Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00531 * 2 1 4 4 O 1.42900 * 109.47536 * 134.99842 * 3 2 1 5 5 C 1.35895 * 116.99975 * 180.02562 * 4 3 2 6 6 C 1.38750 * 120.05869 * 359.72405 * 5 4 3 7 7 C 1.38127 * 119.94373 * 179.70133 * 6 5 4 8 8 C 1.38291 * 120.05544 * 0.59509 * 7 6 5 9 9 C 1.38242 * 120.10856 * 359.68297 * 8 7 6 10 10 C 1.50702 * 119.97026 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.47209 * 269.97840 * 10 9 8 12 12 C 1.46895 * 111.00102 * 189.99918 * 11 10 9 13 13 C 1.50698 * 109.47013 * 170.09738 * 12 11 10 14 14 H 1.08000 * 120.00385 * 355.09207 * 13 12 11 15 15 C 1.37878 * 119.99935 * 175.08749 * 13 12 11 16 16 N 1.31521 * 119.99870 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00289 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47150 * 59.99857 * 17 15 13 19 19 H 1.48497 * 109.47562 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46882 * 300.00014 * 17 15 13 21 21 C 1.46904 * 110.99922 * 66.04266 * 11 10 9 22 22 C 1.53000 * 109.46747 * 63.39337 * 21 11 10 23 23 C 1.53002 * 109.46772 * 181.09548 * 22 21 11 24 24 C 1.38160 * 120.05867 * 0.02562 * 9 8 7 25 25 H 1.07992 * 120.00398 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99575 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.00043 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47397 * 255.00200 * 3 2 1 29 29 H 1.09006 * 109.46956 * 14.99668 * 3 2 1 30 30 H 1.08002 * 120.03086 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.97108 * 180.30197 * 7 6 5 32 32 H 1.07999 * 119.94513 * 179.70172 * 8 7 6 33 33 H 1.08999 * 109.47086 * 29.97640 * 10 9 8 34 34 H 1.08997 * 109.47271 * 149.97988 * 10 9 8 35 35 H 1.09002 * 109.47208 * 290.10019 * 12 11 10 36 36 H 1.09003 * 109.47014 * 50.09988 * 12 11 10 37 37 H 0.97004 * 119.99306 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.46752 * 183.38904 * 21 11 10 39 39 H 1.09000 * 109.47122 * 303.39046 * 21 11 10 40 40 H 1.08994 * 109.47144 * 301.09211 * 22 21 11 41 41 H 1.09001 * 109.47518 * 61.09955 * 22 21 11 42 42 H 1.09004 * 109.47145 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47353 * 299.99903 * 23 22 21 44 44 H 1.09004 * 109.46995 * 60.00414 * 23 22 21 45 45 H 1.08003 * 120.03028 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9092 2.3452 1.0789 6 6 3.6623 3.4650 0.2977 7 6 4.4552 4.5880 0.4323 8 6 5.5019 4.5925 1.3360 9 6 5.7535 3.4760 2.1114 10 6 6.8947 3.4846 3.0957 11 7 8.1138 2.9978 2.4362 12 6 9.1851 2.7669 3.4143 13 6 10.3275 2.0453 2.7471 14 1 10.2329 1.7141 1.7236 15 6 11.4937 1.8081 3.4434 16 7 11.6088 2.2112 4.6901 17 14 12.9101 0.9143 2.6163 18 1 13.3532 1.6836 1.4259 19 1 14.0401 0.7866 3.5712 20 1 12.4632 -0.4374 2.1939 21 6 8.5511 3.9271 1.3859 22 6 8.9220 5.2710 2.0162 23 6 9.3514 6.2475 0.9194 24 6 4.9596 2.3524 1.9848 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 2.4756 1.4867 -0.9927 29 1 1.3856 2.1161 0.2659 30 1 2.8482 3.4601 -0.4120 31 1 4.2604 5.4616 -0.1721 32 1 6.1237 5.4698 1.4364 33 1 7.0570 4.5008 3.4549 34 1 6.6532 2.8357 3.9375 35 1 9.5361 3.7236 3.8014 36 1 8.8027 2.1609 4.2357 37 1 12.4295 2.0446 5.1797 38 1 9.4200 3.5138 0.8738 39 1 7.7424 4.0726 0.6697 40 1 8.0587 5.6751 2.5448 41 1 9.7438 5.1287 2.7180 42 1 9.6153 7.2051 1.3684 43 1 10.2148 5.8435 0.3908 44 1 8.5296 6.3899 0.2176 45 1 5.1563 1.4805 2.5911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231623790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = 5.301099 kcal Electronic energy + Delta-G solvation = -22692.883200 eV Core-core repulsion = 19483.101685 eV Total energy + Delta-G solvation = -3209.781515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13239 -38.31162 -36.66271 -34.29374 -32.77943 -32.42957 -30.84387 -29.92417 -27.17102 -26.75104 -25.94920 -23.86718 -22.31999 -22.07106 -21.22484 -20.15140 -19.25445 -17.53015 -16.51290 -16.16094 -15.93942 -15.89907 -15.04116 -14.95402 -14.54699 -14.24364 -13.87744 -13.62845 -13.49248 -13.23062 -13.00482 -12.64834 -12.42736 -12.18116 -11.58481 -11.52635 -11.42399 -11.29817 -11.12962 -11.04893 -10.87913 -10.76049 -10.73445 -10.54811 -10.39158 -9.89741 -9.81392 -9.67257 -9.20099 -8.61674 -8.39073 -8.03114 -7.11030 -5.99493 -4.00129 1.51560 1.63219 1.76267 3.30244 3.35675 3.39524 3.42936 3.93294 4.46387 4.54172 4.72883 4.89809 4.98521 5.04166 5.11907 5.19138 5.32399 5.36437 5.45509 5.50832 5.55152 5.58254 5.64195 5.73501 5.88682 5.99181 6.12937 6.18958 6.19432 6.22409 6.29343 6.37563 6.45070 6.45827 6.52722 6.60121 6.78504 6.86095 6.97788 7.02165 7.35024 7.45785 7.51369 7.84387 8.12899 8.23686 8.58765 9.07728 9.63746 11.11089 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.003553 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.540492 B = 7879.328834 C = 8937.190492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 C 0.087 3.913 4 O -0.312 6.312 5 C 0.124 3.876 6 C -0.219 4.219 7 C -0.085 4.085 8 C -0.150 4.150 9 C -0.019 4.019 10 C 0.083 3.917 11 N -0.528 5.528 12 C 0.189 3.811 13 C -0.503 4.503 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.064 3.936 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.130 4.130 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.004 0.996 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 3.687 -9.016 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.170 4.170 3 C 0.012 3.988 4 O -0.226 6.226 5 C 0.079 3.921 6 C -0.238 4.238 7 C -0.103 4.103 8 C -0.169 4.169 9 C -0.020 4.020 10 C -0.045 4.045 11 N -0.251 5.251 12 C 0.064 3.936 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.065 4.065 22 C -0.203 4.203 23 C -0.200 4.200 24 C -0.149 4.149 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.569 3.025 -8.963 20.840 hybrid contribution 0.944 0.433 -0.185 1.055 sum -17.625 3.457 -9.148 20.156 Atomic orbital electron populations 1.23853 0.95417 1.02439 0.99643 1.22726 0.95660 0.98035 1.00569 1.21766 0.88049 0.96507 0.92442 1.86089 1.42073 1.36071 1.58417 1.18952 0.91641 0.85793 0.95719 1.21088 1.04069 0.94705 1.03894 1.20822 0.94671 0.97167 0.97673 1.21021 0.98781 0.98925 0.98140 1.19768 0.94406 0.92112 0.95727 1.21104 0.89572 0.99294 0.94501 1.62383 1.04642 1.43346 1.14727 1.19805 0.87749 0.95907 0.90140 1.21102 0.97789 1.36042 0.99263 0.91998 1.24964 0.98560 0.96103 0.94907 1.69952 1.27314 1.47225 1.09454 0.86595 0.81608 0.80371 0.79050 1.20332 1.21432 1.20188 1.22097 1.00035 0.89652 0.94684 1.22180 1.01550 0.97241 0.99297 1.21654 1.00888 0.98702 0.98791 1.20325 0.94676 0.99526 1.00362 0.87514 0.88340 0.86165 0.91156 0.91714 0.86193 0.86276 0.86113 0.94176 0.90488 0.97841 0.95711 0.92950 0.90269 0.92547 0.93093 0.90497 0.93649 0.92745 0.93560 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 14.31 29.02 0.42 -0.81 16 2 C -0.15 -1.33 9.89 -36.02 -0.36 -1.68 16 3 C 0.09 0.87 5.15 36.01 0.19 1.05 16 4 O -0.31 -4.31 10.12 -19.41 -0.20 -4.51 16 5 C 0.12 1.80 6.69 -39.22 -0.26 1.54 16 6 C -0.22 -2.76 9.04 -39.43 -0.36 -3.12 16 7 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 8 C -0.15 -2.15 7.91 -39.56 -0.31 -2.46 16 9 C -0.02 -0.31 4.89 -104.65 -0.51 -0.83 16 10 C 0.08 1.51 4.93 -4.97 -0.02 1.48 16 11 N -0.53 -11.31 4.69 -237.51 -1.11 -12.43 16 12 C 0.19 4.83 4.49 -4.98 -0.02 4.81 16 13 C -0.50 -14.05 8.40 -34.44 -0.29 -14.34 16 14 H 0.06 1.73 7.29 -52.49 -0.38 1.35 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.06 1.24 4.79 -3.82 -0.02 1.22 16 22 C -0.16 -2.91 5.18 -26.73 -0.14 -3.05 16 23 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 24 C -0.13 -2.09 9.64 -39.43 -0.38 -2.47 16 25 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 26 H 0.10 0.58 7.90 -52.48 -0.41 0.17 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.07 0.63 7.65 -51.93 -0.40 0.24 16 29 H 0.06 0.56 7.39 -51.93 -0.38 0.17 16 30 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.64 7.30 -52.49 -0.38 1.25 16 33 H 0.04 0.70 6.03 -51.93 -0.31 0.39 16 34 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 35 H 0.00 0.10 6.04 -51.93 -0.31 -0.21 16 36 H 0.02 0.68 7.93 -51.93 -0.41 0.27 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.70 6.94 -51.93 -0.36 1.34 16 39 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 40 H 0.05 0.85 5.71 -51.93 -0.30 0.55 16 41 H 0.08 1.62 6.35 -51.93 -0.33 1.29 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -30.13 361.29 -9.48 -39.61 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.13 Total: 1.39 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.20 Total: -20.39 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.38 Total: -38.28 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.13 -9.48 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231623790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.906 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds