Wall clock time and date at job start Tue Mar 31 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47193 * 2 1 4 4 O 1.42897 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.42893 * 114.00235 * 180.02562 * 4 3 2 6 6 H 1.08995 * 110.87499 * 333.84289 * 5 4 3 7 7 C 1.55138 * 110.99348 * 97.73300 * 5 4 3 8 8 C 1.54318 * 103.02219 * 153.74305 * 7 5 4 9 9 N 1.47437 * 107.23091 * 337.71934 * 8 7 5 10 10 C 1.46909 * 110.99919 * 236.73657 * 9 8 7 11 11 C 1.50698 * 109.46880 * 176.17004 * 10 9 8 12 12 C 1.37634 * 120.12625 * 255.11762 * 11 10 9 13 13 C 1.38618 * 120.24653 * 180.02562 * 12 11 10 14 14 C 1.38655 * 120.49968 * 359.97438 * 13 12 11 15 15 C 1.37594 * 120.25140 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.12636 * 74.85206 * 11 10 9 17 17 C 1.41390 * 120.24647 * 359.97438 * 16 11 10 18 18 H 1.08004 * 120.00198 * 330.75206 * 17 16 11 19 19 C 1.39943 * 120.00143 * 150.74600 * 17 16 11 20 20 N 1.30819 * 120.00200 * 347.65910 * 19 17 16 21 21 Si 1.86806 * 120.00220 * 167.65643 * 19 17 16 22 22 H 1.48501 * 109.47028 * 90.00107 * 21 19 17 23 23 H 1.48504 * 109.47218 * 210.00156 * 21 19 17 24 24 H 1.48500 * 109.47052 * 330.00017 * 21 19 17 25 25 C 1.47837 * 108.56995 * 359.00703 * 9 8 7 26 26 H 1.08997 * 109.46842 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47073 * 300.00011 * 1 2 3 28 28 H 1.09000 * 109.46892 * 60.00163 * 1 2 3 29 29 H 1.08999 * 109.46731 * 239.99654 * 2 1 3 30 30 H 1.09001 * 109.46631 * 120.00320 * 2 1 3 31 31 H 1.09003 * 109.46867 * 60.00015 * 3 2 1 32 32 H 1.08995 * 109.47074 * 300.00206 * 3 2 1 33 33 H 1.09005 * 110.70419 * 35.36076 * 7 5 4 34 34 H 1.09000 * 110.70839 * 272.13126 * 7 5 4 35 35 H 1.09002 * 109.89012 * 218.30800 * 8 7 5 36 36 H 1.09008 * 109.88414 * 97.12349 * 8 7 5 37 37 H 1.09002 * 109.46989 * 296.17140 * 10 9 8 38 38 H 1.08996 * 109.46498 * 56.17383 * 10 9 8 39 39 H 1.08004 * 119.87959 * 0.02562 * 12 11 10 40 40 H 1.08002 * 119.75092 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.86934 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.12862 * 179.97438 * 15 14 13 43 43 H 0.97005 * 120.00580 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.37450 * 142.92507 * 25 9 8 45 45 H 1.09001 * 110.37615 * 265.15321 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7479 0.0012 6 1 3.3734 3.4746 -0.4478 7 6 4.4538 3.1759 1.4368 8 6 5.5993 4.1803 1.1911 9 7 6.1534 3.8927 -0.1446 10 6 7.5936 3.6126 -0.0679 11 6 8.1046 3.2321 -1.4336 12 6 8.3932 1.9175 -1.7215 13 6 8.8640 1.5647 -2.9767 14 6 9.0490 2.5292 -3.9555 15 6 8.7670 3.8495 -3.6899 16 6 8.2833 4.2184 -2.4208 17 6 7.9843 5.5712 -2.1384 18 1 7.2202 5.8158 -1.4152 19 6 8.6783 6.5932 -2.7957 20 7 9.7564 6.3150 -3.4825 21 14 8.0654 8.3548 -2.6925 22 1 8.6844 9.0265 -1.5216 23 1 8.4364 9.0816 -3.9333 24 1 6.5882 8.3569 -2.5406 25 6 5.4206 2.7456 -0.7213 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 4.8090 2.3188 2.0090 34 1 3.6190 3.6598 1.9437 35 1 6.3727 4.0535 1.9487 36 1 5.2119 5.1989 1.2204 37 1 8.1185 4.5016 0.2818 38 1 7.7673 2.7911 0.6270 39 1 8.2524 1.1579 -0.9667 40 1 9.0883 0.5308 -3.1939 41 1 9.4159 2.2429 -4.9302 42 1 8.9123 4.5991 -4.4536 43 1 10.2378 7.0235 -3.9379 44 1 5.2841 2.8829 -1.7940 45 1 5.9543 1.8160 -0.5234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:37 Heat of formation + Delta-G solvation = -33.557845 kcal Electronic energy + Delta-G solvation = -23207.861891 eV Core-core repulsion = 19996.395326 eV Total energy + Delta-G solvation = -3211.466565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.24360 -37.75931 -36.61538 -33.76196 -33.50765 -31.77896 -29.43886 -28.81008 -28.34906 -26.02336 -25.36624 -24.02593 -21.73853 -20.96514 -20.74891 -20.57326 -19.29245 -17.07969 -16.86505 -15.95032 -15.68196 -15.25144 -14.86210 -14.42664 -13.96563 -13.84584 -13.70237 -13.46418 -12.99495 -12.91353 -12.56873 -12.44779 -12.20258 -11.95693 -11.67266 -11.54071 -11.40541 -11.24365 -11.05890 -10.97235 -10.94292 -10.85418 -10.71681 -10.45169 -10.35062 -10.26576 -9.43210 -9.39356 -9.18448 -9.10410 -7.66168 -7.29764 -7.19070 -6.61992 -4.23657 2.84926 3.02364 3.14008 3.19892 3.31388 3.59464 4.03644 4.63900 4.76419 4.80117 4.83135 4.89381 5.02116 5.17426 5.23859 5.31054 5.34571 5.48421 5.53673 5.75793 5.80321 5.82396 5.93159 5.95277 5.97157 6.01627 6.06473 6.15542 6.22223 6.30900 6.38916 6.50807 6.54531 6.63445 6.91803 7.21207 7.30751 7.35269 7.45800 7.59441 7.68364 7.76821 8.00806 8.15453 8.24954 8.41368 8.79033 9.04205 9.10415 10.33046 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.004275 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.305124 B = 6548.584044 C = 7377.198495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.062 3.938 4 O -0.378 6.378 5 C 0.077 3.923 6 H 0.074 0.926 7 C -0.161 4.161 8 C 0.041 3.959 9 N -0.510 5.510 10 C 0.124 3.876 11 C -0.197 4.197 12 C -0.086 4.086 13 C -0.243 4.243 14 C -0.108 4.108 15 C -0.160 4.160 16 C 0.131 3.869 17 C -0.447 4.447 18 H 0.094 0.906 19 C 0.071 3.929 20 N -0.804 5.804 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.261 1.261 25 C 0.060 3.940 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.083 0.917 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 -5.248 7.008 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.296 6.296 5 C 0.018 3.982 6 H 0.092 0.908 7 C -0.199 4.199 8 C -0.087 4.087 9 N -0.235 5.235 10 C -0.003 4.003 11 C -0.199 4.199 12 C -0.105 4.105 13 C -0.262 4.262 14 C -0.127 4.127 15 C -0.179 4.179 16 C 0.128 3.872 17 C -0.477 4.477 18 H 0.112 0.888 19 C -0.145 4.145 20 N -0.431 5.431 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.185 1.185 25 C -0.067 4.067 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.291 -4.847 6.569 14.756 hybrid contribution -0.093 0.336 0.490 0.601 sum -12.384 -4.511 7.059 14.952 Atomic orbital electron populations 1.21695 0.94965 1.02055 1.01953 1.21463 0.95491 0.95902 1.03316 1.22553 0.81567 0.97493 0.99895 1.87885 1.19071 1.27778 1.94883 1.23347 0.95649 0.84047 0.95155 0.90753 1.23213 0.99177 0.99804 0.97725 1.22760 0.95691 0.98892 0.91317 1.63730 1.04012 1.36917 1.18806 1.20826 0.86225 0.98520 0.94684 1.19495 1.12111 0.93434 0.94874 1.20380 0.99910 0.94620 0.95589 1.20297 1.13402 0.97052 0.95449 1.20684 1.00726 0.94172 0.97075 1.21361 1.04850 0.94035 0.97691 1.17378 0.87685 0.92509 0.89621 1.19793 1.17694 0.89959 1.20226 0.88812 1.25958 0.93716 1.01460 0.93351 1.69822 1.13024 1.34970 1.25275 0.86358 0.80521 0.81875 0.78180 1.19760 1.20503 1.18460 1.22852 0.90819 0.93389 0.99685 0.92158 0.92659 0.92512 0.91056 0.91309 0.93729 0.93377 0.90967 0.91385 0.92853 0.90794 0.90475 0.96594 0.90011 0.89847 0.89747 0.86609 0.91238 0.89824 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.37 16 3 C 0.06 0.70 5.77 37.16 0.21 0.91 16 4 O -0.38 -5.57 10.15 -35.23 -0.36 -5.93 16 5 C 0.08 1.14 3.54 -24.59 -0.09 1.06 16 6 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 7 C -0.16 -2.17 6.68 -24.91 -0.17 -2.33 16 8 C 0.04 0.63 6.90 -2.84 -0.02 0.61 16 9 N -0.51 -9.59 4.58 -232.69 -1.07 -10.66 16 10 C 0.12 2.55 3.93 -4.97 -0.02 2.53 16 11 C -0.20 -4.66 4.49 -103.92 -0.47 -5.13 16 12 C -0.09 -1.96 8.92 -39.66 -0.35 -2.31 16 13 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 14 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 15 C -0.16 -4.20 8.66 -38.87 -0.34 -4.54 16 16 C 0.13 3.42 5.54 -106.83 -0.59 2.83 16 17 C -0.45 -11.61 8.16 -37.75 -0.31 -11.92 16 18 H 0.09 2.39 6.73 -52.48 -0.35 2.04 16 19 C 0.07 1.79 5.22 -17.34 -0.09 1.70 16 20 N -0.80 -21.00 10.94 55.55 0.61 -20.39 16 21 Si 0.91 19.03 29.58 -169.99 -5.03 14.00 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 25 C 0.06 1.10 5.41 -2.30 -0.01 1.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.78 7.57 -51.93 -0.39 0.38 16 36 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.08 1.65 7.67 -51.93 -0.40 1.25 16 38 H 0.02 0.31 7.93 -51.93 -0.41 -0.10 16 39 H 0.08 1.69 8.00 -52.48 -0.42 1.27 16 40 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.08 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.12 3.15 6.30 -52.49 -0.33 2.82 16 43 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.05 1.03 7.16 -51.93 -0.37 0.66 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -27.44 359.23 -10.98 -38.41 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.71 Total: 5.73 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.83 Total: -26.58 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: -0.46 Total: -31.05 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.36 Total: -5.93 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.44 -10.98 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.856 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds