Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47309 * 2 1 4 4 N 1.46894 * 109.47174 * 119.99891 * 2 1 3 5 5 C 1.46849 * 111.00024 * 299.21018 * 4 2 1 6 6 C 1.53035 * 109.52267 * 174.16015 * 5 4 2 7 7 C 1.53119 * 109.27976 * 59.17924 * 6 5 4 8 8 C 1.53120 * 109.16271 * 302.34405 * 7 6 5 9 9 H 1.08994 * 109.53538 * 297.69303 * 8 7 6 10 10 O 1.42899 * 109.50156 * 177.59230 * 8 7 6 11 11 C 1.35642 * 116.99897 * 83.79819 * 10 8 7 12 12 C 1.38440 * 120.26461 * 354.69252 * 11 10 8 13 13 C 1.38308 * 120.05385 * 180.02562 * 12 11 10 14 14 C 1.38822 * 120.58769 * 359.97438 * 13 12 11 15 15 C 1.36491 * 120.54099 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.92578 * 0.02562 * 15 14 13 17 17 C 1.41151 * 120.28848 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00389 * 206.69130 * 17 16 15 19 19 C 1.39932 * 119.99996 * 26.68680 * 17 16 15 20 20 N 1.30862 * 120.00076 * 12.70921 * 19 17 16 21 21 Si 1.86801 * 120.00186 * 192.71127 * 19 17 16 22 22 H 1.48501 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47572 * 120.00344 * 21 19 17 24 24 H 1.48507 * 109.46985 * 240.00574 * 21 19 17 25 25 C 1.46853 * 111.00322 * 175.00098 * 4 2 1 26 26 H 1.09003 * 109.47571 * 300.00159 * 1 2 3 27 27 H 1.09004 * 109.47150 * 60.00334 * 1 2 3 28 28 H 1.09007 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47459 * 240.00361 * 2 1 3 30 30 H 1.09004 * 109.46741 * 299.99916 * 3 2 1 31 31 H 1.09003 * 109.46934 * 59.99451 * 3 2 1 32 32 H 1.08998 * 109.47197 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46502 * 294.17617 * 5 4 2 34 34 H 1.08994 * 109.45911 * 54.14722 * 5 4 2 35 35 H 1.09001 * 109.50634 * 179.12223 * 6 5 4 36 36 H 1.08997 * 109.50474 * 299.20071 * 6 5 4 37 37 H 1.08999 * 109.52256 * 182.43809 * 7 6 5 38 38 H 1.09003 * 109.52360 * 62.24942 * 7 6 5 39 39 H 1.08001 * 119.97546 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.71107 * 179.70326 * 13 12 11 41 41 H 1.08001 * 119.72955 * 180.02562 * 14 13 12 42 42 H 1.07995 * 120.03758 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00309 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.46290 * 65.82166 * 25 4 2 45 45 H 1.09005 * 109.46192 * 305.85850 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 1.5642 -0.0157 2.4205 6 6 1.9680 -0.8418 3.6439 7 6 3.4905 -1.0031 3.6649 8 6 3.9437 -1.6664 2.3613 9 1 3.5061 -2.6619 2.2876 10 8 5.3689 -1.7696 2.3489 11 6 5.9146 -2.8364 2.9846 12 6 5.1117 -3.7073 3.7011 13 6 5.6728 -4.7934 4.3480 14 6 7.0405 -5.0228 4.2868 15 6 7.8546 -4.1797 3.5873 16 6 7.3074 -3.0671 2.9215 17 6 8.1421 -2.1905 2.1954 18 1 7.8514 -1.1597 2.0559 19 6 9.3462 -2.6570 1.6565 20 7 9.5854 -3.9425 1.6047 21 14 10.6124 -1.4447 1.0109 22 1 10.1043 -0.0599 1.1827 23 1 11.8808 -1.6043 1.7663 24 1 10.8582 -1.7060 -0.4302 25 6 3.4827 -0.8164 1.1752 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.0227 0.9713 2.4813 34 1 0.4796 0.0888 2.3948 35 1 1.6436 -0.3315 4.5508 36 1 1.4982 -1.8238 3.5911 37 1 3.7791 -1.6272 4.5106 38 1 3.9594 -0.0234 3.7572 39 1 4.0463 -3.5385 3.7551 40 1 5.0419 -5.4665 4.9095 41 1 7.4639 -5.8754 4.7968 42 1 8.9175 -4.3661 3.5447 43 1 10.4200 -4.2659 1.2307 44 1 3.9322 0.1744 1.2417 45 1 3.7914 -1.2933 0.2449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = -37.257033 kcal Electronic energy + Delta-G solvation = -23640.281342 eV Core-core repulsion = 20428.654368 eV Total energy + Delta-G solvation = -3211.626974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17327 -39.83528 -37.91200 -35.47561 -35.39930 -31.98813 -31.67822 -30.72606 -30.07350 -28.09234 -27.05560 -25.38055 -24.36395 -22.82618 -22.46305 -21.27131 -20.24697 -19.30338 -18.34849 -17.44272 -16.88010 -16.33136 -16.02317 -15.93511 -15.74483 -15.46443 -15.26681 -14.88236 -14.58246 -14.31454 -14.00846 -13.94554 -13.55772 -13.44108 -13.17279 -12.91613 -12.88524 -12.78371 -12.69212 -12.33372 -12.27683 -12.19163 -12.05388 -11.71951 -11.66540 -11.62706 -11.37785 -11.14426 -11.06493 -11.04629 -9.35423 -9.28793 -8.84279 -8.52278 -6.22800 0.93756 1.11357 1.36805 1.48857 1.51816 2.23269 2.38000 2.77586 3.21042 3.67255 3.75185 3.80991 3.95942 4.00846 4.12767 4.21697 4.30065 4.37116 4.39768 4.50094 4.52034 4.57022 4.67185 4.71782 4.74634 4.75961 4.88216 4.91905 5.02691 5.03850 5.07898 5.10191 5.16851 5.23403 5.28573 5.34885 5.42153 5.46386 5.50207 5.89092 5.90495 6.05825 6.17124 6.17623 6.32680 6.55190 6.82721 6.94483 7.25934 8.40540 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.004674 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.734717 B = 5988.691291 C = 7224.287071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 C -0.184 4.184 4 N -0.532 5.532 5 C 0.048 3.952 6 C -0.106 4.106 7 C -0.140 4.140 8 C 0.088 3.912 9 H 0.063 0.937 10 O -0.327 6.327 11 C 0.010 3.990 12 C -0.180 4.180 13 C -0.203 4.203 14 C -0.138 4.138 15 C -0.163 4.163 16 C 0.056 3.944 17 C -0.482 4.482 18 H 0.065 0.935 19 C 0.031 3.969 20 N -0.835 5.835 21 Si 0.981 3.019 22 H -0.264 1.264 23 H -0.261 1.261 24 H -0.266 1.266 25 C 0.073 3.927 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.286 0.714 44 H 0.037 0.963 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.281 8.040 -0.939 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 C -0.243 4.243 4 N -0.258 5.258 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.178 4.178 8 C 0.031 3.969 9 H 0.081 0.919 10 O -0.242 6.242 11 C -0.034 4.034 12 C -0.199 4.199 13 C -0.222 4.222 14 C -0.156 4.156 15 C -0.183 4.183 16 C 0.054 3.946 17 C -0.512 4.512 18 H 0.083 0.917 19 C -0.181 4.181 20 N -0.463 5.463 21 Si 0.802 3.198 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.191 1.191 25 C -0.055 4.055 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.209 7.553 -1.125 17.019 hybrid contribution 1.278 0.820 -0.266 1.541 sum -13.932 8.373 -1.391 16.313 Atomic orbital electron populations 1.21830 0.92304 1.02570 1.02751 1.21801 0.97090 0.92471 0.92156 1.22450 1.00721 0.97852 1.03243 1.62070 1.08224 1.52128 1.03394 1.22293 1.01625 0.95271 0.88725 1.21538 0.92874 1.01545 0.98418 1.22101 0.97964 1.00726 0.96964 1.22257 0.79246 0.99339 0.96041 0.91937 1.85890 1.21757 1.43566 1.72947 1.19346 0.92487 0.90775 1.00831 1.20975 0.98635 0.97807 1.02486 1.20615 0.94816 1.00199 1.06604 1.20692 0.94300 0.99644 1.00999 1.20937 0.99531 0.97701 1.00123 1.17469 0.89057 0.94475 0.93641 1.19517 1.03684 0.97373 1.30624 0.91678 1.26658 0.99905 0.97280 0.94265 1.69869 1.24930 1.15386 1.36071 0.85185 0.77526 0.78689 0.78431 1.18809 1.18543 1.19083 1.21748 0.88593 0.98132 0.97048 0.91698 0.90722 0.92193 0.90600 0.90523 0.91835 0.94093 0.94495 0.87957 0.89011 0.90992 0.92151 0.92406 0.85847 0.85860 0.86893 0.87187 0.90377 0.94440 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.99 71.98 0.65 -1.38 16 2 C 0.07 1.45 2.96 44.92 0.13 1.58 16 3 C -0.18 -3.43 8.50 71.98 0.61 -2.81 16 4 N -0.53 -13.10 4.64 -871.12 -4.04 -17.14 16 5 C 0.05 1.00 4.63 86.32 0.40 1.40 16 6 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 7 C -0.14 -4.32 5.26 30.67 0.16 -4.16 16 8 C 0.09 3.23 2.28 30.65 0.07 3.30 16 9 H 0.06 2.37 6.40 -2.39 -0.02 2.35 16 10 O -0.33 -15.73 9.13 -89.56 -0.82 -16.55 16 11 C 0.01 0.53 6.62 23.08 0.15 0.68 16 12 C -0.18 -8.20 8.22 22.33 0.18 -8.02 16 13 C -0.20 -8.99 10.04 22.43 0.23 -8.76 16 14 C -0.14 -6.59 9.97 22.00 0.22 -6.37 16 15 C -0.16 -8.94 8.62 22.47 0.19 -8.75 16 16 C 0.06 3.20 5.58 -21.20 -0.12 3.08 16 17 C -0.48 -27.83 8.72 23.40 0.20 -27.63 16 18 H 0.06 3.79 7.66 -2.91 -0.02 3.77 16 19 C 0.03 1.67 5.23 85.25 0.45 2.12 16 20 N -0.83 -45.53 10.81 21.83 0.24 -45.30 16 21 Si 0.98 40.72 29.58 68.60 2.03 42.75 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 25 C 0.07 2.31 4.68 86.32 0.40 2.72 16 26 H 0.06 0.85 6.30 -2.39 -0.02 0.84 16 27 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.11 6.52 -2.39 -0.02 1.09 16 32 H 0.04 0.92 6.65 -2.39 -0.02 0.90 16 33 H 0.04 0.78 6.62 -2.39 -0.02 0.76 16 34 H 0.10 1.65 6.03 -2.39 -0.01 1.64 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 2.00 6.77 -2.39 -0.02 1.99 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 4.87 5.36 -2.91 -0.02 4.86 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.11 6.26 6.13 -2.91 -0.02 6.25 16 43 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 44 H 0.04 1.22 6.73 -2.39 -0.02 1.20 16 45 H 0.07 2.27 8.08 -2.38 -0.02 2.25 16 Total: -1.00 -63.52 342.46 2.49 -61.03 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.97 Total: 30.40 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 4.12 Total: -55.19 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -3.81 Total: -62.44 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.82 Total: -16.55 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -63.52 2.49 -61.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.774 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds