Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47309 * 2 1 4 4 N 1.46894 * 109.47174 * 119.99891 * 2 1 3 5 5 C 1.46849 * 111.00024 * 299.21018 * 4 2 1 6 6 C 1.53035 * 109.52267 * 174.16015 * 5 4 2 7 7 C 1.53119 * 109.27976 * 59.17924 * 6 5 4 8 8 C 1.53120 * 109.16271 * 302.34405 * 7 6 5 9 9 H 1.08994 * 109.53538 * 297.69303 * 8 7 6 10 10 O 1.42899 * 109.50156 * 177.59230 * 8 7 6 11 11 C 1.35642 * 116.99897 * 83.79819 * 10 8 7 12 12 C 1.38440 * 120.26461 * 354.69252 * 11 10 8 13 13 C 1.38308 * 120.05385 * 180.02562 * 12 11 10 14 14 C 1.38822 * 120.58769 * 359.97438 * 13 12 11 15 15 C 1.36491 * 120.54099 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.92578 * 0.02562 * 15 14 13 17 17 C 1.41151 * 120.28848 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00389 * 206.69130 * 17 16 15 19 19 C 1.39932 * 119.99996 * 26.68680 * 17 16 15 20 20 N 1.30862 * 120.00076 * 12.70921 * 19 17 16 21 21 Si 1.86801 * 120.00186 * 192.71127 * 19 17 16 22 22 H 1.48501 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47572 * 120.00344 * 21 19 17 24 24 H 1.48507 * 109.46985 * 240.00574 * 21 19 17 25 25 C 1.46853 * 111.00322 * 175.00098 * 4 2 1 26 26 H 1.09003 * 109.47571 * 300.00159 * 1 2 3 27 27 H 1.09004 * 109.47150 * 60.00334 * 1 2 3 28 28 H 1.09007 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47459 * 240.00361 * 2 1 3 30 30 H 1.09004 * 109.46741 * 299.99916 * 3 2 1 31 31 H 1.09003 * 109.46934 * 59.99451 * 3 2 1 32 32 H 1.08998 * 109.47197 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46502 * 294.17617 * 5 4 2 34 34 H 1.08994 * 109.45911 * 54.14722 * 5 4 2 35 35 H 1.09001 * 109.50634 * 179.12223 * 6 5 4 36 36 H 1.08997 * 109.50474 * 299.20071 * 6 5 4 37 37 H 1.08999 * 109.52256 * 182.43809 * 7 6 5 38 38 H 1.09003 * 109.52360 * 62.24942 * 7 6 5 39 39 H 1.08001 * 119.97546 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.71107 * 179.70326 * 13 12 11 41 41 H 1.08001 * 119.72955 * 180.02562 * 14 13 12 42 42 H 1.07995 * 120.03758 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00309 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.46290 * 65.82166 * 25 4 2 45 45 H 1.09005 * 109.46192 * 305.85850 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 1.5642 -0.0157 2.4205 6 6 1.9680 -0.8418 3.6439 7 6 3.4905 -1.0031 3.6649 8 6 3.9437 -1.6664 2.3613 9 1 3.5061 -2.6619 2.2876 10 8 5.3689 -1.7696 2.3489 11 6 5.9146 -2.8364 2.9846 12 6 5.1117 -3.7073 3.7011 13 6 5.6728 -4.7934 4.3480 14 6 7.0405 -5.0228 4.2868 15 6 7.8546 -4.1797 3.5873 16 6 7.3074 -3.0671 2.9215 17 6 8.1421 -2.1905 2.1954 18 1 7.8514 -1.1597 2.0559 19 6 9.3462 -2.6570 1.6565 20 7 9.5854 -3.9425 1.6047 21 14 10.6124 -1.4447 1.0109 22 1 10.1043 -0.0599 1.1827 23 1 11.8808 -1.6043 1.7663 24 1 10.8582 -1.7060 -0.4302 25 6 3.4827 -0.8164 1.1752 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.0227 0.9713 2.4813 34 1 0.4796 0.0888 2.3948 35 1 1.6436 -0.3315 4.5508 36 1 1.4982 -1.8238 3.5911 37 1 3.7791 -1.6272 4.5106 38 1 3.9594 -0.0234 3.7572 39 1 4.0463 -3.5385 3.7551 40 1 5.0419 -5.4665 4.9095 41 1 7.4639 -5.8754 4.7968 42 1 8.9175 -4.3661 3.5447 43 1 10.4200 -4.2659 1.2307 44 1 3.9322 0.1744 1.2417 45 1 3.7914 -1.2933 0.2449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -22.123864 kcal Electronic energy + Delta-G solvation = -23639.625118 eV Core-core repulsion = 20428.654368 eV Total energy + Delta-G solvation = -3210.970750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80642 -38.32957 -36.21488 -34.24020 -33.53140 -30.80576 -30.05327 -29.17789 -28.35079 -27.31009 -25.10878 -24.24588 -23.03953 -21.31628 -20.67625 -19.83313 -19.13224 -17.41587 -16.69235 -16.09641 -15.28607 -15.03126 -14.66355 -14.53997 -14.20098 -14.07545 -13.89474 -13.76289 -13.09557 -12.87237 -12.54865 -12.44986 -12.20093 -12.10396 -12.03310 -11.86958 -11.42392 -11.34456 -11.16692 -11.01066 -10.89238 -10.71724 -10.63963 -10.50922 -10.37511 -10.21776 -9.65844 -9.59047 -9.31322 -9.14842 -8.25692 -7.39102 -6.93194 -6.60362 -4.19479 2.79757 3.05069 3.13020 3.19435 3.23878 3.65316 4.01809 4.49000 4.72417 4.79608 4.88249 4.98062 5.06236 5.14856 5.22247 5.40833 5.42742 5.47293 5.57418 5.62959 5.70034 5.72209 5.79498 5.82610 5.91688 5.96802 6.04917 6.11935 6.13784 6.15769 6.19256 6.33528 6.42991 6.53011 6.59976 7.00995 7.10256 7.13150 7.18851 7.37357 7.46060 7.80689 7.85472 8.13028 8.28605 8.49351 8.78601 8.93478 9.15224 10.30954 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.004674 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.734717 B = 5988.691291 C = 7224.287071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 C -0.189 4.189 4 N -0.529 5.529 5 C 0.048 3.952 6 C -0.113 4.113 7 C -0.146 4.146 8 C 0.094 3.906 9 H 0.071 0.929 10 O -0.303 6.303 11 C 0.018 3.982 12 C -0.179 4.179 13 C -0.211 4.211 14 C -0.130 4.130 15 C -0.143 4.143 16 C 0.095 3.905 17 C -0.445 4.445 18 H 0.080 0.920 19 C 0.071 3.929 20 N -0.804 5.804 21 Si 0.909 3.091 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.276 1.276 25 C 0.063 3.937 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.126 0.874 43 H 0.277 0.723 44 H 0.044 0.956 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 7.373 -1.160 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.248 4.248 4 N -0.254 5.254 5 C -0.079 4.079 6 C -0.151 4.151 7 C -0.184 4.184 8 C 0.036 3.964 9 H 0.089 0.911 10 O -0.218 6.218 11 C -0.026 4.026 12 C -0.198 4.198 13 C -0.231 4.231 14 C -0.148 4.148 15 C -0.162 4.162 16 C 0.093 3.907 17 C -0.475 4.475 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.431 5.431 21 Si 0.734 3.266 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.065 4.065 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.105 6.892 -1.352 14.868 hybrid contribution 0.783 1.069 -0.226 1.344 sum -12.322 7.961 -1.578 14.755 Atomic orbital electron populations 1.21874 0.94385 1.02429 1.01467 1.21679 0.95566 0.92429 0.93430 1.22502 1.02021 0.98115 1.02129 1.62033 1.10581 1.50959 1.01830 1.22203 1.00178 0.95671 0.89866 1.21536 0.95945 1.00854 0.96785 1.22171 0.95275 1.01836 0.99105 1.21946 0.81861 0.98999 0.93547 0.91107 1.85931 1.18682 1.44120 1.73023 1.19178 0.92655 0.90074 1.00742 1.20669 0.97440 0.98354 1.03350 1.20158 0.94883 1.00309 1.07756 1.20398 0.93730 0.99353 1.01358 1.20952 0.99782 0.96749 0.98754 1.17079 0.87548 0.93517 0.92572 1.19430 1.01766 0.97802 1.28507 0.90192 1.25866 0.98599 0.95463 0.94521 1.69822 1.24050 1.13891 1.35386 0.86250 0.80157 0.81557 0.78667 1.18522 1.19889 1.20120 1.21937 0.86447 0.99233 0.98866 0.92589 0.92382 0.91789 0.89834 0.92189 0.92416 0.92133 0.94588 0.90537 0.91495 0.91162 0.90869 0.91690 0.88442 0.89468 0.89438 0.85600 0.91171 0.93787 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.99 37.15 0.33 -0.94 16 2 C 0.08 0.83 2.96 -67.72 -0.20 0.63 16 3 C -0.19 -1.91 8.50 37.16 0.32 -1.59 16 4 N -0.53 -6.85 4.64 -226.69 -1.05 -7.91 16 5 C 0.05 0.56 4.63 -3.83 -0.02 0.55 16 6 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 7 C -0.15 -2.30 5.26 -26.61 -0.14 -2.44 16 8 C 0.09 1.71 2.28 -26.65 -0.06 1.65 16 9 H 0.07 1.34 6.40 -51.93 -0.33 1.01 16 10 O -0.30 -7.02 9.13 -18.63 -0.17 -7.19 16 11 C 0.02 0.45 6.62 -38.34 -0.25 0.19 16 12 C -0.18 -4.12 8.22 -39.48 -0.32 -4.45 16 13 C -0.21 -4.85 10.04 -39.34 -0.39 -5.24 16 14 C -0.13 -3.12 9.97 -40.00 -0.40 -3.52 16 15 C -0.14 -3.79 8.62 -39.27 -0.34 -4.13 16 16 C 0.10 2.62 5.58 -106.68 -0.60 2.02 16 17 C -0.44 -12.22 8.72 -37.84 -0.33 -12.55 16 18 H 0.08 2.19 7.66 -52.48 -0.40 1.79 16 19 C 0.07 1.83 5.23 -17.33 -0.09 1.74 16 20 N -0.80 -21.25 10.81 55.55 0.60 -20.65 16 21 Si 0.91 19.35 29.58 -169.99 -5.03 14.32 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 25 C 0.06 0.98 4.68 -3.83 -0.02 0.96 16 26 H 0.06 0.47 6.30 -51.93 -0.33 0.15 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 32 H 0.06 0.69 6.65 -51.93 -0.35 0.34 16 33 H 0.04 0.42 6.62 -51.93 -0.34 0.08 16 34 H 0.08 0.77 6.03 -51.93 -0.31 0.46 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.99 5.36 -52.49 -0.28 1.71 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 42 H 0.13 3.43 6.13 -52.49 -0.32 3.10 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.04 0.70 6.73 -51.93 -0.35 0.35 16 45 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -28.24 342.46 -10.23 -38.47 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.06 Total: 6.48 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -2.68 Total: -28.69 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: -0.45 Total: -28.56 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.17 Total: -7.19 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.24 -10.23 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.344 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds