Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 N 1.46904 * 109.46942 * 119.99672 * 2 1 3 5 5 C 1.46852 * 110.99707 * 298.95442 * 4 2 1 6 6 C 1.53039 * 109.51823 * 185.83871 * 5 4 2 7 7 C 1.53110 * 109.28218 * 300.81888 * 6 5 4 8 8 C 1.53127 * 109.15897 * 57.65668 * 7 6 5 9 9 H 1.08997 * 109.50083 * 62.32625 * 8 7 6 10 10 O 1.42903 * 109.50360 * 182.40285 * 8 7 6 11 11 C 1.35638 * 117.00166 * 274.95173 * 10 8 7 12 12 C 1.38451 * 120.26444 * 4.64199 * 11 10 8 13 13 C 1.38308 * 120.04695 * 180.02562 * 12 11 10 14 14 C 1.38819 * 120.59337 * 359.97438 * 13 12 11 15 15 C 1.36497 * 120.53905 * 0.02562 * 14 13 12 16 16 C 1.40720 * 119.92899 * 359.97359 * 15 14 13 17 17 C 1.41147 * 120.29105 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00273 * 214.07220 * 17 16 15 19 19 C 1.39935 * 120.00256 * 34.06692 * 17 16 15 20 20 N 1.30871 * 119.99840 * 0.93955 * 19 17 16 21 21 Si 1.86800 * 120.00162 * 180.93887 * 19 17 16 22 22 H 1.48504 * 109.47193 * 94.99828 * 21 19 17 23 23 H 1.48507 * 109.46906 * 214.99404 * 21 19 17 24 24 H 1.48495 * 109.47342 * 334.99465 * 21 19 17 25 25 C 1.46846 * 110.99665 * 63.20377 * 4 2 1 26 26 H 1.08996 * 109.47607 * 300.00394 * 1 2 3 27 27 H 1.09008 * 109.46829 * 60.00385 * 1 2 3 28 28 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47136 * 239.99811 * 2 1 3 30 30 H 1.08994 * 109.47006 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46545 * 299.99471 * 3 2 1 32 32 H 1.08996 * 109.47243 * 59.99384 * 3 2 1 33 33 H 1.08997 * 109.46181 * 65.82811 * 5 4 2 34 34 H 1.09001 * 109.46061 * 305.85209 * 5 4 2 35 35 H 1.09002 * 109.50024 * 180.87801 * 6 5 4 36 36 H 1.09008 * 109.53598 * 60.78502 * 6 5 4 37 37 H 1.08998 * 109.52507 * 297.75760 * 7 6 5 38 38 H 1.08995 * 109.57772 * 177.59259 * 7 6 5 39 39 H 1.07995 * 119.97538 * 0.03987 * 12 11 10 40 40 H 1.07998 * 119.70011 * 180.28178 * 13 12 11 41 41 H 1.07997 * 119.73126 * 180.02562 * 14 13 12 42 42 H 1.07996 * 120.03505 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00397 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.49609 * 54.16267 * 25 4 2 45 45 H 1.08996 * 109.43391 * 294.19729 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.5692 -0.0121 2.4205 6 6 2.2147 -0.6720 3.6412 7 6 1.8209 -2.1510 3.6839 8 6 2.2582 -2.8252 2.3804 9 1 3.3433 -2.7737 2.2904 10 8 1.8446 -4.1931 2.3888 11 6 2.6680 -5.0817 2.9987 12 6 3.8012 -4.6418 3.6616 13 6 4.6379 -5.5520 4.2816 14 6 4.3535 -6.9103 4.2477 15 6 3.2429 -7.3704 3.6011 16 6 2.3761 -6.4640 2.9627 17 6 1.2259 -6.9315 2.2914 18 1 0.8790 -6.4291 1.4005 19 6 0.5349 -8.0459 2.7801 20 7 0.9446 -8.6436 3.8700 21 14 -0.9721 -8.6804 1.8770 22 1 -0.5730 -9.7751 0.9563 23 1 -1.9581 -9.1958 2.8607 24 1 -1.5833 -7.5750 1.0963 25 6 1.6123 -2.1033 1.1957 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.4846 -0.0864 2.4986 34 1 1.8593 1.0378 2.3793 35 1 1.8681 -0.1768 4.5483 36 1 3.2991 -0.5859 3.5713 37 1 0.7399 -2.2371 3.7935 38 1 2.3124 -2.6356 4.5274 39 1 4.0317 -3.5873 3.6947 40 1 5.5179 -5.2023 4.8009 41 1 5.0162 -7.6087 4.7368 42 1 3.0296 -8.4288 3.5794 43 1 0.4659 -9.4163 4.2086 44 1 1.9336 -2.5722 0.2657 45 1 0.5274 -2.1677 1.2788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = -21.513566 kcal Electronic energy + Delta-G solvation = -23655.025421 eV Core-core repulsion = 20444.081135 eV Total energy + Delta-G solvation = -3210.944286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.81668 -38.34819 -36.22314 -34.24615 -33.46901 -30.81173 -30.03973 -29.19030 -28.36502 -27.31274 -25.08981 -24.25987 -23.03557 -21.32185 -20.68917 -19.84051 -19.12846 -17.41630 -16.69243 -16.08214 -15.29387 -15.03281 -14.69315 -14.49948 -14.18744 -14.08411 -13.92393 -13.75282 -13.10752 -12.86466 -12.54010 -12.44626 -12.22322 -12.13485 -12.02731 -11.86951 -11.35689 -11.32906 -11.17642 -11.00136 -10.95327 -10.71999 -10.62633 -10.52782 -10.33399 -10.21447 -9.67913 -9.62346 -9.34713 -9.10779 -8.26608 -7.33958 -6.88747 -6.52652 -4.21679 2.81637 3.02982 3.14865 3.18448 3.26138 3.64107 4.05826 4.47859 4.77114 4.79149 4.87518 4.97135 5.06153 5.14632 5.21438 5.40226 5.42011 5.46528 5.56382 5.62820 5.67042 5.69867 5.78750 5.82529 5.90887 5.96439 6.03624 6.11380 6.13552 6.14282 6.18554 6.32192 6.43028 6.52046 6.60125 6.98490 7.09346 7.11936 7.20536 7.37007 7.47313 7.78112 7.88393 8.11097 8.28630 8.49032 8.80523 8.96678 9.14799 10.39645 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.004699 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.911175 B = 5957.281282 C = 7163.219025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.077 3.923 3 C -0.145 4.145 4 N -0.529 5.529 5 C 0.048 3.952 6 C -0.113 4.113 7 C -0.145 4.145 8 C 0.093 3.907 9 H 0.071 0.929 10 O -0.301 6.301 11 C 0.026 3.974 12 C -0.185 4.185 13 C -0.201 4.201 14 C -0.136 4.136 15 C -0.130 4.130 16 C 0.092 3.908 17 C -0.448 4.448 18 H 0.077 0.923 19 C 0.069 3.931 20 N -0.817 5.817 21 Si 0.912 3.088 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.062 3.938 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.276 0.724 44 H 0.080 0.920 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 14.916 -4.096 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.031 4.031 3 C -0.202 4.202 4 N -0.254 5.254 5 C -0.079 4.079 6 C -0.151 4.151 7 C -0.183 4.183 8 C 0.035 3.965 9 H 0.089 0.911 10 O -0.215 6.215 11 C -0.018 4.018 12 C -0.204 4.204 13 C -0.221 4.221 14 C -0.154 4.154 15 C -0.150 4.150 16 C 0.089 3.911 17 C -0.479 4.479 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.445 5.445 21 Si 0.738 3.262 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.065 4.065 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.146 0.854 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.099 14.680 -4.048 15.229 hybrid contribution -1.441 -0.249 -0.045 1.463 sum -1.342 14.432 -4.093 15.061 Atomic orbital electron populations 1.22504 0.97667 1.02503 1.02135 1.21681 0.92710 0.95257 0.93434 1.21887 1.01913 0.94908 1.01521 1.62036 1.59793 1.01715 1.01875 1.22211 0.97605 0.98296 0.89831 1.21538 1.01388 0.95371 0.96812 1.22140 1.02054 0.95105 0.98990 1.21979 0.99127 0.81756 0.93657 0.91077 1.85964 1.46209 1.14869 1.74502 1.19327 0.92503 0.89296 1.00674 1.20679 0.97227 0.97961 1.04571 1.20210 1.00950 0.93432 1.07502 1.20439 0.98429 0.94562 1.01990 1.21035 0.92828 1.00072 1.01069 1.17091 0.93405 0.86758 0.93825 1.19332 1.08253 1.09904 1.10427 0.90488 1.25818 0.98833 0.95470 0.94372 1.69777 1.38159 1.18001 1.18596 0.86231 0.80896 0.79421 0.79697 1.19678 1.20424 1.18767 1.21944 0.98522 0.87310 0.98759 0.92428 0.92191 0.92082 0.89854 0.91792 0.92367 0.92535 0.94583 0.90480 0.91470 0.91182 0.91606 0.90895 0.88367 0.89367 0.89332 0.85372 0.91318 0.90155 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.51 37.16 0.32 -1.59 16 2 C 0.08 0.82 2.98 -67.71 -0.20 0.62 16 3 C -0.14 -1.26 8.94 37.16 0.33 -0.93 16 4 N -0.53 -6.77 4.66 -226.68 -1.06 -7.83 16 5 C 0.05 0.56 4.66 -3.83 -0.02 0.54 16 6 C -0.11 -1.42 6.09 -26.65 -0.16 -1.58 16 7 C -0.15 -2.34 5.30 -26.61 -0.14 -2.48 16 8 C 0.09 1.67 2.27 -26.65 -0.06 1.61 16 9 H 0.07 1.32 6.28 -51.93 -0.33 0.99 16 10 O -0.30 -6.96 9.21 -18.61 -0.17 -7.13 16 11 C 0.03 0.66 6.64 -38.33 -0.25 0.41 16 12 C -0.19 -4.23 8.29 -39.48 -0.33 -4.56 16 13 C -0.20 -4.58 10.04 -39.34 -0.39 -4.97 16 14 C -0.14 -3.24 9.97 -40.00 -0.40 -3.64 16 15 C -0.13 -3.45 8.59 -39.27 -0.34 -3.79 16 16 C 0.09 2.51 5.54 -106.68 -0.59 1.92 16 17 C -0.45 -12.35 8.63 -37.84 -0.33 -12.68 16 18 H 0.08 2.11 7.77 -52.49 -0.41 1.70 16 19 C 0.07 1.80 5.37 -17.33 -0.09 1.70 16 20 N -0.82 -21.81 10.75 55.55 0.60 -21.21 16 21 Si 0.91 19.68 29.56 -169.99 -5.02 14.65 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 25 C 0.06 0.96 4.63 -3.84 -0.02 0.94 16 26 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.06 0.69 6.60 -51.93 -0.34 0.35 16 29 H 0.08 0.90 8.11 -51.93 -0.42 0.47 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 6.26 -51.93 -0.33 0.15 16 33 H 0.04 0.43 6.65 -51.93 -0.35 0.08 16 34 H 0.08 0.77 5.98 -51.93 -0.31 0.46 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.27 6.96 -51.93 -0.36 0.91 16 39 H 0.10 1.99 5.44 -52.49 -0.29 1.71 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.13 3.49 6.27 -52.49 -0.33 3.17 16 43 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 45 H 0.04 0.71 6.68 -51.93 -0.35 0.36 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -28.32 342.86 -10.24 -38.56 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.08 Total: 6.26 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.68 Total: -28.47 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: -0.46 Total: -29.04 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.17 Total: -7.13 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.32 -10.24 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.050 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds