Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 N 1.46892 * 109.47110 * 120.00300 * 2 1 3 5 5 C 1.46848 * 111.00023 * 179.97438 * 4 2 1 6 6 C 1.53037 * 109.52519 * 185.83494 * 5 4 2 7 7 C 1.53114 * 109.28157 * 300.82393 * 6 5 4 8 8 O 1.42900 * 109.52667 * 177.56066 * 7 6 5 9 9 C 1.35640 * 117.00236 * 155.66748 * 8 7 6 10 10 C 1.38444 * 120.26609 * 5.59464 * 9 8 7 11 11 C 1.38301 * 120.04952 * 180.25541 * 10 9 8 12 12 C 1.38827 * 120.59343 * 359.74013 * 11 10 9 13 13 C 1.36490 * 120.53539 * 359.97438 * 12 11 10 14 14 C 1.40716 * 119.93105 * 0.02562 * 13 12 11 15 15 C 1.41155 * 120.29221 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00234 * 204.64832 * 15 14 13 17 17 C 1.39932 * 119.99683 * 24.64914 * 15 14 13 18 18 N 1.30868 * 120.00114 * 26.01399 * 17 15 14 19 19 Si 1.86807 * 119.99694 * 206.01608 * 17 15 14 20 20 H 1.48502 * 109.46833 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47038 * 299.99930 * 19 17 15 22 22 H 1.48495 * 109.47338 * 60.00186 * 19 17 15 23 23 C 1.53116 * 109.16238 * 57.65083 * 7 6 5 24 24 C 1.46849 * 111.00006 * 304.20375 * 4 2 1 25 25 H 1.08999 * 109.47195 * 59.99891 * 1 2 3 26 26 H 1.09001 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46612 * 299.99598 * 1 2 3 28 28 H 1.09005 * 109.46661 * 239.99852 * 2 1 3 29 29 H 1.09002 * 109.46919 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47191 * 300.00111 * 3 2 1 31 31 H 1.08998 * 109.47166 * 59.99784 * 3 2 1 32 32 H 1.09006 * 109.45914 * 65.82239 * 5 4 2 33 33 H 1.08994 * 109.46134 * 305.85226 * 5 4 2 34 34 H 1.08998 * 109.50221 * 180.87996 * 6 5 4 35 35 H 1.09001 * 109.50277 * 60.76314 * 6 5 4 36 36 H 1.09004 * 109.52145 * 297.68303 * 7 6 5 37 37 H 1.08002 * 119.97804 * 359.97341 * 10 9 8 38 38 H 1.08008 * 119.70752 * 179.76100 * 11 10 9 39 39 H 1.07999 * 119.73109 * 180.02562 * 12 11 10 40 40 H 1.08000 * 120.03314 * 180.02562 * 13 12 11 41 41 H 0.97000 * 119.99922 * 5.77293 * 18 17 15 42 42 H 1.08996 * 109.50375 * 62.28863 * 23 7 6 43 43 H 1.09004 * 109.50450 * 182.40962 * 23 7 6 44 44 H 1.08989 * 109.46510 * 294.18088 * 24 4 2 45 45 H 1.08998 * 109.45722 * 54.14990 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.4877 -0.7126 1.2330 6 6 3.9606 -1.5637 2.4137 7 6 3.4097 -0.9739 3.7148 8 8 3.8010 -1.7968 4.8156 9 6 3.8577 -1.2071 6.0358 10 6 3.4348 0.1011 6.1989 11 6 3.4995 0.6997 7.4439 12 6 3.9816 -0.0015 8.5409 13 6 4.3994 -1.2942 8.4086 14 6 4.3433 -1.9251 7.1520 15 6 4.7739 -3.2614 7.0065 16 1 5.1090 -3.6191 6.0440 17 6 4.7666 -4.1229 8.1092 18 7 3.9367 -3.9119 9.0988 19 14 5.9415 -5.5740 8.1686 20 1 5.7356 -6.3262 9.4323 21 1 5.6816 -6.4689 7.0124 22 1 7.3409 -5.0807 8.1080 23 6 1.8816 -0.9193 3.6345 24 6 1.4685 -0.0872 2.4184 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.8623 0.3048 1.3456 33 1 3.8664 -1.1382 0.3038 34 1 5.0500 -1.5656 2.4475 35 1 3.5978 -2.5847 2.2947 36 1 3.8043 0.0326 3.8542 37 1 3.0584 0.6560 5.3523 38 1 3.1717 1.7218 7.5641 39 1 4.0256 0.4794 9.5068 40 1 4.7725 -1.8322 9.2675 41 1 3.2704 -3.2102 9.0318 42 1 1.4861 -1.9301 3.5348 43 1 1.4857 -0.4608 4.5407 44 1 1.8522 0.9273 2.5257 45 1 0.3811 -0.0587 2.3500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -43.325866 kcal Electronic energy + Delta-G solvation = -23586.793697 eV Core-core repulsion = 20374.903559 eV Total energy + Delta-G solvation = -3211.890138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23202 -39.96741 -38.16834 -35.71867 -35.20425 -32.12656 -31.50660 -30.88382 -30.17907 -28.12968 -26.93685 -25.36728 -24.21300 -23.01253 -22.52097 -21.44752 -20.32986 -19.85216 -18.49255 -17.34451 -16.61312 -16.53996 -16.25790 -15.88493 -15.70369 -15.32470 -15.28081 -15.05895 -14.61150 -14.47744 -14.19540 -13.95620 -13.60560 -13.45004 -13.19236 -13.01947 -12.80295 -12.65088 -12.58749 -12.41967 -12.30446 -12.11821 -11.98703 -11.94258 -11.66973 -11.64938 -11.52822 -11.21585 -11.06054 -10.82223 -9.60302 -9.29105 -9.24638 -8.86798 -6.32138 0.83200 0.95380 1.49930 1.63364 1.79976 2.34531 2.59137 2.67808 2.88009 3.50546 3.70671 3.74194 3.96599 3.98826 4.09285 4.20018 4.23410 4.29110 4.33812 4.37708 4.40797 4.50881 4.57286 4.67167 4.71289 4.73385 4.82813 4.84455 4.91153 4.96849 5.01360 5.11241 5.13266 5.17318 5.20029 5.30667 5.33266 5.38966 5.54207 5.76174 5.81944 5.98641 6.09641 6.15334 6.18803 6.34789 6.52584 6.91306 7.14851 8.06525 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.004084 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.890226 B = 6854.543910 C = 7651.053295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.185 4.185 4 N -0.544 5.544 5 C 0.068 3.932 6 C -0.107 4.107 7 C 0.082 3.918 8 O -0.325 6.325 9 C 0.004 3.996 10 C -0.170 4.170 11 C -0.217 4.217 12 C -0.116 4.116 13 C -0.221 4.221 14 C 0.049 3.951 15 C -0.542 4.542 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.820 5.820 19 Si 1.115 2.885 20 H -0.268 1.268 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.133 4.133 24 C 0.065 3.935 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.282 0.718 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.040 0.960 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 7.954 -16.511 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.244 4.244 4 N -0.269 5.269 5 C -0.060 4.060 6 C -0.145 4.145 7 C 0.026 3.974 8 O -0.240 6.240 9 C -0.041 4.041 10 C -0.189 4.189 11 C -0.236 4.236 12 C -0.134 4.134 13 C -0.240 4.240 14 C 0.046 3.954 15 C -0.571 4.571 16 H 0.082 0.918 17 C -0.212 4.212 18 N -0.444 5.444 19 Si 0.932 3.068 20 H -0.192 1.192 21 H -0.186 1.186 22 H -0.188 1.188 23 C -0.172 4.172 24 C -0.063 4.063 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.483 6.030 -15.599 17.083 hybrid contribution -0.395 2.268 -0.441 2.344 sum -3.878 8.298 -16.040 18.471 Atomic orbital electron populations 1.21911 0.93703 1.02307 1.02411 1.21792 0.96277 0.92660 0.92532 1.22462 1.01492 0.97652 1.02753 1.62178 1.07921 1.54363 1.02410 1.21999 0.87627 0.98363 0.97966 1.21600 1.00585 1.00629 0.91684 1.22484 0.94970 0.94040 0.85933 1.85978 1.84691 1.39185 1.14165 1.19281 1.05403 0.93597 0.85782 1.20988 1.05394 0.93909 0.98572 1.20563 1.10357 1.00294 0.92387 1.20610 1.00097 0.94218 0.98513 1.20682 1.10288 0.96202 0.96876 1.17503 0.92905 0.94347 0.90613 1.20475 1.41222 0.96368 0.99000 0.91761 1.28386 0.98144 1.04161 0.90492 1.70587 1.12034 1.28981 1.32751 0.83041 0.74187 0.71713 0.77833 1.19242 1.18637 1.18817 1.22055 0.95243 1.01419 0.98448 1.22018 1.00892 0.95128 0.88266 0.90552 0.92479 0.92688 0.89080 0.92557 0.90599 0.93054 0.93801 0.88371 0.90898 0.91487 0.92352 0.85763 0.85639 0.86562 0.88801 0.90621 0.92095 0.92163 0.94140 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.84 71.98 0.64 -1.51 16 2 C 0.08 1.23 3.02 44.92 0.14 1.36 16 3 C -0.18 -2.70 8.51 71.98 0.61 -2.09 16 4 N -0.54 -11.97 4.68 -871.14 -4.08 -16.05 16 5 C 0.07 1.50 4.89 86.33 0.42 1.92 16 6 C -0.11 -3.16 5.75 30.64 0.18 -2.99 16 7 C 0.08 2.93 2.18 30.67 0.07 2.99 16 8 O -0.32 -15.57 9.10 -89.54 -0.81 -16.38 16 9 C 0.00 0.20 6.63 23.08 0.15 0.35 16 10 C -0.17 -7.56 8.26 22.33 0.18 -7.37 16 11 C -0.22 -9.36 10.04 22.43 0.23 -9.14 16 12 C -0.12 -5.41 9.97 22.00 0.22 -5.19 16 13 C -0.22 -11.88 7.90 22.47 0.18 -11.70 16 14 C 0.05 2.78 5.32 -21.20 -0.11 2.67 16 15 C -0.54 -31.35 8.65 23.40 0.20 -31.15 16 16 H 0.06 3.77 7.71 -2.91 -0.02 3.75 16 17 C 0.00 0.18 4.93 85.25 0.42 0.60 16 18 N -0.82 -46.29 12.30 21.83 0.27 -46.02 16 19 Si 1.12 45.77 30.00 68.60 2.06 47.83 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 23 C -0.13 -4.27 5.37 30.64 0.16 -4.10 16 24 C 0.06 1.54 4.68 86.32 0.40 1.95 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.84 6.22 -2.38 -0.01 0.83 16 28 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.06 0.85 6.54 -2.39 -0.02 0.83 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.83 6.63 -2.39 -0.02 0.81 16 32 H 0.04 0.92 6.63 -2.38 -0.02 0.90 16 33 H 0.10 1.80 8.12 -2.39 -0.02 1.78 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.04 6.36 -2.38 -0.02 2.02 16 37 H 0.12 4.74 5.39 -2.91 -0.02 4.73 16 38 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.09 5.26 6.44 -2.91 -0.02 5.24 16 41 H 0.28 16.56 6.70 -92.71 -0.62 15.94 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.05 6.85 -2.38 -0.02 2.03 16 44 H 0.04 0.92 6.71 -2.39 -0.02 0.91 16 45 H 0.09 2.00 5.90 -2.39 -0.01 1.98 16 Total: -1.00 -64.21 341.64 2.64 -61.58 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 1.12 Total: 32.43 kcal Atomic # 6 Polarization: -67.47 SS G_CDS: 4.09 Total: -63.39 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -3.81 Total: -62.07 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.81 Total: -16.38 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.06 Total: 47.83 kcal Total: -64.21 2.64 -61.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.250 kcal (2) G-P(sol) polarization free energy of solvation -64.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds