Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 N 1.46904 * 109.46942 * 119.99672 * 2 1 3 5 5 C 1.46852 * 110.99707 * 298.95442 * 4 2 1 6 6 C 1.53039 * 109.51823 * 185.83871 * 5 4 2 7 7 C 1.53110 * 109.28218 * 300.81888 * 6 5 4 8 8 C 1.53127 * 109.15897 * 57.65668 * 7 6 5 9 9 H 1.08997 * 109.50083 * 62.32625 * 8 7 6 10 10 O 1.42903 * 109.50360 * 182.40285 * 8 7 6 11 11 C 1.35638 * 117.00166 * 274.95173 * 10 8 7 12 12 C 1.38451 * 120.26444 * 4.64199 * 11 10 8 13 13 C 1.38308 * 120.04695 * 180.02562 * 12 11 10 14 14 C 1.38819 * 120.59337 * 359.97438 * 13 12 11 15 15 C 1.36497 * 120.53905 * 0.02562 * 14 13 12 16 16 C 1.40720 * 119.92899 * 359.97359 * 15 14 13 17 17 C 1.41147 * 120.29105 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00273 * 214.07220 * 17 16 15 19 19 C 1.39935 * 120.00256 * 34.06692 * 17 16 15 20 20 N 1.30871 * 119.99840 * 0.93955 * 19 17 16 21 21 Si 1.86800 * 120.00162 * 180.93887 * 19 17 16 22 22 H 1.48504 * 109.47193 * 94.99828 * 21 19 17 23 23 H 1.48507 * 109.46906 * 214.99404 * 21 19 17 24 24 H 1.48495 * 109.47342 * 334.99465 * 21 19 17 25 25 C 1.46846 * 110.99665 * 63.20377 * 4 2 1 26 26 H 1.08996 * 109.47607 * 300.00394 * 1 2 3 27 27 H 1.09008 * 109.46829 * 60.00385 * 1 2 3 28 28 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47136 * 239.99811 * 2 1 3 30 30 H 1.08994 * 109.47006 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46545 * 299.99471 * 3 2 1 32 32 H 1.08996 * 109.47243 * 59.99384 * 3 2 1 33 33 H 1.08997 * 109.46181 * 65.82811 * 5 4 2 34 34 H 1.09001 * 109.46061 * 305.85209 * 5 4 2 35 35 H 1.09002 * 109.50024 * 180.87801 * 6 5 4 36 36 H 1.09008 * 109.53598 * 60.78502 * 6 5 4 37 37 H 1.08998 * 109.52507 * 297.75760 * 7 6 5 38 38 H 1.08995 * 109.57772 * 177.59259 * 7 6 5 39 39 H 1.07995 * 119.97538 * 0.03987 * 12 11 10 40 40 H 1.07998 * 119.70011 * 180.28178 * 13 12 11 41 41 H 1.07997 * 119.73126 * 180.02562 * 14 13 12 42 42 H 1.07996 * 120.03505 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00397 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.49609 * 54.16267 * 25 4 2 45 45 H 1.08996 * 109.43391 * 294.19729 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.5692 -0.0121 2.4205 6 6 2.2147 -0.6720 3.6412 7 6 1.8209 -2.1510 3.6839 8 6 2.2582 -2.8252 2.3804 9 1 3.3433 -2.7737 2.2904 10 8 1.8446 -4.1931 2.3888 11 6 2.6680 -5.0817 2.9987 12 6 3.8012 -4.6418 3.6616 13 6 4.6379 -5.5520 4.2816 14 6 4.3535 -6.9103 4.2477 15 6 3.2429 -7.3704 3.6011 16 6 2.3761 -6.4640 2.9627 17 6 1.2259 -6.9315 2.2914 18 1 0.8790 -6.4291 1.4005 19 6 0.5349 -8.0459 2.7801 20 7 0.9446 -8.6436 3.8700 21 14 -0.9721 -8.6804 1.8770 22 1 -0.5730 -9.7751 0.9563 23 1 -1.9581 -9.1958 2.8607 24 1 -1.5833 -7.5750 1.0963 25 6 1.6123 -2.1033 1.1957 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.4846 -0.0864 2.4986 34 1 1.8593 1.0378 2.3793 35 1 1.8681 -0.1768 4.5483 36 1 3.2991 -0.5859 3.5713 37 1 0.7399 -2.2371 3.7935 38 1 2.3124 -2.6356 4.5274 39 1 4.0317 -3.5873 3.6947 40 1 5.5179 -5.2023 4.8009 41 1 5.0162 -7.6087 4.7368 42 1 3.0296 -8.4288 3.5794 43 1 0.4659 -9.4163 4.2086 44 1 1.9336 -2.5722 0.2657 45 1 0.5274 -2.1677 1.2788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -36.722672 kcal Electronic energy + Delta-G solvation = -23655.684937 eV Core-core repulsion = 20444.081135 eV Total energy + Delta-G solvation = -3211.603802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18038 -39.84502 -37.91525 -35.43693 -35.39000 -31.98602 -31.65726 -30.74442 -30.07878 -28.09173 -27.04087 -25.39266 -24.35387 -22.82150 -22.47838 -21.27293 -20.24557 -19.29544 -18.33675 -17.42525 -16.91144 -16.30823 -15.98168 -15.92764 -15.78143 -15.47644 -15.26349 -14.88882 -14.59468 -14.28978 -14.00612 -13.96423 -13.60937 -13.42539 -13.06839 -12.92104 -12.87918 -12.81643 -12.73791 -12.35965 -12.25262 -12.15660 -12.08311 -11.73022 -11.65638 -11.62348 -11.42099 -11.17002 -11.07231 -11.01339 -9.30462 -9.27592 -8.79924 -8.46141 -6.26115 0.94590 1.10076 1.36552 1.46710 1.52191 2.24820 2.37648 2.81669 3.20269 3.63963 3.74701 3.80228 3.95628 4.00551 4.12299 4.21047 4.29941 4.37028 4.39613 4.49383 4.51507 4.57280 4.66899 4.71314 4.74212 4.75604 4.87843 4.91305 5.02595 5.03999 5.07849 5.09389 5.17198 5.23630 5.28538 5.34795 5.41895 5.46481 5.50724 5.87613 5.93635 6.05890 6.15655 6.16917 6.33070 6.54345 6.84903 6.96948 7.25078 8.47040 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.004699 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.911175 B = 5957.281282 C = 7163.219025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 C -0.138 4.138 4 N -0.531 5.531 5 C 0.048 3.952 6 C -0.105 4.105 7 C -0.140 4.140 8 C 0.087 3.913 9 H 0.067 0.933 10 O -0.325 6.325 11 C 0.020 3.980 12 C -0.186 4.186 13 C -0.191 4.191 14 C -0.144 4.144 15 C -0.150 4.150 16 C 0.051 3.949 17 C -0.484 4.484 18 H 0.063 0.937 19 C 0.028 3.972 20 N -0.847 5.847 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.266 1.266 25 C 0.072 3.928 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.283 0.717 44 H 0.070 0.930 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 17.251 -4.038 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.035 4.035 3 C -0.195 4.195 4 N -0.257 5.257 5 C -0.079 4.079 6 C -0.143 4.143 7 C -0.178 4.178 8 C 0.030 3.970 9 H 0.085 0.915 10 O -0.240 6.240 11 C -0.025 4.025 12 C -0.205 4.205 13 C -0.210 4.210 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.049 3.951 17 C -0.515 4.515 18 H 0.081 0.919 19 C -0.183 4.183 20 N -0.476 5.476 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.190 1.190 25 C -0.056 4.056 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.409 17.037 -3.989 17.503 hybrid contribution -1.427 -0.851 -0.043 1.662 sum -1.019 16.187 -4.032 16.712 Atomic orbital electron populations 1.22456 0.97222 1.01509 1.03162 1.21807 0.93098 0.96329 0.92220 1.21845 1.01705 0.93255 1.02742 1.62076 1.60016 1.00251 1.03353 1.22294 0.97517 0.99347 0.88768 1.21534 1.01721 0.92642 0.98423 1.22083 1.01118 0.97521 0.97066 1.22292 0.99133 0.79663 0.95925 0.91463 1.85922 1.46669 1.17037 1.74363 1.19475 0.93203 0.89168 1.00642 1.20990 0.96337 0.99531 1.03650 1.20675 1.01524 0.92790 1.06061 1.20728 0.97941 0.95923 1.01621 1.21001 0.94120 0.99317 1.02531 1.17464 0.94119 0.88367 0.95184 1.19432 1.09586 1.11566 1.10930 0.91890 1.26617 1.01533 0.95125 0.94991 1.69842 1.39533 1.18544 1.19691 0.85196 0.77117 0.78749 0.78614 1.18480 1.19238 1.19046 1.21763 0.97644 0.89068 0.97099 0.92058 0.90491 0.94073 0.90345 0.92046 0.90713 0.91774 0.94682 0.87853 0.89189 0.90800 0.92710 0.92427 0.85712 0.85632 0.86764 0.87138 0.90688 0.91112 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 8.51 71.98 0.61 -2.82 16 2 C 0.07 1.42 2.98 44.92 0.13 1.56 16 3 C -0.14 -1.98 8.94 71.98 0.64 -1.33 16 4 N -0.53 -12.81 4.66 -871.09 -4.06 -16.86 16 5 C 0.05 1.00 4.66 86.33 0.40 1.40 16 6 C -0.11 -2.40 6.09 30.64 0.19 -2.21 16 7 C -0.14 -4.43 5.30 30.67 0.16 -4.27 16 8 C 0.09 3.15 2.27 30.65 0.07 3.22 16 9 H 0.07 2.47 6.28 -2.39 -0.01 2.45 16 10 O -0.33 -15.59 9.21 -89.52 -0.82 -16.41 16 11 C 0.02 1.02 6.64 23.08 0.15 1.18 16 12 C -0.19 -8.38 8.29 22.34 0.19 -8.20 16 13 C -0.19 -8.35 10.04 22.43 0.23 -8.13 16 14 C -0.14 -6.81 9.97 22.00 0.22 -6.59 16 15 C -0.15 -8.20 8.59 22.47 0.19 -8.00 16 16 C 0.05 2.91 5.54 -21.20 -0.12 2.79 16 17 C -0.48 -28.07 8.63 23.40 0.20 -27.87 16 18 H 0.06 3.67 7.77 -2.91 -0.02 3.65 16 19 C 0.03 1.51 5.37 85.25 0.46 1.97 16 20 N -0.85 -46.76 10.75 21.83 0.23 -46.52 16 21 Si 0.98 41.44 29.56 68.60 2.03 43.47 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C 0.07 2.25 4.63 86.33 0.40 2.65 16 26 H 0.06 1.09 6.56 -2.39 -0.02 1.07 16 27 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.04 0.92 6.60 -2.39 -0.02 0.91 16 29 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.83 6.26 -2.39 -0.01 0.81 16 33 H 0.03 0.76 6.65 -2.39 -0.02 0.74 16 34 H 0.10 1.67 5.98 -2.39 -0.01 1.66 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.98 6.96 -2.39 -0.02 1.96 16 39 H 0.13 4.86 5.44 -2.91 -0.02 4.84 16 40 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.11 6.32 6.27 -2.91 -0.02 6.31 16 43 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 44 H 0.07 2.29 8.10 -2.38 -0.02 2.27 16 45 H 0.04 1.17 6.68 -2.39 -0.02 1.15 16 Total: -1.00 -63.72 342.86 2.48 -61.24 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.97 Total: 29.75 kcal Atomic # 6 Polarization: -58.79 SS G_CDS: 4.13 Total: -54.66 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -3.82 Total: -63.38 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.82 Total: -16.41 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -63.72 2.48 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.512 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds