17965 * 179.71725 * 12 11 10 14 14 H 1.07998 * 120.00053 * 156.72845 * 13 12 11 15 15 C 1.39894 * 120.00114 * 336.73377 * 13 12 11 16 16 N 1.30885 * 119.99850 * 341.11020 * 15 13 12 17 17 Si 1.86796 * 120.00227 * 161.10723 * 15 13 12 18 18 H 1.48501 * 109.46812 * 94.76583 * 17 15 13 19 19 H 1.48501 * 109.47460 * 214.76531 * 17 15 13 20 20 H 1.48504 * 109.47110 * 334.76928 * 17 15 13 21 21 C 1.40832 * 119.64076 * 359.74016 * 12 11 10 22 22 C 1.36438 * 119.81313 * 0.02562 * 21 12 11 23 23 C 1.53118 * 109.15791 * 57.65099 * 7 6 5 24 24 C 1.46846 * 111.00200 * 304.21309 * 4 2 1 25 25 H 1.09005 * 109.47501 * 299.99639 * 1 2 3 26 26 H 1.08998 * 109.47586 * 60.00213 * 1 2 3 27 27 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47002 * 239.99900 * 2 1 3 29 29 H 1.09001 * 109.47079 * 60.00473 * 3 2 1 30 30 H 1.09004 * 109.46709 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47170 * 299.99703 * 3 2 1 32 32 H 1.09002 * 109.46212 * 65.82805 * 5 4 2 33 33 H 1.08994 * 109.46128 * 305.86024 * 5 4 2 34 34 H 1.09003 * 109.50177 * 180.87597 * 6 5 4 35 35 H 1.09003 * 109.50252 * 60.76528 * 6 5 4 36 36 H 1.09000 * 109.52104 * 297.68549 * 7 6 5 37 37 H 1.07994 * 119.90950 * 0.02702 * 10 9 8 38 38 H 1.08001 * 120.09508 * 180.25417 * 11 10 9 39 39 H 0.96996 * 119.99707 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.09303 * 179.97438 * 21 12 11 41 41 H 1.07994 * 119.90724 * 179.97438 * 22 21 12 42 42 H 1.09004 * 109.50132 * 62.29487 * 23 7 6 43 43 H 1.09005 * 109.50375 * 182.40472 * 23 7 6 44 44 H 1.09002 * 109.46546 * 294.17428 * 24 4 2 45 45 H 1.08999 * 109.46341 * 54.15787 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4876 -0.7115 1.2337 6 6 3.9606 -1.5626 2.4143 7 6 3.4087 -0.9735 3.7155 8 8 3.8001 -1.7965 4.8161 9 6 3.8568 -1.2067 6.0366 10 6 4.3331 -1.9246 7.1314 11 6 4.3980 -1.3373 8.3612 12 6 3.9716 -0.0050 8.5242 13 6 4.0297 0.6086 9.7948 14 1 4.0728 1.6849 9.8732 15 6 4.0316 -0.1777 10.9519 16 7 3.6157 -1.4177 10.9011 17 14 4.6276 0.5421 12.5693 18 1 3.4667 1.0547 13.3405 19 1 5.3179 -0.5117 13.3556 20 1 5.5719 1.6555 12.2975 21 6 3.4865 0.7119 7.4133 22 6 3.4326 0.1114 6.1894 23 6 1.8806 -0.9200 3.6344 24 6 1.4683 -0.0872 2.4185 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.8615 0.3061 1.3468 33 1 3.8670 -1.1365 0.3045 34 1 5.0501 -1.5638 2.4487 35 1 3.5986 -2.5838 2.2949 36 1 3.8025 0.0332 3.8553 37 1 4.6559 -2.9475 7.0055 38 1 4.7713 -1.8939 9.2082 39 1 3.6174 -1.9629 11.7033 40 1 3.1572 1.7338 7.5301 41 1 3.0605 0.6596 5.3366 42 1 1.4859 -1.9311 3.5343 43 1 1.4839 -0.4621 4.5406 44 1 1.8520 0.9274 2.5258 45 1 0.3808 -0.0589 2.3501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -38.298387 kcal Electronic energy + Delta-G solvation = -23094.062270 eV Core-core repulsion = 19882.390139 eV Total energy + Delta-G solvation = -3211.672130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18592 -39.87890 -38.19696 -35.55276 -34.87910 -32.12348 -31.68958 -31.00140 -30.45676 -28.11372 -26.84789 -25.24922 -24.12434 -23.05284 -22.43196 -21.43255 -20.21971 -19.23276 -18.73251 -17.27319 -17.04018 -16.38653 -16.20763 -15.88169 -15.72475 -15.24874 -15.10180 -14.97001 -14.45975 -14.27578 -14.08292 -13.97532 -13.64678 -13.42849 -13.21904 -12.98983 -12.84138 -12.72683 -12.62265 -12.44584 -12.41949 -12.30421 -11.96709 -11.89048 -11.67670 -11.61401 -11.48352 -11.16653 -11.10958 -10.76573 -9.55775 -9.22505 -8.91781 -8.60245 -6.22115 0.95316 1.02510 1.39450 1.49799 1.55941 2.22532 2.59368 2.71792 2.91305 3.68694 3.75160 3.78907 3.99957 4.03930 4.13635 4.25298 4.29839 4.32165 4.35366 4.38624 4.44101 4.57482 4.66754 4.74017 4.76916 4.86383 4.87033 4.90057 4.99090 5.03548 5.06793 5.14366 5.18314 5.22687 5.23407 5.31993 5.35075 5.41216 5.60539 5.66332 5.90324 6.05478 6.12594 6.20722 6.26814 6.57552 6.82468 6.94731 7.11709 8.35926 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.003048 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.943826 B = 9184.601204 C = 9498.760571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.186 4.186 4 N -0.540 5.540 5 C 0.064 3.936 6 C -0.105 4.105 7 C 0.085 3.915 8 O -0.332 6.332 9 C 0.003 3.997 10 C -0.134 4.134 11 C -0.155 4.155 12 C 0.056 3.944 13 C -0.499 4.499 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.829 5.829 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.210 4.210 22 C -0.162 4.162 23 C -0.136 4.136 24 C 0.062 3.938 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 2.908 -18.653 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.244 4.244 4 N -0.265 5.265 5 C -0.064 4.064 6 C -0.143 4.143 7 C 0.029 3.971 8 O -0.248 6.248 9 C -0.041 4.041 10 C -0.153 4.153 11 C -0.174 4.174 12 C 0.054 3.946 13 C -0.529 4.529 14 H 0.094 0.906 15 C -0.180 4.180 16 N -0.456 5.456 17 Si 0.802 3.198 18 H -0.188 1.188 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.230 4.230 22 C -0.181 4.181 23 C -0.174 4.174 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.132 2.018 -18.591 18.961 hybrid contribution 0.350 1.098 1.171 1.644 sum -2.782 3.117 -17.420 17.914 Atomic orbital electron populations 1.21910 0.93802 1.02357 1.02293 1.21787 0.96208 0.92553 0.92710 1.22470 1.01521 0.97830 1.02620 1.62218 1.07976 1.54103 1.02212 1.22040 0.87558 0.98447 0.98325 1.21605 1.00808 1.00738 0.91179 1.22445 0.94801 0.94129 0.85749 1.85875 1.85367 1.39409 1.14149 1.18659 1.07684 0.92827 0.84945 1.20023 1.04372 0.99210 0.91679 1.20921 1.04186 0.96907 0.95392 1.17928 0.90515 0.92594 0.93566 1.19712 1.47331 0.94800 0.91069 0.90640 1.26751 0.91899 0.94814 1.04553 1.69897 1.33767 1.09599 1.32334 0.85205 0.79306 0.79079 0.76173 1.18768 1.19071 1.18294 1.20780 1.08386 1.00315 0.93524 1.20653 1.05199 0.94430 0.97799 1.22082 0.95455 1.01669 0.98184 1.22032 1.00873 0.95159 0.88545 0.92841 0.90726 0.92288 0.88927 0.93260 0.92497 0.90732 0.94114 0.88263 0.90430 0.90808 0.92524 0.87406 0.87087 0.90165 0.87865 0.85983 0.91330 0.92400 0.94536 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.84 71.98 0.64 -1.40 16 2 C 0.08 1.15 3.03 44.92 0.14 1.28 16 3 C -0.19 -2.64 8.51 71.98 0.61 -2.03 16 4 N -0.54 -10.84 4.68 -871.12 -4.08 -14.91 16 5 C 0.06 1.25 4.89 86.33 0.42 1.67 16 6 C -0.11 -2.64 5.75 30.65 0.18 -2.47 16 7 C 0.09 2.71 2.17 30.67 0.07 2.78 16 8 O -0.33 -13.66 9.79 -89.95 -0.88 -14.54 16 9 C 0.00 0.13 6.63 22.79 0.15 0.28 16 10 C -0.13 -6.73 9.92 22.11 0.22 -6.51 16 11 C -0.15 -8.46 8.66 22.49 0.19 -8.27 16 12 C 0.06 3.12 5.59 -21.28 -0.12 3.00 16 13 C -0.50 -27.45 9.04 23.40 0.21 -27.24 16 14 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.03 1.74 5.12 85.24 0.44 2.18 16 16 N -0.83 -44.26 10.93 21.82 0.24 -44.02 16 17 Si 0.98 38.73 29.60 68.60 2.03 40.76 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 C -0.21 -10.59 9.74 22.48 0.22 -10.37 16 22 C -0.16 -7.38 8.18 22.11 0.18 -7.20 16 23 C -0.14 -3.98 5.36 30.65 0.16 -3.82 16 24 C 0.06 1.40 4.67 86.33 0.40 1.80 16 25 H 0.05 0.80 6.22 -2.38 -0.01 0.78 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 0.80 6.63 -2.39 -0.02 0.78 16 30 H 0.06 0.83 6.53 -2.38 -0.02 0.81 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.79 6.63 -2.39 -0.02 0.77 16 33 H 0.10 1.55 8.12 -2.39 -0.02 1.53 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.85 6.32 -2.39 -0.02 1.83 16 37 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.11 6.28 6.10 -2.91 -0.02 6.26 16 39 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.12 4.78 5.35 -2.91 -0.02 4.76 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.06 1.89 6.85 -2.38 -0.02 1.88 16 44 H 0.04 0.82 6.71 -2.39 -0.02 0.81 16 45 H 0.09 1.89 5.90 -2.39 -0.01 1.87 16 Total: -1.00 -60.79 343.10 2.39 -58.40 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.97 Total: 30.64 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 4.11 Total: -56.31 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -3.84 Total: -58.94 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.88 Total: -14.54 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -60.79 2.39 -58.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.101 kcal (2) G-P(sol) polarization free energy of solvation -60.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds